Quantifying how fine-grained environmental heterogeneity and genetic variation affect demography in an annual plant population

The ability of plant species to colonize new habitats and persist in changing environments depends on their ability to respond plastically to environmental variation and on the presence of genetic variation, thus allowing adaptation to new conditions. For invasive species in particular, the relationship between phenotypic trait expression, demography, and the quantitative genetic variation that is available to respond to selection are likely to be important determinants of the successful establishment and persistence of populations. However, the magnitude and sources of individual demographic variation in exotic plant populations remain poorly understood. How important is plasticity versus adaptability in populations of invasive species? Among environmental factors, is temperature, soil nutrients, or competition most influential, and at what scales and life stages do they affect the plants? To investigate these questions we planted seeds of the exotic annual plant Erodium brachycarpum into typical pasture habitat in a spatially nested design. Seeds were drawn from 30 inbred lines to enable quantification of genetic effects. Despite a positive population growth rate, a few plants (0.1?%) produced >50?% of the seeds, suggesting a low effective population size. Emergence and early growth varied by genotype, but as in previous studies on native plants, environmental effects greatly exceeded genetic effects, and survival was unrelated to genotype. Environmental influences shifted from microscale soil compaction and litter depth at emergence through to larger-scale soil nutrient gradients during growth and to competition during later survival and seed production. Temperature had no effect. Most demographic rates were positively correlated, but emergence was negatively correlated with other rates.     

The behaviour of Corophium volutator (Crustacea: Amphipoda)

The behaviour of Corophium volutator (Pallas) is outlined. Swimming, crawling, burrowing and feeding activities are described in detail. Animals usually swim on their backs. Every few seconds, swimming alternates with passive sinking. Animals can crawl over surfaces in and out of water. Out of water they do so by a looping motion using their second antennae and telson. When out of water animals crawl away from light and down slopes. In water they swim towards light. Burrowing is initiated by rapid beating of the pleopods; the animal then sinks below the surface by a concerted action of pereiopods, pleopods, telson, uropods and second antennae; within a few minutes, a shallow burrow is formed. The formation of permanent burrows is dependant on particle size, on adhesive properties of detritus and primary films on sand particles, and on a secretion produced by the animal itself. Individuals can turn about in permanent burrows. The species is essentially a detritus feeder. Animals normally feed only when in their burrows, by using their second antennae to scrape material from the substrate surface into the entrance of the burrow. This material is then transported to the mouth by the feeding appendages and respiratory current. The behaviour of small and large animals differs; small animals burrow rapidly and permanently, and do not emerge spontaneously; furthermore, they only swim occasionally. Large animals swim more frequently, spend more time on the substrate surface, and periodically move burrows. It is suggested that new habitats are colonized by large animals which have already bred once.     

An evolutionarily stable strategy for aggressiveness in feeding groups

Animals searching for food in groups display highly variabledegrees of aggressiveness. In this paper I present an individual-basedgame theoretical model of how gregarious animals should adjusttheir level of aggressiveness to their environmental conditions.In accordance with behavioral observations, the predicted levelof aggressiveness increases progressively with decreasing foodavailability and increasing animal density. The proposed modelalso predicts a positive influence of food energy value andhandling time on the level of aggressiveness within the group.In addition, the model provides information about the influenceof aggressive behavior on individual foraging success, interference,and population dynamics. Adaptive behavioral rules for aggressivenessin consumers are predicted to respond to both competitors and food density in a way that contributes to stabilization of thedynamics of population systems.     

Invasive aliens and sampling bias

Two hypotheses have been proposed to explain the observation of increased vigour of invasive alien plants in their nonindigenous ranges: phenotypic plasticity, and the post‐invasion evolution of increased competitive ability (EICA). Here I specify how a general pattern of increased vigour may result from sampling bias. Ignoring failed invasions can account for the illusion of increased vigour over a broad range of assumptions. Plasticity and EICA need not be viewed as explanations for a general pattern of increased vigour even if they are the mechanisms underlying every occurrence.     

Co-Gradient Variation in Growth Rate and Development Time of a Broadly Distributed Butterfly

Widespread species often show geographic variation in thermally-sensitive traits, providing insight into how species respond to shifts in temperature through time. Such patterns may arise from phenotypic plasticity, genetic adaptation, or their interaction. In some cases, the effects of genotype and temperature may act together to reduce, or to exacerbate, phenotypic variation in fitness-related traits across varying thermal environments. We find evidence for such interactions in life-history traits of Heteronympha merope, a butterfly distributed across a broad latitudinal gradient in south-eastern Australia. We show that body size in this butterfly is negatively related to developmental temperature in the laboratory, in accordance with the temperature-size rule, but not in the field, despite very strong temperature gradients. A common garden experiment on larval thermal responses, spanning the environmental extremes of H. merope''s distribution, revealed that butterflies from low latitude (warmer climate) populations have relatively fast intrinsic growth and development rates compared to those from cooler climates. These synergistic effects of genotype and temperature across the landscape (co-gradient variation) are likely to accentuate phenotypic variation in these traits, and this interaction must be accounted for when predicting how H. merope will respond to temperature change through time. These results highlight the importance of understanding how variation in life-history traits may arise in response to environmental change. Without this knowledge, we may fail to detect whether organisms are tracking environmental change, and if they are, whether it is by plasticity, adaptation or both.     

Modeling optimal responses and fitness consequences in a changing Arctic

Animals must balance a series of costs and benefits while trying to maximize their fitness. For example, an individual may need to choose how much energy to allocate to reproduction versus growth, or how much time to spend on vigilance versus foraging. Their decisions depend on complex interactions between environmental conditions, behavioral plasticity, reproductive biology, and energetic demands. As animals respond to novel environmental conditions caused by climate change, the optimal decisions may shift. Stochastic dynamic programming provides a flexible modeling framework with which to explore these trade‐offs, but this method has not yet been used to study possible changes in optimal trade‐offs caused by climate change. We created a stochastic dynamic programming model capturing trade‐off decisions required by an individual adult female polar bear (Ursus maritimus) as well as the fitness consequences of her decisions. We predicted optimal foraging decisions throughout her lifetime as well as the energetic thresholds below which it is optimal for her to abandon a reproductive attempt. To explore the effects of climate change, we shortened the spring feeding period by up to 3 weeks, which led to predictions of riskier foraging behavior and higher reproductive thresholds. The resulting changes in fitness may be interpreted as a best‐case scenario, where bears adapt instantaneously and optimally to new environmental conditions. If the spring feeding period was reduced by 1 week, her expected fitness declined by 15%, and if reduced by 3 weeks, expected fitness declined by 68%. This demonstrates an effective way to explore a species' optimal response to a changing landscape of costs and benefits and highlights the fact that small annual effects can result in large cumulative changes in expected lifetime fitness.     

Genetic Diversity and the Survival of Populations

Abstract: In this comprehensive review, a range of factors is considered that may influence the significance of genetic diversity for the survival of a population. Genetic variation is essential for the adaptability of a population in which quantitatively inherited, fitness-related traits are crucial. Therefore, the relationship between genetic diversity and fitness should be studied in order to make predictions on the importance of genetic diversity for a specific population. The level of genetic diversity found in a population highly depends on the mating system, the evolutionary history of a species and the population history (the latter is usually unknown), and on the level of environmental heterogeneity. An accurate estimation of fitness remains complex, despite the availability of a range of direct and indirect fitness parameters. There is no general relationship between genetic diversity and various fitness components. However, if a lower level of heterozygosity represents an increased level of inbreeding, a reduction in fitness can be expected. Molecular markers can be used to study adaptability or fitness, provided that they represent a quantitative trait locus (QTL) or are themselves functional genes involved in these processes. Next to a genetic response of a population to environmental change, phenotypic plasticity in a genotype can affect fitness. The relative importance of plasticity to genetic diversity depends on the species and population under study and on the environmental conditions. The possibilities for application of current knowledge on genetic diversity and population survival for the management of natural populations are discussed.     

季节、性别和群体大小对鹅喉羚警戒行为的影响

动物通过集群降低个体警戒时间,从而增加采食等行为时间,这种现象被称为" 群体效应" 。除群体大小
外,社会及环境因子如季节与性别也可能影响个体警戒水平。本文于2007 年至2009 年在新疆卡拉麦里山有蹄类
野生动物保护区采用焦点动物取样法,通过测定鹅喉羚警戒行为比例、平均每次警戒持续时间及10 min内警戒频
率,研究了季节、性别及群体大小对鹅喉羚个体警戒水平的影响,并验证群体效应。结果表明:由于季节更替
而产生的生物量的变化对鹅喉羚个体警戒水平无显著影响;在秋冬季除雄性外,鹅喉羚个体警戒水平均有随群
体增大而降低的趋势,但这种趋势并不十分明显。性别则显著影响其警戒水平,夏季由于雌性羚羊处于哺乳期,
因而其警戒水平显著高于雄性(P < 0.05);受繁殖行为影响,冬季雄性比雌性警觉性更高(P > 0. 05);春秋季
两性间警戒水平没有差异(P >0.05)。不同生理周期是导致鹅喉羚育幼期雌性及繁殖期雄性个体警戒水平发生
显著变化的重要因子。     

Model systems for environmental signaling

Studies of environmental signaling in animals have focused primarilyon organisms with relatively constrained responses, both temporallyand phenotypically. In this regard, existing model animals (e.g.,"worms and flies") are particularly extreme. Such animals haverelatively little capacity to alter their morphology in responseto environmental signals. Hence, they exhibit little phenotypicplasticity. On the other hand, basal metazoans exhibit relativelyunconstrained responses to environmental signals and may thusprovide more general insight, insofar as these constraints arelikely traits derived during animal evolution. Such enhancedphenotypic plasticity may result from greater sensitivity toenvironmental signals, or greater abundance of suitable targetcells, or both. Examination of what is known of the componentsof environmental signaling pathways in cnidarians reveals manysimilarities to well-studied model animals. In addition to theseelements, however, macroscopic basal metazoans (e.g., spongesand cnidarians) typically exhibit a system-level capabilityfor integrating environmental information. In cnidarians, thegastrovascular system acts in this fashion, generating localpatterns of signaling (e.g., pressure, shear, and reactive oxygenspecies) via its organism-wide functioning. Contractile regionsof tissue containing concentrations of mitochondrion-rich, epitheliomuscularcells may be particularly important in this regard, servingin both a functional and a signaling context. While the evolutionof animal circulatory systems is usually considered in termsof alleviating surface-to-volume constraints, such systems alsohave the advantage of enhancing the capacity of larger organismsto respond quickly and efficiently to environmental signals.More general features of animals that correlate with relativelyunconstrained responses to environmental signals (e.g., activestem cells at all stages of the life cycle) are also enumeratedand discussed.     

Behavioral flexibility of vervet monkeys in response to climatic and social variability

Responses to environmental variability sheds light on how individuals are able to survive in a particular habitat and provides an indication of the scope and limits of its niche. To understand whether climate has a direct impact on activity, and determine whether vervet monkeys have the behavioral flexibility to respond to environmental change, we examined whether the amount of time spent resting and feeding in the nonmating and mating seasons were predicted by the thermal and energetic constraints of ambient temperature. Our results show that high temperatures during the nonmating season were associated with an increase in time spent resting, at the expense of feeding. Cold temperatures during the nonmating season were associated with an increase in time spent feeding, at the expense of resting. In contrast, both feeding and resting time during the mating season were independent of temperature, suggesting that animals were not adjusting their activity in relation to temperature during this period. Our data indicate that climate has a direct effect on animal activity, and that animals may be thermally and energetically compromised in the mating season. Our study animals appear to have the behavioral flexibility to tolerate current environmental variability. However, future climate change scenarios predict that the time an animal has available for behaviors critical for survival will be constrained by temperature. Further investigations, aimed at determining the degree of behavioral and physiological flexibility displayed by primates, are needed if we are to fully understand the consequences of environmental change on their distribution and survival. Am J Phys Anthropol 154:357–364, 2014. © 2014 Wiley Periodicals, Inc.     

单细胞技术进展及其在植物研究中的应用

多细胞生物体的生存依赖于不同类型细胞特异性的功能分工,不同类型的细胞尽管基因组相同,但有其独特的发育过程和应对环境变化的能力。生物学的一大挑战就是揭示基因如何在正确的位置、正确的时间表达到正确的水平,最近出现了很多通过细胞类型特异性方法研究单细胞组学的工具,这些新技术使我们能通过空前分辨率,理解多细胞生物体内不同类型的单个细胞基因表达特点及其适应环境变化的机制。单细胞样品的获取一直是单细胞研究的一大技术瓶颈,因此本文将以如何获得起始材料为重点,探讨单细胞研究的样品标记、单细胞分离及获取、组学数据分析和结果验证等技术方法及其在植物研究中的应用。     

Ecological genetics of an island population of the House mouse (Mus musculus)

The House mouse ( Mus musculus L.) population on the small Welsh island of Skokholm was founded in the 1890s when a few animals were inadvertently introduced. It has thrived ever since. The animals breed from late March to early October, during which time the population increases 8–10 fold. Winter survival is related to temperature: the spring population can be as low as 100 individuals after a cold winter; if the winter is warm, so many animals survive that high numbers may occur in the following autumn. There are no resident predators of the mice, and no other small mammals on the island.
The population was sampled on 20 occasions between 1957 and 1972, and genetical changes measured by the incidences of non-metrical skeletal variants (which describe a substantial proportion of the genome) and (from 1968–72) by allele and genotype frequencies of electrophoretically detected genes. Two sorts of changes occurred: an irregular but increasing deviation from the genetical composition of the population at the beginning of the study period, and an annual cycle with frequencies changing in one direction during the breeding season and the opposite direction in the winter. Samples collected in the autumn were more similar to each other than spring caught samples, which conforms with independent evidence about the differing environmental contributors to death in different winters, as compared with general homogeneity of mortality factors during the summers. It is concluded that the genetical composition of the population is largely dependent on natural selection, although the agents and intensity of selection change with both seasons and years.     

The prenatal genotype-dependent modification by glucocorticoids of the morphometric characteristics of the genital system in mice and rats

Morphometric parameters of the reproductive system have been studied in adult males of four inbred mouse strains and two outbred rat strains after injection of corticosteroids into their mothers at 16 and 18 day of pregnancy. Significant interstrain difference in weight of sex glands was observed. Prenatal injection of corticosteroids decreased high values of features and increased low ones. Hence, the level of corticosteroids during prenatal development plays an important part in regulation of morphometric parameters of the reproductive system of adult rodents. The pattern of action depends on the genotype of an animal and may change under the influence of selection.     

Play behaviour in nonhuman animals and the animal welfare issue

The mission of defining animal welfare indicators is methodologically difficult, limited, and possibly impossible. A promising alternative, however, to evaluate suitable environmental conditions is the assessment of play behaviour. In the present review, we summarise the general aspects of play behaviour in nonhuman animals and propose its use as a potential indicator of animal welfare. Play behaviour probably occurs in most vertebrates and some invertebrates, but predominately in mammals. It is also more frequent in young males and is associated with the environmental context in which animals find themselves. Animals play if they are healthy and well-fed, but not if they are under stressful conditions or if they are in a stressful state. We can therefore use the prevalence of play behaviour as an indicator of suitable environmental conditions, considering the specificity associated with the above-mentioned modifying factors.     

Applying Stereotactic Injection Technique to Study Genetic Effects on Animal Behaviors

Stereotactic injection is a useful technique to deliver high titer lentiviruses to targeted brain areas in mice. Lentiviruses can either overexpress or knockdown gene expression in a relatively focused region without significant damage to the brain tissue. After recovery, the injected mouse can be tested on various behavioral tasks such as the Open Field Test (OFT) and the Forced Swim Test (FST). The OFT is designed to assess locomotion and the anxious phenotype in mice by measuring the amount of time that a mouse spends in the center of a novel open field. A more anxious mouse will spend significantly less time in the center of the novel field compared to controls. The FST assesses the anti-depressive phenotype by quantifying the amount of time that mice spend immobile when placed into a bucket of water. A mouse with an anti-depressive phenotype will spend significantly less time immobile compared to control animals. The goal of this protocol is to use the stereotactic injection of a lentivirus in conjunction with behavioral tests to assess how genetic factors modulate animal behaviors.     

B-chromosomes in inbred lines of rye (Secale cereale L.)

B-chromosomes from an experimental population of the Japanese JNK strain of rye, isogenic for its Bs, have been backcrossed into twelve different inbred lines. The experiment provides a way to study the effects of the Bs against a range of homozygous A-chromosome backgrounds. This publication deals with vigour and fertility: it shows that the rye Bs fit a parasitic model, and that they interact in their effects with the A-chromosome background genotype.     

Gene expression dynamics in randomly varying environments

A simple model of gene regulation in response to stochastically changing environmental conditions is developed and analyzed. The model consists of a differential equation driven by a continuous time 2-state Markov process. The density function of the resulting process converges to a beta distribution. We show that the moments converge to their stationary values exponentially in time. Simulations of a two-stage process where protein production depends on mRNA concentrations are also presented demonstrating that protein concentration tracks the environment whenever the rate of protein turnover is larger than the rate of environmental change. Single-celled organisms are therefore expected to have relatively high mRNA and protein turnover rates for genes that respond to environmental fluctuations.     

Helpers benefit offspring in both the short and long-term in the cooperatively breeding banded mongoose

Helpers in cooperative and communal breeding species are thought to accrue fitness benefits through improving the condition and survival of the offspring that they care for, yet few studies have shown conclusively that helpers benefit the offspring they rear. Using a novel approach to control for potentially confounding group-specific variables, I compare banded mongoose (Mungos mungo) offspring within the same litter that differ in the amount of time they spend with a helper, and hence the amount of care they receive. I show that pups that spend more time in close proximity to a helper are fed more, grow faster and have a higher probability of survival to independence than their littermates. Moreover, high growth rates during development reduce the age at which females breed for the first time, suggesting that helpers can improve the future fecundity of the offspring for which they care. These results provide strong evidence that it is the amount of investment per se that benefits offspring, rather than some correlate such as territory quality, and validate the assumption that helpers improve the reproductive success of breeders, and hence may gain fitness benefits from their actions. Furthermore, the finding that helpers may benefit offspring in the long-term suggests that current studies underestimate the fitness benefits that helpers gain from rearing the offspring of others.     

Adapting with Microbial Help: Microbiome Flexibility Facilitates Rapid Responses to Environmental Change

Animals and plants are metaorganisms and associate with microbes that affect their physiology, stress tolerance, and fitness. Here the hypothesis that alteration of the microbiome may constitute a fast-response mechanism to environmental change is examined. This is supported by recent reciprocal transplant experiments with reef corals, which have shown that their microbiome adapts to thermally variable habitats and changes over time when transplanted into different environments. Further, inoculation of corals with beneficial bacteria increases their stress tolerance. But corals differ in their ability to flexibly associate with different bacteria. How scales of microbiome flexibility may reflect different metaorganism adaptation mechanisms is discussed and future directions for research are pinpointed. It is posited that microbiome flexibility is a broad phenomenon that contributes to the ability of organisms to respond to environmental change. Importantly, adapting with microbial help may provide an alternate route to organismal adaptation that facilitates rapid responses.