A probabilistic model characterizing fish assemblages of French rivers: a framework for environmental assessment

1. Management of running waters and assessment of water quality trends require the use of biological methods. Among potential indicators, fish assemblages are of particular interest because of their ability to integrate environmental variability at different spatial scales. 2. The French Water Agencies and the Ministry of the Environment initiated a research programme to develop a fish-based index that would be applicable nation-wide. Such an index should encompass the relative importance of geographic, ecoregional and local factors influencing the distribution of riverine fishes. 3. An effective way of using the information available from fish assemblages to establish such an index is through the use of the 'reference condition approach' which involves testing a fish assemblage exposed to a potential stress against a reference condition that is unexposed to such a stress. 4. Logistic regression procedures were applied, using a fish data set of 650 reference sites fairly evenly distributed across French rivers and defined by some easily measured regional and local characteristics, to elaborate the simplest possible response model that adequately explains the observed patterns of occurrence for each species of a fish assemblage at a given site of any given river. This allows us to predict a 'theoretical' assemblage at a site. 5. The models were validated using a second independent data set of 88 reference sites. Using a third data set of 88 disturbed sites, the observed assemblages were then compared against the reference condition as defined by the 'theoretical' assemblages. The amount of deviation between the expected and observed assemblages within these sites is used as a measure of degradation. 6. This approach could be used as a framework for adapting and calibrating a multimetric index, thereby serving as a practical technical reference for conducting cost-effective biological assessments of lotic systems.     

Population structure of an invasive parthenogenetic gastropod in coastal lakes and estuaries of northern KwaZulu-Natal, South Africa

Background

Estuaries and coastal lakes receive little attention despite being heavily invaded by non-indigenous invasive species (NIS). In these situations, studies of population dynamics in invaded habitats can provide valuable insights into how NIS interact with new environments. Tarebia granifera is a prosobranch gastropod from south-east Asia which has invaded other sub-tropical parts of the world. This study addresses whether a small number of key environmental factors influences gastropod communities, and specifically how the population density and size structure of T. granifera were influenced by environmental change in estuaries and coastal lakes in southern Africa.

Methodology/Principal Findings

T. granifera''s density, number of brooded juveniles and size structure were measured at the St. Lucia Estuary, Mgobozeleni Estuary, Lake Sibaya and Lake Nhlange. Size structure was classified according to shell height (SH). All dissected individuals were found to be female and free from trematode infection. Salinity, water depth, temperature, and pH were the main factors correlated with population density of gastropod communities. T. granifera often reached densities well over 1000 ind. m⁻², displacing indigenous gastropods and becoming a dominant component of the benthic community. T. granifera successfully invaded estuaries despite frequent exposure to high salinity and desiccation, which could together eliminate >97% of the population. The persistence of T. granifera was ensured due to its high fecundity and the environmental tolerance of large adults (20–30 mm SH) which carried an average of 158±12.8 SD brooded juveniles. Repeat introductions were not essential for the success of this parthenogenetic NIS.

Conclusion/Significance

There is a need for a broader study on the reproductive biology of T. granifera (including the previously overlooked “brood pouch ecology”), which affects population dynamics and may be relevant to other parthenogenetic NIS, such as Melanoides tuberculata and Potamopyrgus antipodarum.     

Biomass and production estimates of a fish community in a small South African estuary

The fish community of the small (17·5 ha) intermittently open East Kleinemonde estuary was sampled between 1994 and 1997 to estimate population size, standing stock, growth and productivity. The estuarine-spawning species were numerically more abundant ( n c . 750 000) but due to their small size contributed only 11·7% to the total biomass. The total annual productivity of all fishes in the estuary ( n c . 890 000), with a standing stock of 28·44 g m ⁻², was calculated at 55·89 g m⁻² year⁻¹. The small sparid Rhabdosargus holubi with a production estimate of 41·35 g m⁻² year⁻¹ accounted for <74% of the total fish production in this estuary.     

Seasonal variation in the composition of fish assemblages in small Amazonian forest streams: evidence for predictable changes

1. The effects of seasonal inundation on the biology of fishes on floodplains of large Amazonian rivers are well studied. However, the small seasonal changes in headwater streams are generally considered to have little effect on fish assemblages. 2. In this study, we analysed seasonal changes in the species composition and abundance of fish in small Amazonian forest streams. We sampled fish with hand and seine nets in headwater streams in a 10 000 ha terra‐firme forest reserve near Manaus, Brazil. Each stream was surveyed at the end of the 2005 dry season, at the beginning of the 2006 rainy season and at the beginning of the 2006 dry season, by means of a standardized sampling effort. 3. The numbers of individuals and species caught were higher in the dry season, but rarefaction analyses indicated that greater species numbers could have been due simply to the larger number of individuals caught. 4. Between the dry and rainy season, the direction of changes in species composition in multivariate space varied among sites, especially for quantitative (abundance) data. However, the observed variation among sites was the less than expected if the directions of change were random. 5. Fish assemblages in the second dry season were more similar to those in the previous dry season than expected if changes in species composition among seasons were random. This indicates that a general seasonal pattern in fish assemblages can be detected, despite the existence of some erratic site‐specific changes. 6. Most of the species that showed large seasonal variations in density occupy temporary ponds during the rainy season, when much of the valley is inundated and pond networks form adjacent to streams. Short‐duration lateral migrations to these ponds may play an important role in the seasonal fish‐assemblage dynamics in Amazonian headwater streams. 7. Our results contrast with previous studies on small Amazonian streams, which have found little seasonal change in fish assemblages, and highlight the importance of the abundance of common species as an indicator of general fish assemblage structure in biological monitoring programmes.     

Relationships between fish feeding guild and trophic structure in English lowland shallow lakes subject to anthropogenic influence: implications for lake restoration

The shallow lakes of Eastern England have been subject to intense anthropogenic pressures including nutrient enrichment and fish stocking. We sought to determine the relationships between fish community structure and other ecosystem characteristics in 28 of these lakes through classification of fish species into piscivorous, zooplanktivorous and benthivorous feeding guilds according to the literature. Canonical correspondence analysis produced clear associations between fish and ecosystem characteristics that generally agreed with other theoretical (e.g. the alternative stable states hypothesis) and empirical studies, but with some important differences. There was a striking lack of relationships between nutrients and other variables, indicating the importance of top-down rather than bottom-up processes as a structuring force in the generally eutrophic study lakes. The presence of submerged (and shoreline) vegetation was associated with a diverse assemblage of apparently co-existing piscivorous (principally pike Esox lucius) and zooplanktivorous species. Perch Perca fluviatilis, a significant predator in other studies, was unimportant and argued to be limited by water quality in the extremely shallow lakes. In contrast, the benthivorous fish guild (principally carp Cyprinus carpio, bream Abramis brama and tench Tinca tinca) essentially represented the inverse of the potential pelagic associations between piscivores/zooplanktivores and vegetation. The introduction of large benthivores to many study lakes could have precipitated a loss of submerged vegetation through direct uprooting during foraging, with the effect of simplifying the fish community being most acute where littoral vegetation was limited by other anthropogenic factors. It is implied that attempts to promote or restore submerged vegetation in these lakes would best target benthivorous species.     

Resilience of fish assemblages in the Breede Estuary,South Africa,to environmental perturbations

Biogeographical transitional areas are often characterised by fluctuating environmental conditions and high variability in species composition and abundance. A 10-year summer sampling programme was undertaken in the permanently open Breede Estuary, situated between the winter and bimodal rainfall regions and in the cool/warm-temperate biogeographical transition zone. This allowed for the collection of data highlighting inter-annual changes in the fish community of a transition zone estuary and relating these changes to selected environmental variables (salinity, temperature and flow). Although the abundance of individual species varied on an inter-annual basis, the ranking of fish taxa in the Breede Estuary varied little over the 10-year period, indicating a fairly stable species composition. Multivariate analysis showed that the fish communities sampled in summer within each reach (upper, middle, lower) remained similar, regardless of year, and this was largely driven by salinity patterns which showed little inter-annual variation during the low-flow summer period. The Breede Estuary is, however, subject to regular winter and spring flooding, where up to 50% of the annual rainfall may occur over a few days. Although the magnitude of flooding prior to sampling had little effect on species abundance, changes in the frequency or return-time of events did; such that when two floods occurred in succession species abundance and richness declined.     

Analysis of the demersal community of fish and cephalopods on the Agulhas Bank, South Africa

The demersal fish and cephalopod communities of the continental shelf and upper slope from 17 to 395m deep were studied during five annual cruises between Cape Agulhas and Port Alfred, South Africa. The cruises showed a consistent pattern of an inshore community (<100m), a shelf community ( c . 90–190m) and a shelf-edge/upper slope fauna (>200m). These groups were identified by dendrograms and multidimensional scaling cluster analysis, which supported on-board observations of catch variation with depth. Although the boundaries are not clearly defined, examination of physical features at the clustered stations suggests that depth, temperature and, to a lesser extent, oxygen concentration are important in the grouping. Occasional, apparently anomalous associations of inshore stations suggested that water temperature and oxygen may over-ride the normal depth distributions of the species groups. This intimates that patterns offish and cephalopod distribution may be dynamic and in part related to the physical parameters of the water body.     

Species-specific impact of introduced largemouth bass Micropterus salmoides in the Groot Marico Freshwater Ecosystem Priority Area,South Africa

Largemouth bass Micropterus salmoides are among the world's 100 worst invaders and negatively affect aquatic biodiversity in many regions worldwide. In South Africa there is a paucity of empirical studies describing their impacts. The impact of M. salmoides on the fish community in the Groot Marico River catchment, an otherwise near-pristine river ecosystem and a freshwater ecosystem priority area, was assessed from surveys conducted in 2012. Fish presence and abundance were enumerated using multiple survey techniques, and their association with key habitat variables and the presence or absence of M. salmoides were assessed. A total of 14 native fish species were recorded, besides introduced M. salmoides, which occupied the majority of the mainstem and several tributaries downstream of barriers to upstream movement. Canonical correspondence analysis showed that only one native species, the Marico barb Barbus motebensis, had a negative spatial association with M. salmoides. Assessment of relative distributions showed this species to be excluded from M. salmoides-invaded river reaches, whereas the other native species were not visibly affected by the invader. This species-specificity of the impact of M. salmoides indicates that their impacts in South African streams may be dependent on predator-naiveté of prey.     

Zonation of intertidal macrobenthos in the estuaries of Schelde and Ems

Based on data, collected in 1980–1990, the intertidal benthic macrofauna of the Schelde and Ems estuaries was compared. The spatial occurrence of the benthic macrofauna along the salinity gradient, including the freshwater tidal area was emphasized. Both estuaries appeared to have a very similar species composition, especially at genus level. The higher number of species observed in the Schelde estuary was probably due to a greater habitat diversity. In both estuaries species diversity decreased with distance upstream. The total density did not vary along the estuarine gradient, whereas biomass is highest in the polyhaline zone.In both estuaries distinct intertidal benthic communities were observed along the salinity gradient: a marine community in the polyhaline zone, a brackish community in the mesohaline zone, and a third community in the oligohaline and freshwater tidal zones of the estuary. These three communities were very similar between both estuaries. Their main characteristics were discussed together with the occurrence and distribution of the dominant species.For the Schelde estuary and to a lesser extent also for the Ems estuary, there was evidence that anthropogenic stress had a negative effect on the intertidal macrobenthic communities of the oligohaline/freshwater tidal zone. Only Oligochaeta were dominating, whereas the very euryhaline and/or true limnetic species were missing. In the mesohaline zone, the Schelde estuary was dominated by large numbers of short-living, opportunistic species, whereas in the Ems estuary relatively more stable macrobenthic communities were observed. A comparison with some other European estuaries showed in general similar trends as those observed for the Schelde and Ems estuaries.     

生物完整性指数与水生态系统健康评价

生物完整性指数是目前水生态系统健康评价中应用最广泛的一个生态指标。本文扼要介绍了生物完整性指数的概念、水生态系统健康评价的原理以及大型底栖无脊椎动物完整性指数的构建方法,介绍了生物完整性指数在水生态系统健康评价中的应用及我国开展这方面工作的建议。     

A quarter century of change in the fish communities of three small streams modified by anthropogenic activities

Anthropogenic modification of small stream habitats insouthern Ontario has occurred with little concern forindigenous, non-game fish communities. The combinedeffects of urbanization, impoundment, and agricultureon the fish communities of three small streams, fromheadwaters to near-confluence locations, wereevaluated by comparing current fish communitystructure to historical records (species lists)collected over the last quarter century. Comparisonsusing cluster analysis showed that spatial andtemporal shifts in fish community composition did notoccur immediately after stream modifications but tookup to 10 years. Replacement of common species byformerly rare or absent species was evident in twostreams subjected to urbanization and impoundment;stream sections subjected to primarily agriculture land usedemonstrated minimal change during this study period. Urban zones and sections downstream of impoundmentswere dominated by species tolerant of controlledflows, siltation, channelization, homogenous spawningsubstrates, and elevated temperatures. Barrier-freeheadwater and agriculture zones with abundant riparianvegetation supported communities that were intolerantof controlled flows, dependent on lower summer watertemperatures, and require high dissolved oxygenlevels. Greater understanding of the causative forcesshaping fish communities can be used to facilitateintegration of greater biological realism into anyfuture conservation or restoration programs inanthropogenically-modified streams.     

The biomass and yield of the dominant fish species in Hartbeespoort Dam,South Africa

The standing stocks of the three dominant fish species in Hartbeespoort Dam, O. mossambicus, C. gariepinus and C. carpio, were determined by mark and recapture experiments and Leslie's method of fishing success. The biomass of O. mossambicus increased from 279 t in 1982 to 521 t in 1983, following good recruitment to the population after a year's mild winter mortality. Only one reliable estimate of each of the other two species could be made, C. gariepinus (293 t) and C. carpio (581 t). The fish community was heavily utilised by recreational anglers and the estimated mean annual yields were O. mossambicus (144 t), C. gariepinus (102 t) and C. carpio (449 t). These yields are probably higher than the longer term mean harvest as a result of low water levels during the study period, which increased catchability. The high standing stocks and yields are ascribed to high nutrient concentrations and primary production.     

Acoustic assessment of the number of pelagic fish in Lake Kinneret,Israel

The pelagic fish stock (mostly lavnun, Mirogrex terraesanctae) of Lake Kinneret was assessed using HADAS, a newly developed echo-counting analysis system. Total fish numbers (during Mar–Apr) were estimated to be 61 million in 1987, 218 million in 1988, 120 million in 1989, and 69 million in April 1990. The total fish number for March 1981 was recalculated from published data and estimated at 170 million. The decline in total numbers between 1988 and 1990 resulted primarily from a decrease in the relative abundance of the smallest size classes of fish. Since fish abundance apparently declined between 1981 and 1990, the decline in zooplankton standing stocks documented during these years cannot be attributed to higher fish predation caused by larger fish stocks. The HADAS estimates of lavnun population size are large enough to account for the known catch of lavnun.Contribution from Israel Oceanographic & Limnological Research, Ltd. This research was supported in part by the Israeli Water Commissioner, the Israeli Electric Company, and by a grant from the U.S. Agency for International Development.     

Temporal turnover and the maintenance of diversity in ecological assemblages

Temporal variation in species abundances occurs in all ecological communities. Here, we explore the role that this temporal turnover plays in maintaining assemblage diversity. We investigate a three-decade time series of estuarine fishes and show that the abundances of the individual species fluctuate asynchronously around their mean levels. We then use a time-series modelling approach to examine the consequences of different patterns of turnover, by asking how the correlation between the abundance of a species in a given year and its abundance in the previous year influences the structure of the overall assemblage. Classical diversity measures that ignore species identities reveal that the observed assemblage structure will persist under all but the most extreme conditions. However, metrics that track species identities indicate a narrower set of turnover scenarios under which the predicted assemblage resembles the natural one. Our study suggests that species diversity metrics are insensitive to change and that measures that track species ranks may provide better early warning that an assemblage is being perturbed. It also highlights the need to incorporate temporal turnover in investigations of assemblage structure and function.     

The relationship between local and regional diversity of indigenous forest fauna in KwaZulu-Natal Province, South Africa

The relationship between local and regional diversity was tested by regressing local community richness against regional species diversity for three taxa, birds, butterflies and mammals, in subtropical forest. The quadratic model best fits the relationship between local and regional diversity for birds. Local bird species richness is theoretically independent of the size of the regional pool of species and may represent saturated communities. A linear model best describes the relationship for mammals and butterflies. For mammals, the slope is shallow (0.264) and regional richness overestimates local species richness, suggesting communities are undersaturated. Extinction filtering may explain this pattern. Past climatic changes have filtered out many mammalian species, these changes have been too recent for autochthanous speciation, and the relatively low vagility of mammals has prevented extensive recolonisation. Differences in the nature of the diversity relationship between taxa are as much due to independent evolutionary histories as to differences in vagility and colonising potential. A pervasive role is suggested for regional biogeographic processes in the development of faunal assemblage structure. Large-scale processes are not considered in current conservation plans. We encourage the shift of conservation emphasis from local ecological processes and species interactions, to whole communities and consideration of regional processes.     

Past and present fish species recorded in the estuarine Lake Ichkeul,northern Tunisia

Lake Ichkeul in northern Tunisia is a Ramsar site, a MAB Biosphere Reserve and a UNESCO World Heritage Site. The system is one of the most important coastal wetlands in North Africa, especially as an over-wintering area for migratory birds, particularly Palaearctic waterfowl. The present study was aimed at diagnosing the status of fish species in Lake Ichkeul and documenting their annual and seasonal occurrence within the system. Fish samples were collected monthly at 22 sites from March 2011 to April 2012 using a variety of gears, including a dragnet, gillnet, trammelnet, frynet and beach-seine. Temperature and salinity measurements were taken at each site, while fishes were obtained from only 11 sites, representing mainly lacustrine stations. A total of 18 fish species belonging to 14 genera and 12 families were identified, with Mugilidae dominating with four species, followed by Syngnathidae with three species. This study represents a relative recovery in terms of fish species richness, since only 13 species were recorded here between 2003 and 2007. However, the numbers of fish caught, especially of the commercial taxa, seem to have declined in recent years, and the number of species currently present is much lower than that of several decades ago. Increasing human pressures, particularly reductions in catchment freshwater inputs, a breakdown in ecosystem connectivity, pollution and over-fishing appear to be the principal causes for the decline in fish abundance and diversity.     

Effects of habitat,wave exposure,and marine protected area status on coral reef fish assemblages in the Hawaiian archipelago

The relationships between fish assemblages, their associated habitat, and degree of protection from fishing were evaluated over a broad spatial scale throughout the main Hawaiian islands. Most fish assemblage characteristics showed positive responses to protection whether it was physical (e.g. habitat complexity), biological (e.g. coral cover growth forms), or human-induced (e.g. marine reserves). Fish biomass was lowest in areas of direct wave exposure and highest in areas partially sheltered from swells. Higher values for fish species richness, number of individuals, biomass, and diversity were observed in locations with higher substrate complexity. Areas completely protected from fishing had distinct fish assemblages with higher standing stock and diversity than areas where fishing was permitted or areas that were partially protected from fishing. Locations influenced by customary stewardship harbored fish biomass that was equal to or greater than that of no-take protected areas. Marine protected areas in the main Hawaiian islands with high habitat complexity, moderate wave disturbance, a high percentage of branching and/or lobate coral coupled with legal protection from fishing pressure had higher values for most fish assemblage characteristics.     

Development of a preliminary index of biotic integrity (IBI) based on fish assemblages to assess ecosystem condition in the lakes of central Mexico

The lakes of central Mexico have great cultural, economic, and biological value, but they are being degraded at an accelerating rate. We employed historical data on fish communities from 19 of these lakes and case studies of community responses to environmental degradation from four of the best-studied, Xochimilco, Cuitzeo, Chapala, and Pátzcuaro, to construct a preliminary index of biotic integrity (IBI). This IBI was designed to be an easily applied method for assessing lake ecosystem health and evaluating restoration efforts. The IBI had 10 metrics: number of total native species, number of common native species, number of native Goodeidae species, number of native Chirostoma species, number of native sensitive species, percent of biomass as tolerant species, percent of biomass as exotic species, percent of biomass as native carnivorous species, maximum standard length of native species, and percent of exotic invertebrate parasite species on or in native fishes. Initial applications of the index showed promise, accurately ranking the relative degradation of the four case-study lakes. Further tests of the index are warranted, and more data are needed to standardize sampling procedures, improve species classifications, and refine metric scoring criteria.     

Integrating spatial and temporal variability into the analysis of fish food web linkages in Tijuana Estuary

Our understanding of fish feeding interactions at Tijuana Estuary was improved by incorporating estimates of spatial and temporal variability into diet analyses. We examined the stomach contents of 7 dominant species (n=579 total fish) collected between 1994 and 1999. General feeding patterns pooled over time produced a basic food web consisting of 3 major trophic levels: (1) primary consumers (Atherinops affinis, Mugil cephalus) that ingested substantial amounts of plant material and detritus; (2) benthic carnivores (Clevelandia ios, Hypsopsetta guttulata, Gillichthys mirabilis, and Fundulus parvipinnis) that ingested high numbers of calanoid copepods and exotic amphipods (Grandidierella japonica); and (3) piscivores (Paralichthys californicus and Leptocottus armatus) that often preyed on smaller gobiids. Similarity-based groupings of individual species' diets were identified using nonmetric multidimensional scaling to characterize their variability within and between species, and in space and time. This allowed us identify major dietary shifts and recognize events (i.e., modified prey abundance during 1997–98 El Ni no floods) that likely caused these shifts.     

Health assessment of freshwater fish species from Albasini Dam,outside a DDT-sprayed area in Limpopo province,South Africa: a preliminary study

During 2006 to 2008, the water, sediment and fish in Albasini Dam, used as a reference site outside a DDT-sprayed area, had been found to be as affected as those in the nearby DDT-sprayed area were. Accordingly, the aim of the current study, conducted in 2014, was to determine the health status of fish from Albasini Dam by means of a histology-based fish health assessment protocol. High levels of nitrates, as well as the organochlorine pesticides aldrin, dieldrin, chlordane and methoxychlor, were found in the water. Fish muscle tissue contained pesticides, including methoxychlor. A semi-quantitative histological assessment on Clarias gariepinus, Coptodon rendalli and Oreochromis mossambicus showed diverse histopathology in selected target organs, with the gills being most affected. Notably, the testis tissue of one C. rendalli was filled with eosinophilic liquid, characteristic of necrosis. Microscopic intersex was found in two of the nine O. mossambicus sampled. This is the second time that intersex as microscopic testicular oocytes has been reported in O. mossambicus in South Africa. This finding perhaps indicates that reproduction may be compromised and this will be investigated further. The presence of intersex and other histopathology in organs could be early warning signs of the declining water quality in this dam.