Frond elongation rates of shallow waterMacrocystis pyrifera (L.) Ag. In northern Baja California,Mexico

Macrocystis pyrifera (L.) Ag.frond elongation rates were measured during autumn-winter, spring and summer in a shallow water (7.5 m depth) kelp bed in Bahía Papalote, northern Baja California. Frond elongation was maximum during spring and minimum during winter. Frond growth was significantly correlated with solar radiation, and was highest in the smallest size fronds (0–2 m). Average frond elongation rate varied between 0.3–11% d^–1 during the study period. The relationship between average frond length and elongation rate followed an exponential curve with a negative slope during autumn-winter and summer, but was best described by a straight line during spring. Standard growth rates were obtained by a graphic method. Standard growth rates had intermediate values between those reported for southern California and southern Baja California.M. pyrifera growth cycle shows a different trend from what has been previously reported.     

Phylogeography and species boundaries of the western North American Nightsnake (Hypsiglena torquata): revisiting the subspecies concept

The subspecies concept has received considerable debate throughout the past century. Subspecies were originally used to delineate potential incipient species, but were later employed to simply capture geographical variation. There is a recent trend to eliminate the trinomial in light of new evidence. Discrete, diagnosable lineages are elevated to specific status, while those that show clinal variation and/or appear to represent ecological pattern classes are placed in synonymy with the parent species and the subspecific epithets are disregarded. Here, I examine the species boundaries of nightsnakes (Hypsiglena torquata) using standard phylogeographic methods and mtDNA data from 178 individuals. Previously, seventeen subspecies of H. torquata were described. In this study, I recognize six species in what was previously considered H. torquata: one is novel, two were previously recognized subspecies, while the remaining three are wide-spread, polymorphic lineages, composed of multiple subspecies. I make the case to maintain the subspecific lineages in these wide-ranging species because they are geographically cohesive, morphologically discrete, and may represent incipient species within each complex, which have not yet achieved speciation. These subspecies are maintained, not only pending future investigations, but because they provide a useful identity for the taxonomy of this diverse lineage.     

Ecological effects of seaweed harvesting in the Gulf of California and Pacific Ocean off Baja California and California

The ecological effects of harvesting were investigated for two species, the giant kelp Macrocystis pyrifera and Eucheuma uncinatum, by using harvest records and aerial surveys that show yield changes and by using studies of recruitment, survivorship and community interactions. There were no ecological effects found for M. pyrifera harvested with contemporary methods, and there are no recommendations for changing current management practices for this species. It is recommended that E. uncinatum, which on occasion produces commercially significant standing crops, not be harvested unless special precautions are taken to leave some plants for regeneration of the harvested populations.     

Mass distribution in the fronds of macrocystis pyrifera from New Zealand and California

The mass distribution along the fronds of Macrocystis is examined for plants collected from California and New Zealand. Analysis of fronds classified according to length and condition yields polynomial curves for cumulative mass as a function of distance above the holdfast. Models for this functional relationship are discussed. Similarities and differences between the deep-water California plant and the shallow-water New Zealand plant are highlighted.     

Phylogeography of a stream-dwelling frog (Pseudacris cadaverina) in southern California

Recent phylogeographic studies of animal taxa in California have revealed common geographic patterns of evolutionary divergence and genetic diversity that are generally attributable to landscape influences. However, there remains a paucity of knowledge on the evolution of freshwater taxa in southern California. Here, we investigate phylogeographic patterns in a stream-dwelling frog (Pseudacris cadaverina). Two hundred and twenty-one individuals were collected from 46 populations across the species’ range in southern California. Using 1100 bp of sequence data from cytochrome b and tRNA-Glu, we conducted phylogenetic analyses, analysis of molecular variance, and nested clade phylogeographic analysis to gain insight into the factors contributing to the distribution of genetic diversity in P. cadaverina. We tested for evidence of two putative phylogeographic breaks and tested hypotheses that genetic diversity in this species is partitioned into (1) major watersheds, (2) mountain ranges, and (3) coastal and desert regions. Our results suggest that the eastern Transverse Ranges are the center of origin for extant P. cadaverina lineages and that the observed genetic structure in this species was established during the Pleistocene Epoch. There is strong support for three major haplotype groups and a Transverse Range break in P. cadaverina that is concordant with breaks found in numerous other taxa. The distribution of genetic diversity in P. cadaverina is due in large part to the separation of populations into different major watersheds and mountain ranges. Gene flow appears to be generally limited among disjunct populations throughout the region and some desert populations have been isolated by historical habitat fragmentation.     

Water relations of stem succulent trees in north-central Baja California

Summary Water relations of several stem succulent trees were measured in north-central Baja California in comparisons to other growth forms in the same habitat. Our research concentrated on three stem succulent species (Idria collumnaris, Pachycormus discolor and Bursera microphylla) each with a different succulent stem morphology. The stem succulent trees had 1 to 4 kg H₂O/m³ of trunk while the other trees and shrubs in the same habitat had 0.6 to 0.8 kg H₂O/m³. The diurnal and seasonal variation in leaf water potential was small for the stem succulent species in comparison to deciduous and evergreen species as a consequence of the stem-water, buffering capacity. In addition, the leaf conductance of the stem succulent species was low (60 mmol m^–2 s^–1) and yet, the leaf conductance decreased through the day similar to adjacent evergreen and deciduous species. The leaves of the stem succulent trees lost turgor at low saturated water deficits (0.06 to 0.14), had comparatively high osmotic potentials, and high values of elastic modulus in comparison to adjacent evergreen and deciduous species. The stem acts as an important buffering mechanism allowing for the maintenance of leaf turgor in these stem succulent trees. The low transpiration rates of the stem succulent trees may be a mechanism to minimize leaf saturated water deficit and extend leaf longevity.     

Low nuclear DNA variation supports a recent origin of Hawaiian Hylaeus bees (Hymenoptera: Colletidae)

Previous phylogenetic work on the Hawaiian bees of the genus Hylaeus, based on mitochondrial DNA and morphology, appeared to support a recent origin for the group, but support for the resulting tree was weak. Four nuclear genes with varying evolutionary rates -- arginine kinase, EF-1alpha, opsin, and wingless -- were sequenced for a reduced taxon set in an attempt to find one or more data set that would provide better support. All showed very low variation (<2%) in the ingroup. Comparison among genes revealed a much higher than expected rate of evolution in mtDNA, especially at first and second positions. While the data from the nuclear genes showed insufficient variation for phylogenetic analysis, the strong sequence similarity among the Hawaiian species supports the previous hypothesis of a recent origin for the group.     

Genetic isolation and evolutionary history of oases populations of the Baja California killifish,Fundulus lima

The Baja California killifish, Fundulus lima, is found in six desert oases of the southern Baja California Peninsula, Mexico. The recent introduction of exotic fishes, particularly redbelly tilapia, have impacted the ecology of Fundulus lima such that it is now endangered. Plans of relocating F. lima to bodies of freshwater that are free of exotics have been proposed, however little is know about the genetic identity of the current populations. In this study, we examined the mitochondrial control region of F. lima samples from 4 oases, and in addition, compared these samples to their sister species, the California killifish F.␣parvipinnis. Using a combination of phylogenetic and coalescent approaches, we were able to determine that the two subspecies of the California killifish, F. p.␣brevis, and F. p. parvipinnis, and F. lima form an unresolved trichotomy that diverged between 200,000 years and 400,000 years ago. The one F. lima individual that we were able to collect in the southernmost oasis grouped with the southern subspecies of the California killifish, F. parvipinnis brevis. In contrast, we found that the 3 northern oases grouped together in a “Fundulus lima” clade. Each oasis is genetically distinct, yet there is no evidence of a␣marked genetic bottleneck in any populations (Haplotype diversity between 0.5 and 0.8). Future relocation plans will therefore need to be done cautiously to preserve the genetic identity of the original populations.     

A new species of Sanicula L. (Umbelliferae/Apiaceae) endemic to Baja California, Mexico

A new species of the genusSanicula (sect.Sanicoria) endemic to the southern Sierra Juárez of Baja California, Mexico, is described and illustrated.Sanicula moranii resemblesS. deserticola andS. bipinnatifida, but has thicker basal leaves, with broader petioles and rachises, and shorter fruit prickles that are confined to the apical part of the mericarps. The taxonomic relationships of these species are discussed, along with aspects of their distribution and habitat.

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Resumen  Una neuva especie del géneroSanicula (secciónSanicoria) endémica de la Sierra Juárez de Baja California, México, es descrita e ilustrada.Sanicula moranii presenta similitud conS. deserticola yS. bipinnatifida, no obstante tiene gruesas hojas basales con pecíolos y raquis anchos, y espínulas del fruto más cortas que se distribuyen únicamente en la parte apical de los mericarpos. Además, se comentan las relaciones taxonómicas de las tres especies, así como algunos aspectos de sus distribuciones y hábitats.

     

Deep genealogical history without population differentiation: discordance between mtDNA and allozyme divergence in the zebra-tailed lizard (Callisaurus draconoides)

The peninsula of Baja California has a complex geological history that has strongly affected the regional biota. Genealogical histories of many species have revealed congruent patterns, which suggest that the peninsula was temporarily submerged at two locations. We sequenced a total of 1953 base pairs (bp) of the mitochondrial genome for 42 specimens of the zebra-tailed lizard (Callisaurus draconoides). The resulting maternal genealogy supports the former existence of a mid-peninsular seaway and a Plio-Quaternary seaway across the Isthmus of La Paz. In addition, a genealogical break is revealed in the vicinity of Loreto. This genealogical break may have resulted from prolonged submergence of the Loreto Basin during Pliocene. The mid-peninsular seaway may have occurred as early as late Miocene, at a time significantly earlier than previously hypothesized. Comparison with other genealogies and geological evidence suggests that current models on the evolution of Baja California's fauna are temporally shallow. The deep genealogical patterns of C. draconoides also disagree with the very limited population differentiation previously reported for allozyme markers, suggesting that maternal history may not be an appropriate approximation for population differentiation.     

Two new Marina (Leguminosae) from the southern Baja California peninsula, Mexico

Marina victoriae andM. brevis are newly described species from the southern Baja California peninsula, Mexico. The former is a perennial herb locally abundant in the eroded hillsides at the foothills of Sierra de la Victoria, where an oak woodland and a dry tropical forest meet. The latter is an elusive ephemeral inhabiting a narrow strip of land between the mangroves and the desert scrub on an island in the Gulf of California. These two new species belong to the seriesChrysorrhizae, a group native to the Gulf of California basin.     

Loureirophonte psammophila,a new species of Laophontidae T. Scott, 1904 (Copepoda: Harpacticoida) from Baja California,Mexico

Loureirophonte psammophila n. sp. was collected from coarse sediments of a beach near La Paz, Baja California, Mexico. The species belongs to the subterranea-group as defined by Fiers (1993). It differs from the other representative of the group, L. subterranea (Lang, 1965) in the presence of an outer dentiform process on 2nd segment of the antennula, the chaetotaxy of P.2–P.5 and the 1-segmented male endopodite P.4. A map with the distribution of the eleven species known so far is provided.     

Radiation, multiple dispersal and parallelism in the skinks, Chalcides and Sphenops (Squamata: Scincidae), with comments on Scincus and Scincopus and the age of the Sahara Desert

Phylogenetic analysis using up to 1325 base pairs of mitochondrial DNA from 179 specimens and 30 species of Chalcides, Sphenops, Eumeces, Scincopus and Scincus indicates that Sphenops arose twice independently within Chalcides. It is consequently synonymized with that genus. Chalcides in this broader sense originated in Morocco, diversifying into four main clades about 10 Ma, after which some of its lineages dispersed widely to cover an area 40 times as large. Two separate lineages invaded the Canary Islands and at least five main lineages colonized southern Europe. At least five more spread across northern Africa, one extending into southwest Asia. Elongate bodies with reduced limbs have evolved at least four times in Chalcides, mesic 'grass-swimmers' being produced in one case and extensive adaptation to life in loose desert sand in two others. In clade, Chalcides striatus colonized SW Europe from NW Africa 2.6 Ma and C. chalcides mainland Italy 1.4 Ma, both invasions being across water, while C. c. vittatus reached Sardinia more recently, perhaps anthropogenically, and C. guentheri spread 1200km further east to Israel. C. minutus is a composite, with individuals from the type locality forming a long independent lineage and the remaining ones investigated being most closely related to C. mertensi. In the Northern clade, C. boulengeri and C. sepsoides spread east through sandy habitats north of the Sahara about 5 Ma, the latter reaching Egypt. C. bedriagai invaded Spain around the same time, perhaps during the Messinian period when the Mediterranean was dry, and shows considerable diversification. Although it is currently recognized as one species, the C. ocellatus clade exhibits as much phylogenetic depth as the other main clades of Chalcides, having at least six main lineages. These have independently invaded Malta and Sardinia from Tunisia and also southwest Arabia C. o. humilis appears to have spread over 4000 km through the Sahel, south of the Sahara quite recently, perhaps in the Pleistocene. In the Western clade of Chalcides, C. delislei appears to have dispersed in a similar way. There were also two invasions of the Canary Islands: one around 5 Ma by C. simonyi, and the other about 7 Ma by the ancestor of C. viridanus+C. sexlineatus. C. montanus was believed to be related to C. lanzai of the Northern clade, but in the mtDNA tree it is placed within C. polylepis of the Western clade, although this may possibly be an artifact of introgression. The Eumeces schneideri group, Scincopus and Scincus form a clade separate from Chalcides. Within this clade, the geographically disjunct E. schneideri group is paraphyletic. One of its members, E. algeriensis is the sister taxon to Scincopus, and Scincus may also be related to these taxa. The phylogeny suggests Scincopus entered desert conditions in Africa, up to 9.6 Ma and the same may have been true of Scincus up to 11.7 Ma. Scincus appears to have diversified and spread into Arabia around 6 Ma. Dates of origin and divergence of these skinks, desert Chalcides and other squamates agree with recent geological evidence that the Sahara is at least 5-7 My old. The subspecies Chalcides viridanus coeruleopunctatus is upgraded to the species level as C. coeruleopunctatus stat nov., on the basis of its large genetic divergence from C. v. viridanus.     

Paralytic shellfish toxin profile in strains of the dinoflagellate Gymnodinium catenatum Graham and the scallop Argopecten ventricosus G.B. Sowerby II from Bahía Concepción, Gulf of California, Mexico

Gymnodinium catenatum Graham is a paralytic shellfish poison (PSP) producer that was described for the first time from the Gulf of California in 1943. During the last decade, its distribution along the Mexican Pacific coastline has increased. In Bahía Concepción, a coastal lagoon on the western side of the Gulf of California, G. catenatum has been linked to significant PSP concentrations found in mollusks. In this study, we describe the saxitoxin profile of 16 strains of G. catenatum, and catarina scallops (Argopecten ventricosus) from Bahía Concepción. Toxins were analyzed by HPLC with post-column oxidation and fluorescence detection. The average toxicity of the G. catenatum strains was 26.0±6.0 pg and 28.0±18.0 pg STX eq/cell after 17 and 22 days of growth, respectively. Ten toxins were recorded, but only dcSTX, dcGTX2, dcGTX3, C1, and C2 were always present in all strains at both growth stages. Since toxin profiles in scallops were similar to the cultures, biotransformations are not significant in catarina scallop. NeoSTX, GTX2, GTX3, and B2 were present in some G. catenatum strains and their presence varied with the age of the culture. In scallop samples, dcSTX, dcGTX2, and dcGTX3 were the most abundant toxins, and from the C-toxin group, only C2 was found. This unique toxin profile can be used as a biomarker for this population, when compared with strains of G. catenatum from other geographic regions.     

Species boundaries in Malagasy snakes of the genus Madagascarophis (Serpentes: Colubridae sensu lato) assessed by nuclear and mitochondrial markers

We studied mitochondrial divergence in 27 individuals of colubrid snakes of the genus Madagascarophis Mertens from most of its distribution area in Madagascar. Combined analyses of 16S rRNA and cytochrome b sequences identified six major clades which only partly agreed with previously proposed classifications. Analysis of nuclear DNA sequences of the c-mos gene as well as of ISSR fingerprints revealed consistent differences only among three clades which we consider as distinct species: a widespread Madagascarophis colubrinus (Schlegel), with M. citrinus (Boettger) as a junior synonym, a southern M. meridionalis Domergue, and a presumably undescribed species from the extreme north of Madagascar. The species M. ocellatus Domergue was not available for our study. Within M. colubrinus there are two populations from the north-west, each showing two divergent haplotypes with pairwise divergences of up to 5.2% in the cytochrome b gene. Maximum divergence in this gene within M. colubrinus was 7.1%. These high values emphasise that caution needs to be applied before genetic distance values are used for species delimitation. Phylogeographically, most of the genetic variation in M. colubrinus is found in northern Madagascar, indicating that the species might have originated in this region. Later one haplotype clade colonised western and eastern Madagascar, with a putative secondary introgression into north-western populations.     

Hierarchical genetic structure in fragmented populations of the Little Pocket Mouse (Perognathus longimembris) in Southern California

The geographic genetic structure, based onsequence variation of an 810 base pair fragmentof the mitochondrial cytochrome b gene,is described for populations of five subspeciesof the Little Pocket Mouse, Perognathuslongimembris, from Southern California. Oneof these, P. l. pacificus (Pacific PocketMouse), is listed as Endangered by the U.S.Federal Government. Sixty-two uniquehaplotypes were recovered from 99 individualssampled. Phylogenetic analyses of thesevariants do not identify regionallyreciprocally monophyletic lineages concordantwith the current subspecies designations, butmost haplotypes group by subspecies in networksgenerated by either statistical parsimony ormolecular variance parsimony. Moreover, asubstantial proportion of the total pool ofhaplotype variation is attributed to thesesubspecies, or to local populations withingeographic segments of each, indicating theirrelative evolutionary independence. The pooledextant populations of the endangered PacificPocket Mouse exhibit the same levels ofnucleotide and haplotype diversity as other,presumptively less-impacted populations ofadjacent subspecies, although the sample fromDana Point, Orange County, has markedly lowhaplotype diversity in comparison to allothers. These populations also show a geneticsignature of population expansion rather thanone of decline. Both pieces of evidence are atodds with current empirical populationestimates, which reinforces the fact thatpresent-day patterns of genetic diversity arethe product of coalescent history and will notnecessarily reflect recent anthropogenic, orother, perturbations. Comparison of haplotypevariation within and among extant populationsof the Pacific Pocket Mouse with those obtainedfrom museum samples collected more than 70years ago suggests that the pattern ofpopulation differentiation and diversity was inplace before the post-World War II exponentialurbanization of Southern California.     

Morphological and genetic analysis of the Red Hills roach (Cyprinidae: Lavinia symmetricus)

We performed a morphological and phylogeneticanalysis of a recently discovered population ofCalifornia roach (Red Hills roach; Cyprinidae:Lavinia symmetricus) to determine if thedegree of separation of these populationswarrants subspecies status. Previousmorphological analysis by Brown et al. (1992)suggested that L. symmetricus from theRed Hills roach type locality (Horton Creek)were different for Principal DiscriminantScores (based on 15 morphological characters)from neighboring populations. Similarly,recent work by our lab on the phylogenetics ofthe putative subspecies of L. symmetricushas revealed that the Red Hills roach appearsreciprocally monophyletic for assayedmitochondrial DNA markers. In addition toperforming further morphological and geneticanalysis of the Red Hills roach, we increasedour sampling effort in the Red Hills region todetermine the distribution of this undescribedputative subspecies. Our morphological resultsare generally in agreement with Brown et al.(1992) except in regards to Horton Creek. Asignificant difference between the two studiesexists for all Horton Creek multivariateanalyses as well as frequency of a presumablyderived character (chisel lip). Our geneticresults also support our previous findings thatthe Red Hills roach is a diagnosible,genetically distinct population. Thephylogenetic analysis suggests that populationson the other side of a large reservoir wererecently connected via gene flow to the RedHills populations.     

Theropithecus and 'Out of Africa' dispersal in the Plio-Pleistocene

Theropithecus oswaldi was one of the most widely distributed Plio-Pleistocene primates, found in southern, East, and North Africa, as well as in Spain, India, and possibly Italy. Such a large geographic range for a single primate species is highly unusual. Here, the nature and timing of its dispersal is examined using the Stepping Out cellular automata model. A hypothetical dispersal of T. darti is also modelled to assess whether the late Pliocene might have been a more favorable period for Afro-Eurasian dispersal than the early Pleistocene. Stepping Out draws on climatic and biome reconstruction to provide the paleovegetative and climatic background necessary for the simulations, and model parameters for T. oswaldi and T. darti were set a priori on the basis of their fossil records and paleobiologies. The simulations indicate that T. darti could have readily left Africa in the Pliocene, and that it swiftly reaches Asia. A European T. darti colonization was less certain and less rapid. The simulated T. oswaldi dispersal out of Africa was slower, but nonetheless T. oswaldi arrived at Mirzapur within the time period indicated by the fossil record. Using the a priori parameters, T. oswaldi did not arrive at the European sites of Cueva Victoria and Pirro Nord. It cannot be discounted, therefore, that some of the European fossils are a result of an earlier T. darti dispersal. The simulations also showed that in order for Theropithecus to reach Europe, it needed to be tolerant of a relatively wide range of habitats. In addition, our finding that Asian colonization was more rapid and more probable parallels the information from the hominin fossil record, in which the fossils from Asia predate those from Europe by several hundred thousand years.