Application of diffusiophoresis and the Stefan flow effects for sampling microorganisms,pollen, spores etc

The possibility to apply diffusiophoresis and the Stefan flow effects in a new type of sampler was investigated. The advantages of the later are significant compared with other sampler desingns, since it gives representative samples that can subsequently analysed by the methods of optic and electron microscopy. The low particle deposition velocity keeps microorganisms intact, on the other hand, the small depence of the particles' deposition velocity upon their sizes makes the separation of the analyzed aerobiological objects impossible. As a result, the representativness of samples is secured. In this paper the sampler design is described and its working conditions (heat, hydrodynamic) are analyzed.     

EN CORE® Sampler Performance: Storing Soil for VOC Analysis

The En Core® sampler is designed to collect and store soil samples in a manner that minimizes loss of contaminants due to volatilization and/or biodegradation. Use of this device is described in American Society for Testing and Materials (ASTM) Practice D 6418, Standard Practice for Using the Disposable En Core Sampler for Sampling and Storing Soil for Volatile Organic Analysis. Two studies were performed to evaluate the performance of the En Core sampler to store VOC-contaminated soil for analysis. One study involved spiking soil samples with low concentrations of VOCs (less than 200?µg/kg) and storing them under various conditions prior to analysis. Results from this study show that the En Core sampler gives 80% or greater recoveries of low concentrations of VOCs from soil samples stored under a number of conditions. The second study was performed to generate data on the performance of the 25-g En Core sampler to store soil samples spiked with EPA Method 1311, Toxicity Characteristic Leaching Procedure (TCLP), volatile organic analytes. Results show that the En Core device gives 80% or greater recoveries of most of the Method 1311 volatile organic analytes from soil stored under various conditions for 14 days.     

A new quantitative air-lift sampler for collecting macroinvertebrates on stony bottoms in deep rivers

SUMMARY. 1. As three previous comparative studies of deep-water samplers for benthic macroinvertebrates in rivers highlighted the need for a quantitative sampler for use on stony substrata, a new air-lift sampler was developed. It can be operated from a small boat by two people, weighs 13.5–20.0 kg, depending on the length of riser used, and extends the maximum range of substrata that may be sampled quantitatively from 16–32 mm to 128—256 mm. The sampling area is isolated by forcing a collecting cylinder into the substratum, and rapid evacuation of the contents is assisted by a vibrator.
2. All the major specifications of the sampler were determined experimentally in a large tank using three sizes of substrata and plastic pellets to represent invertebrates. The sampler performed accurately to a depth of at least 8 cm on substrata ranging from gravel (2–4 mm) to large stones (32–36 mm long).
3. The performance of the sampler was compared with that of a Ponar grab and Pearson el at. air-lift sampler at two sites on a large river and also with a Naturalist's dredge and a diver-operated Hess-Waters sampler at one of the sites where there were large stones up to 280 mm long. In terms of both mean taxa per sample and mean numbers m⁻², samples taken using the new air-lift sampler provided estimates comparable to or belter than those obtained with the other samplers.     

Automatic mechanical alveolar gas sampler for multiple-sample collection in field

A mechanical alveolar gas sampler using the revolver principle capable of collecting six individual expired gas samples is described. The 0.91-kg sampler collects 19-ml samples in pre-evacuated aluminum ampoules equipped with spring-loaded valves from a sampling chamber equipped with two removable one-way valves. On depression of external handles, one of six ampoules located in a removable cartridge is aligned and advanced into the sampling chamber where its valve is opened and then closed. Releasing the handles removes the ampoule from the sampling chamber and automatically rotates the cartridge through 60 degrees to position a new ampoule in preparation for the next sampling sequence. A lock-out mechanism prevents reexposure of any of the ampoules after six samples have been taken. The performance of the sampler is described including its successful use in the field to collect alveolar gas samples on the summit of Mount Everest.     

Improvement of terrestrial groundwater sampling method affects microbial community analysis

Groundwater sampling is a critical step in subsurface microbial ecology. Here, we compared two different sampling methods: commonly used disposable bailers (unimproved sampler) and an improved sampler, the latter of which was devised to minimize exposure to the aerobic atmosphere. Microbial community analysis using the 16S rRNA and methyl coenzyme-M reductase (mcrA) genes in the lignite seam groundwater revealed that the archaeal communities in samples obtained by the improved sampler were dominated by hydrogenotrophic methanogen Methanobacterium. These results suggested that the improved sampler would be more favorable for obtaining methanogenic archaeal community than the unimproved one, and that the sampling method affected the microbial community analysis in the investigated subterranean lignite seams.     

A pneumatically-operated water sampler for close intervals of depth

A pneumatically-operated sampler for collecting water samples at close intervals of depth in lakes is described. The sampler uses plastic disposable syringes and may be operated at various depths and at the mud-water interface. Examples of results obtained with the sampler are given.     

Clinical Chemical Comparative Examination of Ruminal Samples Collected by Means of a Naso-Ruminal Sampler

Samples of ruminal fluid collected with the COMET naso-ruminal sampler and by two other methods through fistula were subjected to comparative clinical chemical examination. It was found that the mean values of pH and buffer capacity were nearly identical for all three methods. The greatest variation between the methods were found for reduction time of methylene blue owing to different dry matter contents in the samples. The VFA contents were nearly identical in all three samples. In conclusion, it was found that it is possible to obtain ruminal samples that are representative of the biochemical status in the rumen by means of the COMET naso-ruminal sampler in non-fistulated cows.     

A moorable,automated plankton sampler

A moorable, automated plankton sampler is described, designed to obtain series of plankton samples over extended time periods in the absence of a surface vessel. The sampler consists of one or more net-containing boxes, a unit for generating as well as measuring water flow through the net boxes, a programmeable control unit, and a frame. Each net box contains several nets on a vinyl strip, used to move the nets from the storage chamber into the fishing position and then into the preservative chamber. Preservation of samples is in a formalin-brine mixture.Net boxes can be added and the number of nets per box changed; the prototype is described with 1 net box with 10 nets. Volume of water to be filtered, time between sample collections, number of net boxes and the number of nets in each box is programmed into the control unit before sampler deployment. Collections made with the sampler are compared with those made with a SCOR net and a pump.     

Comparison of two biological aerosol sampling methods

Two biological aerosol samplers, the Andersen two-stage microbial impactor and the May three-stage glass impinger, were examined to determine the benefits and effectiveness of the May sampler compared with the Andersen sampler, one of the most widely accepted samplers. Side-by-side samples were collected during simulated wastewater spray irrigation dispersion studies. Escherichia coli colony counts and air concentrations were statistically treated to determine the dependability of the May results with respect to the Andersen results. After data pairs containing potentially overloaded Andersen counts were eliminated, a linear regression of the remaining data was performed. It indicates that although the May sampler reports 82% of the Andersen sampler value, the correlation between the two samplers is good with an r2 value of 0.84. This comparison indicates that although there are differences between the two samplers, they do give comparable results and that when both are used in a sampling program, they tend to complement each other.     

Comparison of two biological aerosol sampling methods.

Two biological aerosol samplers, the Andersen two-stage microbial impactor and the May three-stage glass impinger, were examined to determine the benefits and effectiveness of the May sampler compared with the Andersen sampler, one of the most widely accepted samplers. Side-by-side samples were collected during simulated wastewater spray irrigation dispersion studies. Escherichia coli colony counts and air concentrations were statistically treated to determine the dependability of the May results with respect to the Andersen results. After data pairs containing potentially overloaded Andersen counts were eliminated, a linear regression of the remaining data was performed. It indicates that although the May sampler reports 82% of the Andersen sampler value, the correlation between the two samplers is good with an r2 value of 0.84. This comparison indicates that although there are differences between the two samplers, they do give comparable results and that when both are used in a sampling program, they tend to complement each other.     

Composite Sampling of a Bacillus anthracis Surrogate with Cellulose Sponge Surface Samplers from a Nonporous Surface

A series of experiments was conducted to explore the utility of composite-based collection of surface samples for the detection of a Bacillus anthracis surrogate using cellulose sponge samplers on a nonporous stainless steel surface. Two composite-based collection approaches were evaluated over a surface area of 3716 cm² (four separate 929 cm² areas), larger than the 645 cm² prescribed by the standard Centers for Disease Control (CDC) and Prevention cellulose sponge sampling protocol for use on nonporous surfaces. The CDC method was also compared to a modified protocol where only one surface of the sponge sampler was used for each of the four areas composited. Differences in collection efficiency compared to positive controls and the potential for contaminant transfer for each protocol were assessed. The impact of the loss of wetting buffer from the sponge sampler onto additional surface areas sampled was evaluated. Statistical tests of the results using ANOVA indicate that the collection of composite samples using the modified sampling protocol is comparable to the collection of composite samples using the standard CDC protocol (p  =  0.261). Most of the surface-bound spores are collected on the first sampling pass, suggesting that multiple passes with the sponge sampler over the same surface may be unnecessary. The effect of moisture loss from the sponge sampler on collection efficiency was not significant (p  =  0.720) for both methods. Contaminant transfer occurs with both sampling protocols, but the magnitude of transfer is significantly greater when using the standard protocol than when the modified protocol is used (p<0.001). The results of this study suggest that composite surface sampling, by either method presented here, could successfully be used to increase the surface area sampled per sponge sampler, resulting in reduced sampling times in the field and decreased laboratory processing cost and turn-around times.     

Evaluation of various soil water samplers for virological sampling.

Two commercially available soil water samplers and a ceramic sampler constructed in our laboratories were evaluated for their ability to recover viruses from both tap water and secondary sewage effluent. The ceramic sampler consistently gave the best recoveries of viruses from water samples. Soil columns containing ceramic samplers at various depths provide a simple method for studying virus transport through sewage-contaminated soils.     

A comparative study of three air-lift samplers used for sampling benthic macro-invertebrates in rivers

SUMMARY. From 16 air-lift samplers described in the literature, three were selected for operation from a small boat: Mackey, Pearson et al. and Verollet & Tachet samplers. Random samples (number of sampling units n= 10) were taken in a large tank with a known number of dried peas, representing invertebrates, amongst stones of uniform size. Separate experiments were performed with three sizes of stones (modal sizes 2–4, 16–20 and 32–36 mm). Stratified-random samples (usually n= 10) were taken in rivers at lour sites with modal particle sizes of < 0.1 2–4. 32–128 and 64–128 mm. The samplers were compared with a Ponar grab in the tank experiments and the field, and with a Naturalist's dredge in the field. Rates of pumping at different air-flows were established for each sampler. Water-How increased with increasing air-How and increasing submergence of the riser-pipe. The Mackey sampler achieved the highest water-flow and lifted more substratum and larger stones (64–128 mm) than the other samplers. The Verollet & Tachet sampler had the lowest pumping rate and failed to lift stones > 8 mm long, whilst the Pearson et al. sampler, with an intermediate performance, lifted mud and stones < 32 mm long. In the tank experiments, the area from which the Mackey and Pearson et al. samplers collected peas varied with air-flow, operating time and type of substratum. The Maekey sampler over-sampled and the Pearson et al. sampler usually under-sampled their respective sampling areas, except the latter sampler at high air-flows gave approximately quantitative results comparable to those of the Ponar grab for peas on the surface of stones 16–20 mm. No sampler collected much at a depth of 3 cm on larger stones (32–36 mm), and the Verollet & Tachet sampler failed completely on all substrata. In field trials, the Mackey and Pearson et al. samplers provided good qualitative samples except on large stones (32–128mm). The Verollet & Tachet sampler lifted little material. The relative abundance of taxa often differed between samplers. Estimates of the number of invertebrates per m² differed widely between samplers except for the Pearson et al. and Ponar grab which gave similar quantitative results at three sites. Values were very low for the Verollet & Tachet sampler and Naturalist's dredge and always very high for the Mackey sampler which often grossly over-sampled its sampling area. Therefore, these three samplers cannot be considered as quantitative. The relationship between the variances and the means of samples of peas in the tank and most invertebrates in the field followed a power law with values of the exponent b in the range 1.13–2.51. The present study completes the evaluation of 14 samplers used to sample benthic macro-invertebrates in deep rivers, and the more important conclusions from the comparative studies of seven grabs, four dredges and three air-lift samplers are summarized in a table.     

Evaluation of various soil water samplers for virological sampling

Two commercially available soil water samplers and a ceramic sampler constructed in our laboratories were evaluated for their ability to recover viruses from both tap water and secondary sewage effluent. The ceramic sampler consistently gave the best recoveries of viruses from water samples. Soil columns containing ceramic samplers at various depths provide a simple method for studying virus transport through sewage-contaminated soils.     

Modification of a freshwater sampler using evacuated tubes for microbial collections

The modification of a freshwater sampler utilizing three evacuated tubes for the collection of microbial samples is described. To avoid contamination sterile hypodermic needles covered with rubber sleeves are inserted into the evacuated tubes prior to lowering the sampler. At the requisite depth each sleeve is pushed down over the end of the needle so that the tubes fill with water.     

A quantitative sampler for collecting invertebrates associated with deep submerged vegetation

Only few of the numerous samplers for collecting invertebrate fauna associated with vegetation permit sampling at depths of more than approximately 0.5 m. This paper describes a sampler allowing collection of epifauna from submerged plants at a depth of up to approximately 2 m, growing in varied densities. The sampler is composed of two panels made of duralumin, connected on one side by means of piano-hinges. One of the panels has an opening covered with mesh, and the other is equipped with a cone-shaped net and detachable sample concentrator at its end. The sampler is coupled with a manipulator with a several meter extension for lowering the sampler under water, as well as for its opening, and closing. The initial assessment of the sampler efficiency, verified in beds of Potamogeton perfoliatus, provided similar results as two other, older and commonly used samplers. In comparison with the older devices, the sampler has the advantage of permitting collecting samples from greater depths. It also enables studying both the vertical and horizontal distribution of invertebrates within a plant patch.     

Microscale patchiness of plankton within a sharp pycnocline

Microscale distributions of plankton around the pycnocline werestudied over a 24 h period in the southern Kattegat, using agradient sampler which collects 20 samples over a 3 m depthinterval. Moderately elevated concentrations of phyto- and zooplanktonwere observed at the pycnocline. Microscale variance was highestfor adult copepods. Nauplii and copepodites were equally wellrepresented by sampling with ordinary vertical 5 1 water bottlesas with the horizontal 1.5 1 bottles of the gradient sampler.Adult copepods were underestimated by the vertical bottles.No vertical migration of dinoflagellates was observed over the3 m interval covered by the gradient sampler. Microscale correlationsbetween copepods and phytoplankton within the gradient samplerwere weak. Copepodites (mainly Oithona sp.) and the dinoflagellateProrocentrum micans showed the best correlation.     

An image processing approach to computing distances between RNA secondary structures dot plots

Background  

In phylogenetic inference one is interested in obtaining samples from the posterior distribution over the tree space on the basis of some observed DNA sequence data. One of the simplest sampling methods is the rejection sampler due to von Neumann. Here we introduce an auto-validating version of the rejection sampler, via interval analysis, to rigorously draw samples from posterior distributions over small phylogenetic tree spaces.     

Microtiter assay for interferon: microspectrophotometric quantitation of cytopathic effect.

This report describes an accurate, reproducible, and efficient microassay for human interferon, using a dye-uptake method to quantitate cytopathogenicity. The antiviral activity was measured by using a Gilford 300-N microsepctrophotometer, with the automatic programmer, sampler, and data lister. Two hundred interferon samples, each in a final volume of 1.0 ml, may be analyzed and recorded in 45 min. The reproducibility of a laboratory reference interferon and the human international reference B 69/19 on two different cell lines, using the model Q Oxford sampler, was found to be excellent, with the standard error of the log10 geometric mean of both references +/- 0.04 to 0.06.     

A simple and inexpensive trap-tube sampler for zooplankton collection in shallow waters

The paper describes a new type of zooplankton sampler, which combines the concepts of the Pennak core sampler and the Schindler-Patalas plankton trap. The new sampler, called Trap Tube Sampler, consists of a PVC water pipe (1.5–2.0 m, long; 10 cm diameter) provided, at the bottom end, of a filtering unit and closing mechanism which alternatively closes the mouth of the tube and the mouth of the filtering unit. The new device is particularly suitable for collecting samples from the entire water column in shallow vegetated water bodies, fish ponds and mesocosm tanks.