Plumage brightness predicts non-breeding season territory quality in a long-distance migratory songbird, the American redstart Setophaga ruticilla

Many species of birds exhibit brilliant ornamental plumage, yet most research on the function and evolution of plumage has been confined to the breeding season. In the American redstart Setophaga ruticilla , a long-distance Neotropical-Nearctic migratory bird, the acquisition of a winter territory in high-quality habitat advances spring departure and subsequent arrival on breeding areas, and increases reproductive success and annual survival. Here, we show that males holding winter territories in high-quality, black mangrove habitats in Jamaica have brighter yellow-orange tail feathers than males occupying territories in poor-quality second-growth scrub habitats. Moreover, males arriving on the breeding grounds from higher-quality winter habitats (inferred by stable-carbon isotopes) also had brighter tail feathers. Because behavioral dominance plays an important role in the acquisition of winter territories, plumage brightness may also be related to fighting ability and the acquisition and maintenance of territories in high-quality habitat. These results highlight the need for further research on the relationships between plumage coloration, behavior, and the ecology of over-wintering migratory birds.     

Patterns and correlates of extrapair paternity in American redstarts (Setophaga ruticilla)

We examined correlates and hypotheses pertaining to extrapairfertilizations in socially monogamous American redstarts (Setophagaruticilla). DNA fingerprinting revealed extrapair fertilizationin 59% of broods (19 of 32), involving 40% of nestlings (43of 108). Fewer broods than expected had mixed paternity, asdetermined from a binomial distribution of extrapair young inthe population. This result is consistent with the "good genes"hypothesis, but not with the "genetic diversity" hypothesis.There was a negative association between the age of putativefathers and the proportion of extrapair young in their broods.Irrespective of age, males with prior residency were cuckoldedless often than males new to the study area. Extrapair fatherswere' immediate neighbors in 7 of 10 cuckolded broods whereall neighbors were sampled. Males were more likely to sire offspringin the territories of younger neighbors than in those of olderneighbors. Plumage characteristics of adult males, breedingsynchrony of females, and breeding densities were not significantlyassociated with cuckoldry. Realized reproductive gain from cuckoldrywas small because of high nest predation in our area. Extrapairfertilizations allowed one-quarter of males whose own nestshad failed to achieve some reproductive success. Only 2 of 17males whose own nests were successful also had extrapair young.There was no egg dumping by females. We conclude that male ageand prior residency were predictors of cuckoldry in Americanredstarts. In the context of the heavy predation experiencedby our birds, extrapair fertilizations allowed many males tosalvage some reproductive success and did not increase the varianceof success across males     

Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana)

The identification of species via morphological characteristics has traditionally left cryptic species undescribed in taxa under selection for morphological conservation (or a lack of selection for morphological change). Treecreepers (Genus: Certhia) have a conserved morphological appearance, making it difficult to ascertain relationships in the genus based on morphology alone. Recent genetic and song structure studies of Eurasian Treecreepers identified cryptic species within Old World Certhia that were previously undescribed using morphological characteristics. Here, we use mtDNA to investigate cryptic diversity and patterns of diversification in the Brown Creeper (Certhia americana), the single described Certhia species in the Americas. Phylogenetic analyses identified six well-supported geographically-structured clades; the basal divergence separates a northern and a southern lineage in the Brown Creeper, likely cryptic species previously characterized as many subspecies. Sympatry is prevalent between clades in western North America, where possible contact zones warrant further investigation. Allopatry appears to be the primary driver of deep phylogeographic structure within the Brown Creeper; however, within clade diversity is highly correlated with the life history traits of the populations that comprise the geographically structured phylogroups.     

Tracking habitat use of a long-distance migratory bird, the American redstart Setophaga ruticilla, using stable-carbon isotopes in cellular blood

The successful use of stable isotopes to track migratory animals between different seasons of the annual cycle depends, in part, on the turnover rate of isotopes in sample tissue. We examined whether stable-carbon isotopes in the blood of a long-distance migratory bird, the American redstart Setophaga ruticilla , sampled upon arrival to the temperate breeding grounds could be used to track the quality of habitat used the previous season on the tropical wintering grounds. Stable-carbon isotopes in red-blood cells sampled upon arrival (δ¹³C_RBC) were significantly less negative relative to: 1) plasma sampled upon arrival from the same individuals, 2) red-blood cells of redstarts recaptured more than a month later on the breeding grounds, and 3) nestling feathers grown at the same breeding location. δ¹³C_RBC was also significantly different between sexes, consistent with findings from the wintering grounds where sex-biased habitat use is known to occur. Although individuals likely integrate some isotopic signatures during migration, we provide evidence that cellular blood can be used to track the relative habitat use of migratory birds during the wintering period. Non-destructive methods of sampling stable-isotopes, such as this, are particularly useful because it provides a technique for tracking the patterns of habitat use and/or geographic location of migratory animals. Such approaches allow researchers to understand how events throughout the annual cycle interact to influence population dynamics.     

Isolation‐driven divergence: speciation in a widespread North American songbird (Aves: Certhiidae)

Lineage, or true ‘species’, trees may differ from gene trees because of stochastic processes in molecular evolution leading to gene‐tree heterogeneity. Problems with inferring species trees because of excessive incomplete lineage sorting may be exacerbated in lineages with rapid diversification or recent divergences necessitating the use of multiple loci and individuals. Many recent multilocus studies that investigate divergence times identify lineage splitting to be more recent than single‐locus studies, forcing the revision of biogeographic scenarios driving divergence. Here, we use 21 nuclear loci from regional populations to re‐evaluate hypotheses identified in an mtDNA phylogeographic study of the Brown Creeper (Certhia americana), as well as identify processes driving divergence. Nuclear phylogeographic analyses identified hierarchical genetic structure, supporting a basal split at approximately 32°N latitude, splitting northern and southern populations, with mixed patterns of genealogical concordance and discordance between data sets within the major lineages. Coalescent‐based analyses identify isolation, with little to no gene flow, as the primary driver of divergence between lineages. Recent isolation appears to have caused genetic bottlenecks in populations in the Sierra Madre Oriental and coastal mountain ranges of California, which may be targets for conservation concerns.     

Prevalence of hematozoa in overwintering American redstarts (Setophaga ruticilla): no evidence for local transmission

We examined American redstarts (Setophaga ruticilla) for protozoan blood parasites on their wintering grounds to determine whether transmission of these parasites occurs prior to spring migration. A total of 73 blood smears from 37 birds were examined for presence and intensity of infection. Thirty-six birds were sampled in the fall, soon after arriving from northern breeding grounds, and the spring prior to departure. Two (5%) of the samples collected in the fall were positive for Haemoproteus fringillae and one (3%) had detectable infections of Trypanosoma avium. Individuals infected with H. fringillae were hatching year redstarts sampled in September and October. Intensity of infection was 78 and < 1 infected erythrocytes per 10,000 erythrocytes, respectively. None of the birds had detectable infections when resampled prior to spring migration the following March.     

Fat stores of American redstarts Setophaga ruticilla arriving at northerly breeding grounds

Many long-distance passerine migrants arrive with more fat stores than necessary to have reached their northerly breeding grounds. Researchers have argued for adaptive advantages associated with arriving with 'surplus' migratory fat, including increased breeding performance and insurance against adverse weather, and reduced food resources during the days following arrival. The objectives of this work were to document fat stores in American redstarts Setophaga ruticilla arriving to breed in northern Michigan and to test predictions associated with the hypothesis that arrival fat serves an insurance role. Results suggest that redstarts arrived in northern Michigan with fat stores sufficient to have continued migrating an additional distance greater than 1000 km. Significant yearly variation in arrival fat corresponded in part with environmental conditions measured at the breeding grounds. Birds arrived with the most fat in the year with the coolest temperatures and the lowest food abundance at the time of arrival to the site. Further, an inverse relationship between arrival fat and arrival day in males indicated that early arrivals carried more fat than later arrivals. Birds that arrived early faced cooler temperatures and lower densities of terrestrial invertebrates, and arrival fat may have provided a mechanism to overcome poor early season foraging conditions. However, our results are not entirely consistent with the hypothesis that arrival fat serves only as insurance. Arrival fat appeared important even during the most benign year of this study. Further, evidence suggests that females may have derived more benefit from arrival fat than males. These results highlight the connection between phases of a bird's annual cycle. Migrants that do well en route , arrive at breeding grounds in better condition, which may contribute to survival and reproductive success.     

Phylogeography of a vanishing North American songbird: the Painted Bunting (<Emphasis Type="Italic">Passerina ciris</Emphasis>)

The breeding distribution of Painted Buntings (Passerina ciris) is comprised of two allopatric populations separated by a 550-km distributional gap in the southeastern United States. Curiously, the boundary between the two recognized P. ciris subspecies does not separate the two allopatric breeding populations but instead runs roughly through the center of the interior population. Genetic relationships among these subspecies, and the allopatric breeding populations of Painted Bunting, have not been assessed. Given the recent decline in overall abundance of this species, such an assessment is warranted. We sampled birds from 15 localities (138 individuals) and identified 35 distinct haplotypes, six belonging to the Atlantic Coast population and 26 to the interior population, with three shared by both populations. AMOVA results showed that a significantly greater portion of the total genetic variance is explained when grouping birds by the interior and Atlantic Coast populations rather than by subspecies. Furthermore, our data indicate that the Atlantic Coast and interior populations represent independently evolving taxa, with no measureable gene flow between them. Although recently diverged (26,000–115,000 years ago), these isolated bunting populations represent incipient species. For development of conservation strategies, we suggest that the Atlantic Coast and interior populations be recognized as separate management units.     

Pleistocene effects on North American songbird evolution

Recent studies have used comparisons of mitochondrial DNA (mtDNA) sequence divergence among populations and species to test existing hypotheses about avian evolution during the Pleistocene epoch. In 1998, Avise and Walker concluded that the Pleistocene was an important time for avian evolution, including the initiation of phylogeographic separations and the completion of speciation events that began in the Pliocene. The study implied that these conclusions conflicted with the study, in 1997, by Klicka and Zink, which concluded that most species pairs previously thought to have originated in the past 250 000 years were much older. The two studies are complementary in the sense that Avise and Walker dealt primarily with phylogeographic (intraspecific) separations. Furthermore, Klicka and Zink concentrated on the inception of divergences whereas the Avise and Walker focused on the timing of the completion of speciation. To accomplish this, Avise and Walker analysed ''phylogroups'', geographically coherent subsets of biological species in which mtDNA haplotypes exhibit reciprocal monophyly. The study used the average interphylogroup mtDNA distance (0.027), calibrated at 2% per million years, to conclude that speciation required on average one million years to complete. Hence, speciation events begun in the Late Pliocene would have been completed in the mid- to late Pleistocene. Although we appreciate the extended nature of the speciation process and Avise and Walker''s insightful attempt to estimate its duration, we conclude that their value was an overestimate by a factor of two. In particular we question whether phylogroups can be used in the novel evolutionary role that Avise and Walker envisioned, because of the vagaries of taxonomic practices and lack of consensus regarding species concepts. To extend their analysis of intraspecific, phylogeographic separations, we compiled previously analysed and newly available data for divergence times for North American songbird (order Passeriformes) phylogroups. More than 80% were initiated at least one million years ago, which is inconsistent with the late Pleistocene origins model previously rejected by Klicka and Zink mentioned above. Although some divergence events can be traced to the late Pleistocene, the significance of the distribution must be judged with reference to a null model. Whether the Pleistocene was a profound time for avian phylogeographic differentiation is at present unknown.     

Phylogeography of an endangered Western North American springsnail

We provide the first genetic analysis of the Bruneau Hot Springsnail (Pyrgulopsis bruneauensis), a federally listed (endangered) hydrobiid gastropod that is distributed in spring-fed habitats along a short reach of the Bruneau River in southwestern Idaho and threatened with extinction by groundwater withdrawal. Partial sequences of mitochondrial cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit I (NDI) were obtained from 51 specimens from six sites spanning the narrow geographic range of P. bruneauensis. A Bayesian analysis of the combined dataset resolved this species as a well supported clade which differed from other regional congeners by 4.66–10.62% sequence divergence (COI). The 11 observed COI haplotypes in P. bruneauensis formed two divergent (1.42 ± 0.7%) subgroups that co-occurred at five of the six collecting sites. COI haplotype diversity was substantial (ranging up to 0.9111) in all but one sample, while nucleotide diversity was low (<0.01). AMOVA detected small but significant variation among sites, although only one sample was significantly differentiated by pairwise comparisons. Haplotype composition varied widely among the collecting localities and no obvious geographic pattern was detected. These findings suggest that translocation of snails, which was considered as a possible measure in the P. bruneauensis recovery plan, should be preceded by assays to ensure selection of appropriately genetically diverse source populations.     

Phylogeography of a facultatively migratory dragonfly, Libellula quadrimaculata (Odonata: Anisoptera)

The biogeography of a widely distributed dragonfly (Libellula quadrimaculata) was examined via a phylogenetic analysis of 416 bp of the mitochondrial cytochrome oxidase I subunit (COI). Phylogenetic analyses under parsimony and minimum evolution produced trees with similar topologies, and revealed strong support for three clades corresponding to populations in Asia, Europe and North America. However, resolution was poor within clades, and genetic distances between populations within continents was quite low (1–2%). Several populations of this species are known to engage in periodic mass migrations, and it is possible that introgression from gene flow due to the mobility of this species has obscured phylogenetic patterns within continents. I was unable to test for phylogenetic patterns coincident with historical glacial refugia given the lack of phylogenetic patterns within continents. However, given that some sequence divergence was observed between populations within continents, it is possible that phylogenetic patterns exist, and subsequent studies should make use of larger data sets, and molecular data from faster evolving genes. Despite the propensity for periodic, short distance migrations in L. quadrimaculata, gene flow appears to be limited and does not influence the phylogenetic relationships of populations between continents.     

Agricultural management affects evolutionary processes in a migratory songbird

Hay harvests have detrimental ecological effects on breeding songbirds, as harvesting results in nest failure. Importantly, whether harvesting also affects evolutionary processes is not known. We explored how hay harvest affected social and genetic mating patterns, and thus, the overall opportunity for sexual selection and evolutionary processes for a ground-nesting songbird, the Savannah sparrow ( Passerculus sandwichensis ). On an unharvested field, 55% of females were in polygynous associations, and social polygyny was associated with greater rates of extra-pair paternity (EPP). In this treatment, synchrony explained variation in EPP rates, as broods by more synchronous females had more EPP than broods by asynchronous females. In contrast, on a harvested field, simultaneous nest failure caused by haying dramatically decreased the overall incidence of EPP by increasing the occurrence of social monogamy and, apparently, the ability of polygynous males to maintain paternity in their own nests. Despite increased social and genetic monogamy, these haying-mediated changes in mating systems resulted in greater than twofold increase in the opportunity for sexual selection. This effect arose, in part, from a 30% increase in the variance associated with within-pair fertilization success, relative to the unharvested field. This effect was caused by a notable increase (+110%) in variance associated with the quality of social mates following simultaneous nest failure. Because up to 40% of regional habitat is harvested by early June, these data may demonstrate a strong population-level effect on mating systems, sexual selection, and consequently, evolutionary processes.     

Phylogeography and pleistocene evolution in the North American black bear

To determine the extent of phylogeographic structuring in North Americanblack bear (Ursus americanus) populations, we examined mitochondrial DNAsequences (n = 118) and restriction fragment length polymorphism profiles(n = 258) in individuals from 16 localities. Among the bears examined, 19lineages falling into two highly divergent clades were identified. Theclades differ at 5.0% of nucleotide positions, a distance consistent withan origin 1.8 MYA, and have different but overlapping geographicaldistributions. Areas of clade cooccurrence show that eastern and westernpopulations are currently mixing, but regional differences in lineagedistribution suggest that mixing has begun only recently. The long-termpopulation history of black bears appears to be characterized predominantlyby long-term regional isolation followed by recent contact andhybridization. Congruence between the pattern of diversity observed inblack bears and patterns of forest refuge formation during the Pleistocenesupports earlier speculation that Pleistocene forest fragmentationsunderlie a common pattern in the phylogeography of North American foresttaxa.     

Phylogeography of the white-breasted nuthatch (Sitta carolinensis): diversification in North American pine and oak woodlands

Pine and oak woodlands are common North American floral communities with distinct regional species composition. The white-breasted nuthatch (Aves: Sitta carolinensis) is a common resident bird of North American pine and oak woodlands, and is distributed continentally across the highly disjunct distribution of these woodlands. We propose three historical hypotheses to explain the evolution of the white-breasted nuthatch in its principal habitat. (i) The species evolved in situ in the regional pine-oak communities and the isolation of populations in these regions is captured in cryptic genetic variation. (ii) Migration of individuals between regions is frequent enough to maintain the widespread distributions and prevent regional divergence. (iii) The species have recently expanded to occupy their current distributions and an insufficient amount of time has passed for divergence to occur. Phylogenetic analysis of mitochondrial DNA (ND2 gene) variation (N = 216) in the white-breasted nuthatch reveals four reciprocally monophyletic clades concordant with the distribution of the regional North American pine and oak woodlands, and supports hypothesis 1 of in situ evolution of populations in the regional pine and oak communities. Within-clade population structure and demographic history are also discussed.     

Associations between malaria and MHC genes in a migratory songbird

Malaria parasites are a widespread and species-rich group infecting many wild populations of mammals, birds and reptiles. Studies on humans have demonstrated that genetic factors play a key role in the susceptibility and outcome of malaria infections. Until the present study, it has not been examined whether genetic variation in hosts is important for the outcome of malaria infections in natural avian populations. We investigated associations between major histocompatibility complex (MHC) genes and prevalence of three different avian malaria parasites (Haemoproteus payevskyi (GRW1), Plasmodium sp. (GRW2) and Plasmodium sp. (GRW4)) in a long-term study of great reed warblers Acrocephalus arundinaceus. We hypothesized that the MHC genes could either give full protection against a malaria infection, or confer protection against lethal malaria and direct the infection towards being milder. We found a positive association between numbers of MHC class I alleles (a measure of level of heterozygosity) and prevalence of the GRW2 parasite, suggesting the latter scenario. There was also a positive association between a specific MHC allele (B4b), previously shown to be under frequency-dependent selection in the study population, and prevalence of GRW2. These associations suggest that individuals carrying either a large number of MHC alleles or a specific MHC allele are protected against lethal malaria infections.     

Feeder use predicts both acquisition and transmission of a contagious pathogen in a North American songbird

Individual heterogeneity can influence the dynamics of infectious diseases in wildlife and humans alike. Thus, recent work has sought to identify behavioural characteristics that contribute disproportionately to individual variation in pathogen acquisition (super-receiving) or transmission (super-spreading). However, it remains unknown whether the same behaviours enhance both acquisition and transmission, a scenario likely to result in explosive epidemics. Here, we examined this possibility in an ecologically relevant host–pathogen system: house finches and their bacterial pathogen, Mycoplasma gallisepticum, which causes severe conjunctivitis. We examined behaviours likely to influence disease acquisition (feeder use, aggression, social network affiliations) in an observational field study, finding that the time an individual spends on bird feeders best predicted the risk of conjunctivitis. To test whether this behaviour also influences the likelihood of transmitting M. gallisepticum, we experimentally inoculated individuals based on feeding behaviour and tracked epidemics within captive flocks. As predicted, transmission was fastest when birds that spent the most time on feeders initiated the epidemic. Our results suggest that the same behaviour underlies both pathogen acquisition and transmission in this system and potentially others. Identifying individuals that exhibit such behaviours is critical for disease management.     

Genetic differentiation among populations of a migratory songbird: Limnothlypis swainsonii

Population structure and gene flow were inferred from isozyme variation at 26 loci among five populations of Limnothlypis swainsonii (Swainson's Warbler; Parulidae), a Nearctic-Neotropic migrant songbird breeding in the unglaciated southeastern U.S.A. These populations exhibit relatively high levels of heterozygosity ( =0.083), and 16 of 26 loci were polymorphic in at least one population ( =0.385). Allelic frequencies were significantly heterogeneous at five loci, indicating a surprising degree of population structure for a migratory bird with no recognized subspecies ( F _ST =0.043). Moderate levels of gene flow are inferred ( Nm =1.5 to 11.7), yet population structure does not fit an isolation-by-distance model. Genetic heterogeneity is mostly due to differentiation between an Arkansas population and four populations from the coastal plain (from Louisiana to Virginia). Genetic drift may be responsible for much of the observed structure, but the lack of obvious barriers to dispersal between Arkansas and the coastal plain suggests that differentiation has been maintained by some other mechanism(s). Vicariance events on the breeding range, a split wintering range, or both could contribute to the pattern of differentiation observed.