Genetic load and viability variation in korean natural populations ofDrosophila melanogaster

Summary Natural populations of Drosophila melanogaster from Anyang and Susac (suburbs of Seoul) have been analyzed with respect to viability variation on the second chromosome. Homozygotes as well as random heterozygotes for wild chromosomes were studied. The frequency of lethal factors was about 16 per cent, that of drastics 26 per cent. The average viability of homozygotes was 0.650 including lethal lines and 0.858 for quasinormals; that for random heterozygotes was 1.125. Allelism tests have been performed for the lethals. The allelism rate turned out to be as high as 0.036 and 0.0214, respectively. Using a formula by Nei, the effective population size can be estimated from these data. Korean D. melanogaster populations proved as small as 2000 to 3000 individuals. No correlation between homozygous and heterozygous viabilities could be found. According to these observations, along with the fact that partly big clusters of identic lethals could be found in the allelism tests, it is concluded that in Korean populations quite a large part of the hard genetic load is balanced. The connection between population size, population structure and associative or genuine overdominance is discussed.     

The genetic conditions in heterozygous and homozygous populations ofDrosophila I. The fate of alien chromosomes

In experimental populations ofDrosophila melanogaster lethal chromosomes with dominant markers and inversions were introduced and the frequency changes of the markers studied during a period of several generations. The base populations of the various experiments differed from each other with respect to their degree of heterozygosity. Monochromosomal populations were isogenic for a quasinormal + chromosome, dichromosomal populations contained the genetic material of two different + chromosomes, trichromosomal of three, tetrachromosomal of four, hexachromosomal of six and polychromosomal populations of many normal chromosomes. Marker chromosomes with the dominant genesLCy, Cy, Pm orD respectively were added to the populations with an initial frequency of 16,6 per cent. The fate of the dominant markers was different in different populations. In some the marker chromosome reached equilibrium frequencies, in others they were eliminated with variable speed. As a rule the lethal marker chromosomes were accepted by monochromosomal populations; however, they were eliminated from populations with a higher degree of heterozygosity. Since in all populations one genotype, namely the homozygote for the marker chromosome, was lethal, the adaptive values c of the +/LCy, +/Cy, +/Pm or +/D heterozygotes could easily be calculated from the experimental data. This c value can be used as a measure for the combining ability of the marker chromosomes. It could be shown that c depends on the degree of heterozygosity of a population or in other words that the average degree of heterozygosity of the marker free individuals determines the selection processes. An equation can be arrived at which fits the experimental results very well if superiority of heterozygous +/+ individuals over +/+ homozygotes is assumed. From that it was concluded that heterosis is the determining variable in our experiments. An attempt was undertaken in order to decide if in our case the observed heterosis was due to dominance or to overdominance. It was postulated that in di-, tri-, tetra- or hexachromosomal populations the adaptive values of the marker free normals should progressively increase if recessive detrimental genes are the cause of heterosis but not if heterozygosity on many loci leads to overdominance. The a values of the +/+ individuals were ealeulated from the frequency changes of the marker chromosomes for each subsequent two-generation period. Unfortunately only two different dichromosomal populations were available. These showed increasing adaptive values for the normals. The tri-, tetra-, and hexachromosomal populations, however, gave different results, some with increasing, some with fluctuating adaptive values. From that it was concluded that heterosis can be due in one case to dominance and in the other to overdominance. In either case, the recessive genetic load may be rather important as a determinating factor in the dynamics of populations.Dedicated to Prof. Th. Dobzhansky on the occasion of his seventieth birthday in deepest gratitude.     

Genetic Load and Viability Distribution in Central and Marginal Populations of DROSOPHILA SUBOBSCURA

Relative viabilities of individuals homozygous or randomly heterozygous for wild O chromosomes derived from a marginal (Norwegian) and a central (Greek) population of D. subobscura were obtained by means of a newly prepared marker strain. In the central and marginal populations 20.8 and 28.8 percent of all chromosomes proved lethal or semilethal in homozygous condition. Mean viability was higher for +/+ random heterozygotes than for +/+ homozygotes. This remained the case for the marginal, but not for the central populations, after exclusion of the detrimental chromosomes from the calculations. The variances of viabilities were higher for homozygotes than for heterozygotes, but the test crosses with chromosomes from the marginal population had generally higher variances than those with chromosomes from the central population. No correlation was found in either populations between the action of a chromosome in homozygous condition with its action in heterozygous condition. This is interpreted as complete recessiveness of genetic load. The results are discussed in terms of the observed reduction of the inversion polymorphism which is not paralleled by a reduction in enzyme and, as shown here, by reduction in viability variation. It is thought that the heterotic effect of inversions is due to their homeostatic action, which depends less on structural genes than on higher orders of organization due to gene interaction or regulation. Whatever the causes, it is very likely that marginal populations differ from central populations with respect to their genetic system.     

Heterozygous Effects on Fitness of Ems-Treated Chromosomes in DROSOPHILA MELANOGASTER

The heterozygous effects on fitness of second chromosomes carrying mutants induced with different doses of EMS were ascertained by monitoring changes in chromosome frequencies over time. These changes were observed in populations in which the treated chromosomes, as well as untreated competitors, remained heterozygous in males generation after generation. This situation was achieved by using a translocation which links the second chromosome to the X chromosome; however, only untranslocated second chromosomes were mutagenized. Chromosomes were classified according to their effects on viability in homozygous condition. A preliminary homozygosis identified completely lethal chromosomes; secondary tests distinguished between drastic (viability index < 0.1) and nondrastic chromosomes. Chromosomes that were nondrastic after treatment were found to reduce the fitness of their heterozygous carriers by 3-5%. The data show that flies homozygous for these chromosomes were about 2.7% less viable per treatment with 1 mm EMS than flies homozygous for untreated chromosomes. By comparing the fitness-depressing effects of nondrastic EMS-induced mutants in heterozygous condition with the corresponding viability-depressing effects measured by Temin, it is apparent that the total fitness effects are several times larger than the viability effects alone. Completely lethal chromosomes derived from the most heavily treated material reduced fitness by 11% in heterozygous condition; approximately half of this reduction was due to the lethal mutations themselves.     

Genetic load and viability studies in Korean natural populations of Drosophila melanogaster

Further studies about the amount of genetic load in the Korean Anyang and Cheju (Sughipo) Island populations of Drosophila melanogaster were performed. In total 1630 second chromosomes were extracted from the Anyang opulation between 1983 and 1985; 19.0 % of the chromosomes proved lethal, 8.8 % semilethal in homozygous condition. From the island oulation, 504 wild second chromosomes were analysed in 1986; 24.2 % were lethal, 4.6 % subleiaf A slight increase of lethal and semilethal frequencies between 1976 and 1986 can be observed. Mean viabilities of “all homozy-gotes”, “quasinormal-homozygotes”, and “random heterozygotes” were estimated from crossin experiments with marker strains. Random heterozygotes were always more viable than quasinormal homozygotes. An analysis for correlation between random heterozgous and homozygous viabilities gave values significantly different from zero only for the 1985 kyang sample (r =—0.4625, P < 0.01), but no significances could be observed for all other Anyang samples from 1983, 1984, and 1986, respectively. he effective population sizes were estimated to be between 2000 and 6300 individuals for the Anyan and 4200 individuals for the island population, using Nel's formula (1968). It is sugested that baknced natural selection is mainly responsible for the maintenance of genetic load in the Anyang natural populations of D. melanogaster.     

Heterozygous effects on viability of Drosophila supergenes that are lethal when homozygous

Eight fourth chromosomes which were homozygous lethal and 170 which were homozygous nonlethal were extracted from the same Drosophila melanogaster cage. The lethals were complementary, i.e., they were viable in all 28 nonreflexive pairwise combinations. Three different lethals produced sterile homozygotes; these are called leaky lethals. Different lethal heterozygotes' viabilities were compared by means of paired-t tests. The difference in mean relative viabilities between a pair of genotypes containing different lethals but exactly the same nonlethal was treated as one observation. The mean difference for any pair of lethals was based on only part of the full array of nonlethals. Of 17 possible paired comparisons, nine were statistically significant. In eight out of ten possible pairs and in six out of seven significant pairs, the heterozygous viability of leaky lethals was less than that of absolute (nonleaky) lethals. There was no association between stage of homozygous lethal action and heterozygous viability effect. In general, different lethals had different heterozygous effects on viability. The results are summarized in Table 5. In memoriam David Walter Kenyon (1939–1972)Research supported by The National Science Foundation of the United States (GB-3759).     

Frequency of chromosome polymorphism for pericentric inversions and B-chromosomes in Spanish populations of Rattus rattus frugivorus

Inversion frequencies in chromosomes 16 and 18 and B-chromosome frequency have been studied in three populations of Rattus rattus frugivorus.In two of these, Cuenca and San Pedro del Pinatar, the frequencies of homozygous and heterozygous individuals do not differ significantly from the Hardy-Weinberg equilibrium for both chromosome pairs. By contrast, in the Vega de Granada population there are fewer heterozygous and more homozygous individuals than expected on the basis of the Hardy-Weinberg distribution, although the frequency distributions of karyotypes in these three populations are not significantly different.In relation to the B chromosome, the Cuenca and San Pedro populations have frequencies of B-carrying animals of 0.25 and 0.22 respectively, the Vega de Granada population of 0.80.     

Mutation Rate and Dominance of Genes Affecting Viability in DROSOPHILA MELANOGASTER

Spontaneous mutations were allowed to accumulate in a second chromosome that was transmitted only through heterozygous males for 40 generations. At 10-generation intervals the chromosomes were assayed for homozygous effects of the accumulated mutants. From the regression of homozygous viability on the number of generations of mutant accumulation and from the increase in genetic variance between replicate chromosomes it is possible to estimate the mutation rate and average effect of the individual mutants. Lethal mutations arose at a rate of 0.0060 per chromosome per generation. The mutants having small effects on viability are estimated to arise with a frequency at least 10 times as high as lethals, more likely 20 times as high, and possibly many more times as high if there is a large class of very nearly neutral mutations.-The dominance of such mutants was measured for chromosomes extracted from a natural population. This was determined from the regression of heterozygous viability on that of the sum of the two constituent homozygotes. The average dominance for minor viability genes in an equilibrium population was estimated to be 0.21. This is lower than the value for new mutants, as expected since those with the greatest heterozygous effect are most quickly eliminated from the population. That these mutants have a disproportionately large heterozygous effect on total fitness (as well as on the viability component thereof) is shown by the low ratio of the genetic load in equilibrium homozygotes to that of new mutant homozygotes.     

Genetic Load in Natural Populations: Is It Compatible with the Hypothesis That Many Polymorphisms Are Maintained by Natural Selection?

Recent studies of genetically controlled enzyme variation lead to an estimation that at least 30 to 60% of the structural genes are polymorphic in natural populations of many vertebrate and invertebrate species. Some authors have argued that a substantial proportion of these polymorphisms cannot be maintained by natural selection because this would result in an unbearable genetic load. If many polymorphisms are maintained by heterotic natural selection, individuals with much greater than average proportion of homozygous loci should have very low fitness. We have measured in Drosophila melanogaster the fitness of flies homozygous for a complete chromosome relative to normal wild flies. A total of 37 chromosomes from a natural population have been tested using 92 experimental populations. The mean fitness of homozygous flies is 0.12 for second chromosomes, and 0.13 for third chromosomes. These estimates are compatible with the hypothesis that many (more than one thousand) loci are maintained by heterotic selection in natural populations of D. melanogaster.     

Accumulation of Deleterious Genes in a Cage Population of DROSOPHILA MELANOGASTER

Lethal and sterility mutations were accumulated in a cage population which was initiated with lethal- and sterility-free second chromosomes of D. melanogaster. It took about 2,000 days for the frequencies of these genes to reach equilibrium levels, i.e., 18% lethal and 9% male-sterile chromosomes. Two other cage populations which were initiated with random chromosomes sampled from natural populations and kept for more than eleven years in the laboratory showed 19-20% lethal content. The elimination rates of lethals by homozygosis in these populations were smaller than the mutation rate. By using NEI's formulae, the deleterious effect of a lethal gene in heterozygous condition (h) was estimated to be 0.035. The effective population number in the cage populations was estimated to be 1,000-2,900, while the actual population number was 3,500-7,800.     

Darwinian fitness and adaptedness in experimental populations of Drosophila willistoni

Fifteen second chromosomes were extracted from Drosophila willistoni flies collected in four natural populations. The adaptedness of populations homozygous for each chromosome was measured by average population size and productivity. Six control populations were established with mixtures of the wild second chromosomes. The Darwinian fitness of flies homozygous for each wild second ehromosome, and of flies carrying random combinations of these chromosomes, was measured relative to the fitness of flies heterozygous for a wild and a marker chromosome. The Darwinian fitness of homozygotes for each second chromosome relative to the fitness of flies carrying random combinations of the natural chromosomes was then inferred. The estimated loss of fitness on making the natural second chromosomes homozygous was substantial, ranging from 39 to 83 pereent, with an average reduction in fitness of 66 percent. These results with D. willistoni are consistent with those from similar experiments with other drosophila species, and they are compatible with a significant role for heterosis in the maintenance of genetic variability.Populations homozygous for wild chromosomes differ in their adaptedness to the experimental environment. Population size and productivity are correlated, although the correlation is far from complete. Some populations have high productivity and low population size, or vice versa. The control populations, with greater genetic variability, were superior in adaptedness to the average of the single-chromosome populations. The Darwinian fitness and the adaptedness of the genotypes in this experiment were not significantly correlated. It follows that certain measures used by population geneticists, such as genetic load and average Darwinian fitness, cannot be taken as general indices of how well adapted a population is to its environment.This work was supported by U.S. Public Health Service Grant RO1-HDO5055, NSF grant GB-20694 (International Biological Program). AEC contract AT-(30-1) 3096, and PHS Career Development Award K3 GM 37265. The collection of the flies was supported by the Fundacão de Amparo a Pesquisa do Estado de São Paulo, Brazil. The senior author's stay in New York, where the experiments were conducted, was financed in part by Research Fellowship 2-12861 from the Panamerican Union.     

Heterosis without selectional coadaptation inDrosophila ananassae

Summary The relative viabilities of homozygous and heterozygous karyotypes were measured by making crosses between strains ofD. ananassae homozygous for ST or inverted gene orders in the second and third chromosomes. The strains utilized during the present study originated from widely separated localities in India, Kuala Lumpur and Kota Kinabaru, Malaysia and Chian Mai, Thailand. The presence of heterosis in many interpopulation crosses is evident from the results which show that the inversion heterozygotes formed by chromosomes coming from distant populations exhibit heterosis. On the other hand, heterosis is absent in two intrapopulation crosses. Thus the present results provide evidence that heterozygosis for many genes and gene complexes does produce high fitness without previous selectional coadaptation.     

Interracial hybridization in Drosophila ananassae

Crosses were made between strains of Drosophila ananassae, homozygous for the ST or AL gene sequences in the second chromosome, and originating from geographically distant localities in India. All interracial crosses were maintained separately in culture bottles for ten generations. After ten generations it was observed that the inversion heterozygotes were heterotic. Thus it was found that interracial hybridization does not lead to breakdown of heterosis. Therefore, it has been suggested that localised coadaptation is absent in the natural populations of Indian D. ananassae. Thus D. ananassae does not show the pattern of some other species.     

Fitness Effects of Ems-Induced Mutations on the X Chromosome of DROSOPHILA MELANOGASTER. I. Viability Effects and Heterozygous Fitness Effects

Drosophila melanogaster X chromosomes were mutagenized by feeding males sucrose solutions containing ethyl methanesulfonate (EMS); the concentrations of EMS in the food were 2.5 mM, 5.0 mM, and 10.0 mM. Chromosomes were exposed to the mutagen up to three times by treating males in succeeding generations. After treatment, the effective exposures were 2.5, 5.0, 7.5, 10.0, 15.0, and 30.0 mM EMS. X chromosomes treated in this manner were tested for effects on fitness in both hemizygous and heterozygous conditions, and for effects on viability in hemizygous and homozygous conditions. In addition, untreated X chromosomes were available for study. The viability and heterozygous fitness effects are presented in this paper, and the hemizygous fitness effects are discussed in the accompanying one (MITCHELL and SIMMONS 1977). Hemizygous and homozygous viability effects were measured by segregation tests in vial cultures. For hemizygous males, viability was reduced 0.5 percent per mM EMS treatment; for homozygous females, it was reduced 0.7% per mM treatment. The decline in viability appeared to be a linear function of EMS dose. The viabilities of males and females were strongly correlated. Heterozygous fitness effects were measured by monitoring changes in the frequencies of treated and untreated X chromosomes in discrete generation populations which, through the use of an X-Y translocation, maintained them only in heterozygous condition. Flies that were heterozygous for a treated chromosome were found to be 0.4% less fit per mM EMS than flies heterozygous for an untreated one.     

Isolation of homozygous mutant mouse embryonic stem cells using a dual selection system

Obtaining random homozygous mutants in mammalian cells for forward genetic studies has always been problematic due to the diploid genome. With one mutation per cell, only one allele of an autosomal gene can be disrupted, and the resulting heterozygous mutant is unlikely to display a phenotype. In cells with a genetic background deficient for the Bloom's syndrome helicase, such heterozygous mutants segregate homozygous daughter cells at a low frequency due to an elevated rate of crossover following mitotic recombination between homologous chromosomes. We constructed DNA vectors that are selectable based on their copy number and used these to isolate these rare homozygous mutant cells independent of their phenotype. We use the piggyBac transposon to limit the initial mutagenesis to one copy per cell, and select for cells that have increased the transposon copy number to two or more. This yields homozygous mutants with two allelic mutations, but also cells that have duplicated the mutant chromosome and become aneuploid during culture. On average, 26% of the copy number gain events occur by the mitotic recombination pathway. We obtained homozygous cells from 40% of the heterozygous mutants tested. This method can provide homozygous mammalian loss-of-function mutants for forward genetic applications.     

Spontaneous and Ethyl Methanesulfonate-Induced Mutations Controlling Viability in DROSOPHILA MELANOGASTER. II. Homozygous Effect of Polygenic Mutations

Polygenic mutations affecting viability were accumulated on the second chromosome of Drosophila melanogaster by treating flies with EMS in successive generations. The treated chromosomes were later made homozygous and tested for their effects on viability by comparison of the frequency of such homozygotes with that of other genotypes in the same culture. The treated wild-type chromosomes were kept heterozygous in Pm/+ males by mating individual males in successive generations to Cy/Pm females. The number of generations of accumulation was 1 to 30 generations, depending on the concentration of EMS. A similar experiment for spontaneous polygenic mutations was also conducted by accumulating mutations for 40 generations. The lower limit of the spontaneous mutation rate of viability polygenes is estimated to be 0.06 per second chromosome per generation, which is about 12 times as high as the spontaneous recessive lethal mutation rate, 0.005. EMS-induced polygenic mutations increase linearly with the number of treated generations and with the concentration of EMS. The minimum mutation rate of viability polygenes is about 0.017 per 10(-4)m, which is only slightly larger than the lethal rate of 0.013 per 10(-4) m. The maximum estimate of the viability reduction of a single mutant is about 6 to 10 percent of the normal viability. The data are consistent with a constant average effect per mutant at all concentrations, but this is about three times as high as that for spontaneous mutants. It is obvious that one can obtain only a lower limit for the mutation rate, since some mutants may have effects so near to zero that they cannot be detected. The possibility of measuring something other than the lower limit is discussed. The ratio of the load due to detrimental mutants to that caused by lethals, the D/L ratio, is about 0.2 to 0.3 for EMS-induced mutants, as compared to about 0.5 for spontaneous mutants. This is to be expected if EMS treatment produces a large fraction of small deletions and other chromosome rearrangements which are more likely to be lethal.     

Towards an understanding of the nature and fitness of induced mutations in germ cells of mice: homozygous viability and heterozygous fitness effects of induced specific-locus, dominant cataract and enzyme-activity mutations

A total of 219 specific-locus, 35 dominant cataract and 44 enzyme-activity mutations induced in spermatogonia of mice by radiation or ethylnitrosourea (ENU) treatment were characterized for homozygous viability as well as fitness effects on heterozygous carriers. For all 3 genetic endpoints, the frequency of homozygous lethal mutations was higher in the group of radiation-induced mutations than in the ENU-treatment group. These observations are consistent with the hypothesis that radiation-induced mutations recovered in the mouse are mainly due to small deletions while ENU induces mainly intragenic mutations. The overall fitness of mutant heterozygotes was reduced for the group of radiation-induced specific-locus, dominant cataract and enzyme-activity mutations while the ENU-induced mutations exhibited no reduction in fitness. The fitness reduction of heterozygous carriers for a newly occurring mutation in a population is important in determining the persistence of the mutation in a population, and thus the total number of individuals affected before a mutation is eventually eliminated from the population. For the present results a maximal persistence of 12 generations and a minimal persistence of 3 generations is estimated. These results are consistent with the 6-7-generation persistence time assumed by UNSCEAR (1982) in an estimate of the overall effects of radiation-induced mutations in man.     

Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster

The rates of movement of 11 families of transposable elements of Drosophila melanogaster were studied by means of in situ hybridization of probes to polytene chromosomes of larvae from a long-term mutation accumulation experiment. Replicate mutation-accumulation lines carrying second chromosomes derived from a single common ancestral chromosome were maintained by backcrosses of single males heterozygous for a balancer chromosome and a wild-type chromosome, and were scored after 116 generations. Twenty-seven transpositions and 1 excision were detected using homozygous viable and fertile second chromosomes, for a total of 235,056 potential sources of transposition events and a potential 252,880 excision events. The overall transposition rate per element per generation was 1.15 x 10(-4) and the excision rate was 3.95 x 10(-6). The single excision (of a roo element) was due to recombination between the element's long terminal repeats. A survey of the five most active elements among nine homozygous lethal lines revealed no significant difference in the estimates of transposition and excision rates from those from viable lines. The excess of transposition over excision events is in agreement with the results of other in situ hybridization experiments, and supports the conclusion that replicative increase in transposable element copy number is opposed by selection. These conclusions are compared with those from other studies, and with the conclusions from population surveys of element frequencies.     

Homozygosity and Heterozygosity in three Populations of Rivulus marmoratus

Rivulus marmoratus is a self-fertilizing hermaphroditic fish found in the tropical Atlantic as populations of homozygous clones, with the exception of a single site in Belize where male fish are abundant and heterozygosity is the norm. The presence of male fish apparently leads to outcrossing and heterozygosity, but males have been found in limited numbers in other populations which are homozygous. DNA fingerprinting now reveals that the Belize population has remained heterozygous, with a high proportion of males (20–25%), for several years. In addition, two newly discovered populations with a lower percentage of males (1–2%) are reported from the Bahamas and Honduras. One of these populations (Bahamas) consists of homozygous clones, while the other (Honduras) displays a limited proportion of heterozygosity. The Honduras population is only the second outcrossing population known in this species, and the limited heterozygosity seen here may reflect the lower proportion of males.     

Genetical variation for enzyme activity in a population of Drosophila melanogaster. IV. Analysis of alcohol dehydrogenase activity in chromosome substitution lines.

Chromosome substitution lines derived from two inbred strains of Drosophila melanogaster homozygous for the AdhS allele of alcohol dehydrogenase but differing significantly in ADH activity have been analysed. Variation in activity can be attributed to all three major chromosomes. The effect of the second chromosome, where the ADH structural gene is located, can be modified significantly by the genotype of both the first and the third chromosomes. The most substantial single effect results from homozygous differences between the third chromosomes. In contrast, differences between the X chromosomes are revealed only when the second or second and third chromosomes are heterozygous.