Nitrogen fixation and diversity of benthic cyanobacterial mats on coral reefs in Curaçao

Coral Reefs - Benthic cyanobacterial mats (BCMs) have increased in abundance on coral reefs worldwide. However, their species diversity and role in nitrogen fixation are poorly understood. We...     

Nitrogen fixation in moulds and yeasts—a reappraisal

Summary The ability to fix nitrogen of 10 strains of the yeasts Rhodotorula, Bullera and Torulopsis and 4 strains of Pullularia, all isolated from soils and some supplied by other investigators was examined using both the heavy nitrogen (¹⁵N₂) and acetylene reduction techniques. Rigorous standards for aseptic culture, freedom from combined nitrogen and precision of analysis were maintained. No fixation was observed in any of the organisms and the ability of any eucaryote cell to fix nitrogen is doubted. Suggestions for the previous reports of fixation are made.     

Bryophyte-cyanobacteria symbioses and their nitrogen fixation capacity—A review

苔藓-蓝藻共生体(BCS)能固氮, 是养分贫瘠地区森林氮输入的不可忽视的来源。BCS关系与固氮能力研究为科学认识生态系统氮输入与氮循环过程和机理提供了新的视角和有效途径, 具有重要的理论价值。然而, BCS关系、固氮作用与机理的研究迄今未受到足够关注, 报道较少, 认识仍然是零星而片段化的。基于系统查阅的相关文献, 该文综述了BCS的种类组成与共生关系类型、固氮能力及所固定氮的去向及其影响因素和作用机理, 指出了存在的问题及需要深入关注和亟待突破的4个研究方向。     

Conservative ecological and evolutionary patterns in liverwort–fungal symbioses

Liverworts, the most ancient group of land plants, form a range of intimate associations with fungi that may be analogous to the mycorrhizas of vascular plants. Most thalloid liverworts contain arbuscular mycorrhizal glomeromycete fungi similar to most vascular plants. In contrast, a range of leafy liverwort genera and one simple thalloid liverwort family (the Aneuraceae) have switched to basidiomycete fungi. These liverwort switches away from glomeromycete fungi may be expected to parallel switches undergone by vascular plants that target diverse lineages of basidiomycete fungi to form ectomycorrhizas. To test this hypothesis, we used a cultivation-independent approach to examine the basidiomycete fungi associated with liverworts in varied worldwide locations by generating fungal DNA sequence data from over 200 field collections of over 30 species. Here we show that eight leafy liverwort genera predominantly and consistently associate with members of the Sebacina vermifera species complex and that Aneuraceae thalloid liverworts associate nearly exclusively with Tulasnella species. Furthermore, within sites where multiple liverwort species co-occur, they almost never share the same fungi. Our analyses reveal a strikingly conservative ecological and evolutionary pattern of liverwort symbioses with basidiomycete fungi that is unlike that of vascular plant mycorrhizas.     

Nitrogen fixation in eukaryotes – New models for symbiosis

Background  

Nitrogen, a component of many bio-molecules, is essential for growth and development of all organisms. Most nitrogen exists in the atmosphere, and utilisation of this source is important as a means of avoiding nitrogen starvation. However, the ability to fix atmospheric nitrogen via the nitrogenase enzyme complex is restricted to some bacteria. Eukaryotic organisms are only able to obtain fixed nitrogen through their symbiotic interactions with nitrogen-fixing prokaryotes. These symbioses involve a variety of host organisms, including animals, plants, fungi and protists.     

Nitrogen fixation and poly-β-hydroxybutyric acid content in bacteroids ofRhizobium lupini andRhizobium leguminosarum

Summary Experiments carried out in a sand culture have demonstrated that during the growth ofVicia faba andLupinus luteus inoculated with effective strains of Rhizobium, and when the behaviour of bacteroids isolated from nodules ofLupinus luteus, Pisum sativum andVicia faba which had been inoculated with effective and ineffective strains and when comparisons were made between bacteriods isolated from effective nodules ofVicia faba andLupinus luteus either at midday or at midnight there is a reverse correlation between the intensity of nitrogen fixation and respiration, on the one hand, and the content of poly--hydroxybutyric acid (PHB), on the other. This evidence suggests an important role played by PHB in the supply of symbiotic fixation with energy and carbon substrates.Glucose and -hydroxybutyrate were the best substrates for PHB synthesis in the suspension of bacteroids of an effective strain ofR. lupini at all stages of plant growth. At the stage of active nitrogen fixation (flowering) PHB was actively synthesized in the presence of succinate. In the absence of exogenous substrates the polymer degraded, the process being enhanced in the presence of ammonium ions. When ammonium was added together with glucose, PHB synthesis did not occur and at the flowering stage the polymer broke down particularly rapidly. re]19760505     

Molybdenum isotope fractionation by cyanobacterial assimilation during nitrate utilization and N₂ fixation

We measured the δ⁹⁸Mo of cells and media from molybdenum (Mo) assimilation experiments with the freshwater cyanobacterium Anabaena variabilis, grown with nitrate as a nitrogen (N) source or fixing atmospheric N₂. This organism uses a Mo‐based nitrate reductase during nitrate utilization and a Mo‐based dinitrogenase during N₂ fixation under culture conditions here. We also demonstrate that it has a high‐affinity Mo uptake system (ModABC) similar to other cyanobacteria, including marine N₂‐fixing strains. Anabaena variabilis preferentially assimilated light isotopes of Mo in all experiments, resulting in fractionations of ?0.2‰ to ?1.0‰ ± 0.2‰ between cells and media (ε_{cells–media}), extending the range of biological Mo fractionations previously reported. The fractionations were internally consistent within experiments, but varied with the N source utilized and for different growth phases sampled. During growth on nitrate, A. variabilis consistently produced fractionations of ?0.3 ± 0.1‰ (mean ± standard deviation between experiments). When fixing N₂, A. variabilis produced fractionations of ?0.9 ± 0.1‰ during exponential growth, and ?0.5 ± 0.1‰ during stationary phase. This pattern is inconsistent with a simple kinetic isotope effect associated with Mo transport, because Mo is likely transported through the ModABC uptake system under all conditions studied. We present a reaction network model for Mo isotope fractionation that demonstrates how Mo transport and storage, coordination changes during enzymatic incorporation, and the distribution of Mo inside the cell could all contribute to the total biological fractionations. Additionally, we discuss the potential importance of biologically incorporated Mo to organic matter‐bound Mo in marine sediments.     

Mechanisms in plant growth-promoting rhizobacteria that enhance legume–rhizobial symbioses

Nitrogen fixation is an important biological process in terrestrial ecosystems and for global crop production. Legume nodulation and N₂ fixation have been improved using nodule-enhancing rhizobacteria (NER) under both regular and stressed conditions. The positive effect of NER on legume–rhizobia symbiosis can be facilitated by plant growth-promoting (PGP) mechanisms, some of which remain to be identified. NER that produce aminocyclopropane-1-carboxylic acid deaminase and indole acetic acid enhance the legume–rhizobia symbiosis through (i) enhancing the nodule induction, (ii) improving the competitiveness of rhizobia for nodulation, (iii) prolonging functional nodules by suppressing nodule senescence and (iv) upregulating genes associated with legume–rhizobia symbiosis. The means by which these processes enhance the legume–rhizobia symbiosis is the focus of this review. A better understanding of the mechanisms by which PGP rhizobacteria operate, and how they can be altered, will provide opportunities to enhance legume–rhizobial interactions, to provide new advances in plant growth promotion and N₂ fixation.     

Nitrogen–climate interactions in US agriculture

Agriculture in the United States (US) cycles large quantities of nitrogen (N) to produce food, fuel, and fiber and is a major source of excess reactive nitrogen (Nr) in the environment. Nitrogen lost from cropping systems and animal operations moves to waterways, groundwater, and the atmosphere. Changes in climate and climate variability may further affect the ability of agricultural systems to conserve N. The N that escapes affects climate directly through the emissions of nitrous oxide (N₂O), and indirectly through the loss of nitrate (NO₃ ^?), nitrogen oxides (NO _x ) and ammonia to downstream and downwind ecosystems that then emit some of the N received as N₂O and NO _x . Emissions of NO _x lead to the formation of tropospheric ozone, a greenhouse gas that can also harm crops directly. There are many opportunities to mitigate the impact of agricultural N on climate and the impact of climate on agricultural N. Some are available today; many need further research; and all await effective incentives to become adopted. Research needs can be grouped into four major categories: (1) an improved understanding of agricultural N cycle responses to changing climate; (2) a systems-level understanding of important crop and animal systems sufficient to identify key interactions and feedbacks; (3) the further development and testing of quantitative models capable of predicting N-climate interactions with confidence across a wide variety of crop-soil-climate combinations; and (4) socioecological research to better understand the incentives necessary to achieve meaningful deployment of realistic solutions.     

Strigolactones: Internal and external signals in plant symbioses?

As the newest plant hormone, strigolactone research is undergoing an exciting expansion. In less than five years, roles for strigolactones have been defined in shoot branching, secondary growth, root growth and nodulation, to add to the growing understanding of their role in arbuscular mycorrhizae and parasitic weed interactions.¹ Strigolactones are particularly fascinating as signaling molecules as they can act both inside the plant as an endogenous hormone and in the soil as a rhizosphere signal.^2-4 Our recent research has highlighted such a dual role for strigolactones, potentially acting as both an endogenous and exogenous signal for arbuscular mycorrhizal development.⁵ There is also significant interest in examining strigolactones as putative regulators of responses to environmental stimuli, especially the response to nutrient availability, given the strong regulation of strigolactone production by nitrate and phosphate observed in many species.^5,6 In particular, the potential for strigolactones to mediate the ecologically important response of mycorrhizal colonization to phosphate has been widely discussed. However, using a mutant approach we found that strigolactones are not essential for phosphate regulation of mycorrhizal colonization or nodulation.⁵ This is consistent with the relatively mild impairment of phosphate control of seedling root growth observed in Arabidopsis strigolactone mutants.⁷ This contrasts with the major role for strigolactones in phosphate control of shoot branching of rice and Arabidopsis^8,9 and indicates that the integration of strigolactones into our understanding of nutrient response will be complex. New data presented here, along with the recent discovery of phosphate specific CLE peptides,¹⁰ indicates a potential role for PsNARK, a component of the autoregulation of nodulation pathway, in phosphate control of nodulation.     

Dynamics of Inorganic Nitrogen in Nitrate and Glucose-amended Alkaline–saline Soil

Induction of assimilatory NO ₃ ⁻ reduction through the application of an easily decomposable substrate in alkaline–saline soils of the former lake Texcoco (Mexico) resulted in a fast immobilization of NO ₃ ⁻ in excess of N required for metabolic activity and the release of large concentrations of NO ₂ ⁻ and smaller amounts of NH ₄ ⁺ . We postulated that this was regulated by the amounts of NO ₃ ⁻ and glucose added, and affected by the specific characteristics of soil from the former lake Texcoco. This was investigated by spiking soils of different electrolytic conductivity (EC) 56.0 dS m⁻¹ (soil A of Texcoco) and 11.6 dS m⁻¹ (soil B of Texcoco) with different concentrations of NO ₃ ⁻ and glucose while dynamics of CO₂, NH ₄ ⁺ , NO ₂ ⁻ and NO ₃ ⁻ were monitored in an aerobic incubation for 7 days. For comparison reasons (control) an agricultural soil with low EC (0.3 dS m⁻¹) was included as well. In the agricultural soil, 67% of the added glucose mineralized within 7 days, but only 15% in soil A of Texcoco and 20% in soil B of Texcoco. The application of NO ₃ ⁻ to the agricultural soil added with glucose increased cumulative production of CO₂ 1.2 times, 1.5 times in soil A of Texcoco and 1.8 times in soil B of Texcoco. Concentration of NO ₂ ⁻ increased to > 100 mg NO ₂ ⁻ -N kg⁻¹ when 1000 mg glucose-C kg⁻¹ and 500 mg NO ₃ ⁻ -N kg⁻¹ were added to soil A and B of Texcoco, but remained < 3 mg NO ₂ ⁻ -N kg⁻¹ in the agricultural soil. The ratio between the cumulative production of CO₂ and the decrease in concentration of NO ₃ ⁻ was approximately one in soil A and B of Texcoco, but 10 in the agricultural soil after 3 days. It was found that micro-organisms in the alkaline–saline soil of the former lake Texcoco were capable of immobilizing large quantities of NO ₃ ⁻ when an easy decomposable substrate was available in excess of what might be required for metabolic activity while producing large concentrations of NO ₂ ⁻ , but these phenomena were absent in an agricultural soil. In soil of Texcoco, concentrations of NO ₂ ⁻ and NH ₄ ⁺ increased with increased salinity and availability of NO ₃ ⁻ . This ability to remove large quantities of NO ₃ ⁻ under these conditions and then utilize it at a later time might benefit micro-organisms of the N limited alkaline–saline soils of Texcoco.     

MALDI-MS and NanoSIMS imaging techniques to study cnidarian–dinoflagellate symbioses

Cnidarian–dinoflagellate photosynthetic symbioses are fundamental to biologically diverse and productive coral reef ecosystems. The hallmark of this symbiotic relationship is the ability of dinoflagellate symbionts to supply their cnidarian host with a wide range of nutrients. Many aspects of this association nevertheless remain poorly characterized, including the exact identity of the transferred metabolic compounds, the mechanisms that control their exchange across the host–symbiont interface, and the precise subcellular fate of the translocated materials in cnidarian tissues. This lack of knowledge is mainly attributed to difficulties in investigating such metabolic interactions both in situ, i.e. on intact symbiotic associations, and at high spatial resolution. To address these issues, we illustrate the application of two in situ and high spatial resolution molecular and ion imaging techniques–matrix-assisted laser desorption ionization mass spectrometry imaging (MALDI-MSI) and the nano-scale secondary-ion mass spectrometry (NanoSIMS) ion microprobe. These imaging techniques provide important new opportunities for the detailed investigation of many aspects of cnidarian–dinoflagellate associations, including the dynamics of cellular interactions.     

Triplet–triplet energy transfer in fucoxanthin-chlorophyll protein from diatom Cyclotella meneghiniana: Insights into the structure of the complex

Although the major light harvesting complexes of diatoms, called FCPs (fucoxanthin chlorophyll a/c binding proteins), are related to the cab proteins of higher plants, the structures of these light harvesting protein complexes are much less characterized. Here, a structural/functional model for the “core” of FCP, based on the sequence homology with LHCII, in which two fucoxanthins replace the central luteins and act as quenchers of the Chl a triplet states, is proposed. Combining the information obtained by time-resolved EPR spectroscopy on the triplet states populated under illumination, with quantum mechanical calculations, we discuss the chlorophyll triplet quenching in terms of the geometry of the chlorophyll–carotenoid pairs participating to the process. The results show that local structural rearrangements occur in FCP, with respect to LHCII, in the photoprotective site.     

Trace metal transfer in a soil–plant–snail microcosm field experiment and biomarker responses in snails

A microcosm experiment was performed to investigate temporal (up to 16 weeks) and spatial variation in metal transfer in a soil–food (nettle)–snail (Cepaea nemoralis) food chain and biomarker responses in the digestive gland of the same snails. Adult snails were sampled from an uncontaminated site and transferred to five sites located 0.5, 2.5, 3, 5, and 10 km from a historically polluted point source. All sites were park areas where grasslands interfered with patches of deciduous forest. Soil physicochemical properties (pH, clay%, OC%) significantly explained the uptake of metals by nettle. Concentrations of metals in the digestive gland (DG) of snails were significantly related to those in nettle, but rarely to soil physicochemical properties. In general metal concentrations in the DG fluctuated while As, Ni, Pb and Zn showed a site dependent increase with time. Despite the long term exposure, biomarker concentrations (lipid, glycogen, proteins, glutathione-S-transferases), and shell morphology, were not related to DG metal concentrations. Our investigation emphasizes the need for controlled long-term studies on the transfer and effects of metals in food chains since short term studies might only show temporary physiological changes due to experimental acclimation.     

Carbon–Nitrogen Interaction Modulates Plant Growth and Expression of Metabolic Genes in Rice

Carbon (C) and nitrogen (N) interact to coordinate their metabolism in achieving C:N homeostasis in all cellular organisms. Plant shoots and roots take up C and N, respectively, and the coordinated C and N assimilation is essential for normal plant growth and development. In this study, rice was used as a model system for the investigation of molecular mechanisms underlying C–N interactions and coordination in cereal species. We investigated the growth response of rice seedlings to a wide range of exogenous C:N availabilities and established balanced exogenous C:N that was optimal for rice seedling growth. To assess correlations between the modulation of plant growth and the regulation of metabolic gene expression by C:N availabilities, we examined the expression of PEPC, PK, NR, GS, and GOGAT in rice seedlings treated with four C:N availabilities: low C/low N, low C/high N, high C/low N, and high C/high N. It was found that their expression was subjected to complex regulation by C:N availabilities. Our results demonstrate that growth of shoot and root rice seedlings is regulated by C–N interaction and growth modulations are associated with changes in metabolic gene expression. Our findings suggest that rice is a useful model system for the investigation of regulation mechanisms responsible for C–N interaction and coordination in plants.     

Fungal endophyte–grass symbioses are rare in the California floristic province and other regions with Mediterranean-influenced climates

Research on agronomic grasses has shown that Class 1 fungal endophytes (Neotyphodium/Epichloë; Clavicipitaceae) can have profound effects on host plant fitness. However, in natural systems, even basic ecological knowledge of most endophyte symbioses is lacking. Here, I describe the distribution and abundance of endophytes across 36 native (or naturalized) grasses in a previously unsurveyed region, the California Floristic Province. Symbiosis was generally low: 8.33 % of species and 18.75 % of genera hosted endophytes. I then compared the proportions of symbiotic species and genera found in California and other Mediterranean regions to the proportions found in non-Mediterranean regions. Surveys of Mediterranean-influenced regions showed significantly lower proportions of species (～66 % lower) and genera (～65 % lower) hosting endophyte than surveys of non-Mediterranean regions. This pattern suggests that selection in Mediterranean climates may not favor endophyte symbioses.