Bacterial metabolism in the River Danube: parameters influencing bacterial production

1. Microbial parameters were determined at five sampling sites in the River Danube up-and downstream of Vienna, Austria, twice monthly over an annual cycle. Bacterial production (BP) was estimated from thymidine and leucine incorporations; additionally, the effect of turbulence on BP and the conversion factors for converting incorporation rates into bacterial cell production were determined using the cumulative approach. 2. BP under turbulent conditions was not significantly different from that under stagnant conditions. For thymidine, a mean annual conversion factor of 3.2 ± 10¹⁸ cells mol^?1 thymidine incorporated was calculated. For leucine, the corresponding factor was 0.07 ± 10¹⁸ cells mol^?1 leucine. Average annual BP calculated by thymidine incorporation was significantly higher than BP calculated from leucine incorporation and ranged from 47.2 to 77.5 μg C 1-^?1 day^?1 depending on the tracer and the conversion factor used. 3. Bacterial growth rates ranged from 0.1 day^?1 during winter to 1.7 day^?1 in the summer. A strong correlation was found between temperature as well as chlorophyll a and bacterial growth when temperature was greater than 5 °C; a major spring phytoplankton bloom at a temperature below 5 °C did not increase BP. 4. Dissolved organic carbon (DOC) concentrations varied between 2 and 7.2 mg C 1-^?1 and comprised between 50 and 92% of the total organic carbon pool in the River Danube, Based on the DOC concentration and an assumed bacterial growth yield of 20% we calculated mean DOC turnover times of around 60 days in the winter and less than 8 days during the summer.     

Longitudinal changes in the bacterial community composition of the Danube River: a whole-river approach

The Danube River is the second longest river in Europe, and its bacterial community composition has never been studied before over its entire length. In this study, bacterial community composition was determined by denaturing gradient gel electrophoresis (DGGE) analysis of PCR-amplified portions of the bacterial 16S rRNA gene from a total of 98 stations on the Danube River (73 stations) and its major tributaries (25 stations), covering a distance of 2,581 km. Shifts in the bacterial community composition were related to changes in environmental conditions found by comparison with physicochemical parameters (e.g., temperature and concentration of nutrients) and the concentration of chlorophyll a (Chl a). In total, 43 distinct DGGE bands were detected. Sequencing of selected bands revealed that the phylotypes were associated with typical freshwater bacteria. Apparent bacterial richness in the Danube varied between 18 and 32 bands and correlated positively with the concentration of P-PO(4) (r = 0.56) and negatively with Chl a (r = -0.52). An artificial neural network-based model explained 90% of the variation of apparent bacterial richness using the concentrations of N-NO(2) and P-PO(4) and the distance to the Black Sea as input parameters. Between the cities of Budapest and Belgrade, apparent bacterial richness was significantly lower than that of other regions of the river, and Chl a showed a pronounced peak. Generally, the bacterial community composition developed gradually; however, an abrupt and clear shift was detected in the section of the phytoplankton bloom. Large impoundments did not have a discernible effect on the bacterial community of the water column. In conclusion, the riverine bacterial community was largely influenced by intrinsic factors.     

Effects of water level on waterbird abundance and diversity along the middle section of the Danube River

We studied the effects of water level in the Danube River on waterbird species abundance and species assemblages along 83?km from the border of Hungary and Slovakia. 651,622 birds of 62 species were counted between 1992 and 2009. The dominant species was Mallard Anas platyrhynchos contributing 436,198 individuals (66.9% of all observations). Throughout the year total numbers of individuals and species richness were negatively correlated with local water level registered on the same day throughout the year. Shannon diversity indices were generally positively correlated with water levels. During floods, dabbling ducks, especially the dominant Anas platyrhynchos, dispersed to peripheral waters, where they are less likely to be counted, and diving ducks (Bucephala clangula, Aythya fuligula and Mergus spp.) left the area entirely, because fast flowing, highly turbid waters reduced local feeding efficiency. Abundance of most waterbird species decreased with elevated water levels. High water levels remove distinctive microhabitats (gravel banks, paved riverbanks and shoals), and create unfavourable conditions of high water velocity and turbidity. Retention of high water levels as a result of damming of the Danube creates long-term conditions similar to natural flooding effects. In our opinion, further manipulation of Danube water levels is likely to reduce waterbird richness and abundance and should be subject to appropriate environmental impact assessment.     

Longitudinal Changes in the Bacterial Community Composition of the Danube River: a Whole-River Approach

The Danube River is the second longest river in Europe, and its bacterial community composition has never been studied before over its entire length. In this study, bacterial community composition was determined by denaturing gradient gel electrophoresis (DGGE) analysis of PCR-amplified portions of the bacterial 16S rRNA gene from a total of 98 stations on the Danube River (73 stations) and its major tributaries (25 stations), covering a distance of 2,581 km. Shifts in the bacterial community composition were related to changes in environmental conditions found by comparison with physicochemical parameters (e.g., temperature and concentration of nutrients) and the concentration of chlorophyll a (Chl a). In total, 43 distinct DGGE bands were detected. Sequencing of selected bands revealed that the phylotypes were associated with typical freshwater bacteria. Apparent bacterial richness in the Danube varied between 18 and 32 bands and correlated positively with the concentration of P-PO₄ (r = 0.56) and negatively with Chl a (r = −0.52). An artificial neural network-based model explained 90% of the variation of apparent bacterial richness using the concentrations of N-NO₂ and P-PO₄ and the distance to the Black Sea as input parameters. Between the cities of Budapest and Belgrade, apparent bacterial richness was significantly lower than that of other regions of the river, and Chl a showed a pronounced peak. Generally, the bacterial community composition developed gradually; however, an abrupt and clear shift was detected in the section of the phytoplankton bloom. Large impoundments did not have a discernible effect on the bacterial community of the water column. In conclusion, the riverine bacterial community was largely influenced by intrinsic factors.     

Inbreeding depression along a life-history continuum in the great tit

Inbreeding resulting from the mating of two related individuals can reduce the fitness of their progeny. However, quantifying inbreeding depression in wild populations is challenging, requiring large sample sizes, detailed knowledge of life histories and study over many generations. Here we report analyses of the effects of close inbreeding, based on observations of mating between relatives, in a large, free-living noninsular great tit (Parus major) population monitored over 41 years. Although mating between close relatives (f > or = 0.125) was rare (1.0-2.6% of matings, depending on data set restrictiveness), we found pronounced inbreeding depression, which translated into reduced hatching success, fledging success, recruitment to the breeding population and production of grand offspring. An inbred mating at f = 0.25 had a 39% reduction in fitness relative to that of an outbred nest, when calculated in terms of recruitment success, and a 55% reduction in the number of fledged grand offspring. Our data show that inbreeding depression acts independently at each life-history stage in this population, and hence suggest that estimates of the fitness costs of inbreeding must focus on the entire life cycle.     

Biodiversity-friendly designs for gravel pit lakes along the Drina River floodplain (the Middle Danube Basin,Serbia)

Wetlands Ecology and Management - Massive gravel excavation is one of the most destructive forces affecting riverine habitats in Europe. However, gravel pit lakes are also recognized as valuable...     

Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time

Shifts in bacterioplankton community composition along the salinity gradient of the Parker River estuary and Plum Island Sound, in northeastern Massachusetts, were related to residence time and bacterial community doubling time in spring, summer, and fall seasons. Bacterial community composition was characterized with denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S ribosomal DNA. Average community doubling time was calculated from bacterial production ([(14)C]leucine incorporation) and bacterial abundance (direct counts). Freshwater and marine populations advected into the estuary represented a large fraction of the bacterioplankton community in all seasons. However, a unique estuarine community formed at intermediate salinities in summer and fall, when average doubling time was much shorter than water residence time, but not in spring, when doubling time was similar to residence time. Sequencing of DNA in DGGE bands demonstrated that most bands represented single phylotypes and that matching bands from different samples represented identical phylotypes. Most river and coastal ocean bacterioplankton were members of common freshwater and marine phylogenetic clusters within the phyla Proteobacteria, Bacteroidetes, and ACTINOBACTERIA: Estuarine bacterioplankton also belonged to these phyla but were related to clones and isolates from several different environments, including marine water columns, freshwater sediments, and soil.     

The significance of zooplankton grazing in a floodplain system of the River Danube

Floodplain systems along rivers are influenced by the hydrologicalregime of the river to an extent which depends on the degreeof connectivity. As a result, the age of water within the systemvaries widely. Zooplankton development is restricted to areasand periods of higher water age and thus the role of zooplanktonin planktonic carbon flow is strongly influenced by the hydrologicaldynamics. In 1997 and 1998 the plankton community was examinedin the floodplain system along the River Danube, at two sectionsdiffering in connectivity to the main river. Zooplankton grazingrates and consumption were calculated, using filtration ratesfrom the literature, based on qualitative and quantitative phyto-and zooplankton data. A succession in grazing dominance fromrotifers to cladocerans and copepods was found with increasingwater age. Maximal carbon flow and impact on algae by grazingrates of >100% (mean 40.5%) were observed at intermediateconnectivity, when zooplankton biomass peaked. Mean grazingimpact at high connectivity amounted to 2.5%, and at low connectivity8.8%, of the total phytoplankton biomass. The main grazers wereSynchaeta spp., Polyarthra spp., and the small cladoceran, Bosminalongirostris. Herbivory dominated carbon transfer in the planktonicfood webs during dynamic conditions. When conditions are stable,additional food pathways (bacterivory, predation) increase insignificance and result in an increased biotic control.     

From sediment to soil: floodplain phosphorus transformations at the Danube River

Substantial transformations of biogeochemical phosphorus (P) fractions can occur within a few hundreds of years under humid and tropical conditions; however, slower changes are expected under dry and temperate climate. The objective of this study was to infer P transformations over time by comparing suspended sediments in the Danube River to floodplain soils developed from such sediments over different time periods in the continental climate of Central Europe. We analyzed suspended sediments from 20 flood events between 1990 and 2006, and floodplain soils from seven sites along a chronosequence covering about 500 yrs. The studied flood sediments had similar characteristics over the 16-yr observation period. Total phosphorus (TP) averaged 732 mg kg⁻¹, and biogeochemical fractionation yielded important primary mineral contributions (apatite phosphorus, AP, ~80% of TP). The TP concentrations of the floodplain soils were in the range of the Danube sediments and showed little variation along the chronosequence. However, the distribution of P among biogeochemical fractions changed considerably in less than 500 yrs of soil development. The youngest soils (<20 yrs) were dominated by AP, as was observed for the Danube sediments. In less than 250 yrs of pedogenesis, AP markedly decreased and organic phosphorus (OP) increased, and in less than 500 yrs, OP reached AP levels. This shows that while P biogeochemistry in very young floodplain soils is strongly related to the river sediments, significant transformations can occur in less than 250 yrs of soil development in the dry and temperate climate of Central Europe.     

Zooplankton abundance in the River Danube, Austria: the significance of inshore retention

1. Zooplankton density was examined in a free-flowing section of the River Danube, Austria. Spatial and temporal patterns were used to identify mechanisms regulating zooplankton dynamics. 2. Zooplankton abundance differed significantly between sampling sites. These differences were the result of variations in water residence time within the habitats. Inshore habitats with low flushing rates act as storage zones for zooplankton. 3. The hydrological conditions govern the number and size of storage zones. In the study area, the highest availability of storage zones was observed at medium water level. 4. Total zooplankton numbers, total rotifer numbers and the densities of the most abundant rotifer taxa were significantly positively related to the availability of adjacent storage zones. 5. The present authors propose that inshore retention capacity, and the hydrological processes and mechanisms controlling the extent of inshore retention may be of major significance in regulated rivers with high water velocities, preventing substantial zooplankton growth in the main channel.     

Zooplankton biomass and community structure in a Danube River floodplain system: effects of hydrology

1. Zooplankton density and biomass was examined in a Danube River floodplain section with highly variable hydrological dynamics. Temporal patterns were analysed to assess the effects of hydrological conditions on zooplankton community structure and the differential response of the two major zooplankton taxa, rotifers and crustaceans.
2. Calculated floodplain water age was used as an integrated parameter describing hydrological conditions and connectivity.
3. Total zooplankton biomass, crustacean biomass and crustacean species number were significantly positively related to water age. Rotifer biomass followed a hump-shaped relationship with water age, and rotifer species number decreased with increasing water age.
4. Rotifers dominated the community in periods of low to medium water ages. In periods of higher water ages the community was dominated by crustaceans.
5. We propose that the hydrological regime of floodplains is crucial for zooplankton biomass patterns and succession, through the alternation of washing-out effects, taxon-specific potential of reproduction and biological interactions. Flood events and high water levels reset the community to an early successional phase.     

Phenotypic differentiation of Ponto-Caspian gobies during a contemporary invasion of the upper Danube River

Evolution is known to act on contemporary timescales and invasive organisms are often used to study rapid evolutionary changes of geno- and phenotypes under natural conditions. The ability and speed of local adaptation is discussed as a key character triggering successful invasions. Variation of body shape among populations of two highly invasive, sympatric Ponto-Caspian goby species (Teleostei: Gobiidae) with a comparable invasion history in the upper Danube River, i.e. Neogobius melanostomus and Ponticola kessleri, was assessed using geometric morphometric methods. Phenotypic variation established within less than 15 generations was evident in both species. It was mainly correlated with geographical location, but in N. melanostomus also with substrate type, an ecological variable reflecting habitat quality. The two species differed in their degree of intraspecific variation which was more pronounced in N. melanostomus, the numerically dominant invader in the upper Danube. Body shape variation significantly correlating with geographical rather than ecological variables suggests a heritable component and renders phenotypic plasticity as a lone explanation unlikely. Patterns of body shape similarity among upper Danubian goby populations suggest a stepping-stone rather than a continuous expansion model for both species, where multiple introductions, possibly from various origins, may have shaped differentiation.     

Method-integrated fish assemblage structure at two spatial scales along a free-flowing stretch of the Austrian Danube

Fish assemblages in large rivers are highly diverse communities. However, a single method to describe these complex systems adequately is not available as of yet. In this paper we propose a combination of normalized catch-per-unit-effort data of three fish sampling methods, thus providing a more inclusive representation of the overall assemblage. We investigate fish species occurrence and abundance in a survey at three consecutive sites in the free-flowing main channel of the Austrian Danube east of Vienna. Using boat and wading electrofishing, as well as longline fishing we collected data in four mesohabitats at each site. We analysed richness, assemblage structure and abundance of single species and tested site and mesohabitat as differentiating forces on the fish assemblage structure, applying PERMANOVA and NMDS. The investigated sites are populated by a species-rich fish assemblage, of which we collected a total of 36 species. The composition of the assemblage was rather consistent except for the occasional occurrence of rare species. At the smaller mesohabitat scale, however, the assemblages differed considerably and hydromorphological conditions were apparently the major structuring force. Overall, the combination of methods considerably improves the assessment across sites and mesohabitats and contributes to our understanding of large river fish assemblages.     

Production of benthic macroinvertebrate communities along a southern Appalachian river continuum

1. Annual production was estimated for macroinvertebrate communities of principle habitats along a first- to seventh-order river continuum in the southern Appalachian Mountains (U.S.A.). Annual production was relatively low in depositional habitats, pebble/gravel substrata, and on cobble devoid of plant biomass (mosses and hydrophytes). Production was greater in bedrock habitats and greatest on hydrophyte-covered cobble, with estimates reaching 364 g AFDM (ash-free dry mass)m^–2 yr^–1 in a sixth-order river reach. Annual production in depositional habitats was correlated to standing crops of benthic organic material (BOM) in low-order stream reaches but not in higher-order reaches, indicating differences in BOM availability with stream size. In cobble, pebble/gravel and bedrock habitats production was significantly correlated to standing crops of aquatic plants, which can stabilize substrata and enhance access of collector-filtering invertebrates to entrained food resources. 2. By accounting for proportional availability of habitats along the continuum, estimates of total production ranged from 5 to 154 g AFDM m^–2 yr^–1, and increased significantly with stream size. Annual production estimated for sixth- and seventh-order reaches of the continuum were amongst the highest reported thus far for lotic systems. Organization of the benthic community along the continuum, based on production estimates for individual functional feeding-groups, generally supported predictions of the River Continuum Concept (RCC): shredder contributions were greatest in low-order reaches and declined downstream; scraper percentages were greatest in the middle of the continuum; collector-filterer contributions increased with increasing stream size. Longitudinal trends for collector-gatherers and predators did not support RCC predictions; these groups appeared to be influenced by localized changes in habitat availability and occurrence of vertebrate predators along the continuum.     

Complexity of bacterial communities in a river-floodplain system (Danube, Austria)

Natural floodplains play an essential role in the processing and decomposition of organic matter and in the self-purification ability of rivers, largely due to the activity of bacteria. Knowledge about the composition of bacterial communities and its impact on organic-matter cycling is crucial for the understanding of ecological processes in river-floodplain systems. Particle-associated and free-living bacterial assemblages from the Danube River and various floodplain pools with different hydrological characteristics were investigated using terminal restriction fragment length polymorphism analysis. The particle-associated bacterial community exhibited a higher number of operational taxonomic units (OTUs) and was more heterogeneous in time and space than the free-living community. The temporal dynamics of the community structure were generally higher in isolated floodplain pools. The community structures of the river and the various floodplain pools, as well as those of the particle-associated and free-living bacteria, differed significantly. The compositional dynamics of the planktonic bacterial communities were related to changes in the algal biomass, temperature, and concentrations of organic and inorganic nutrients. The OTU richness of the free-living community was correlated with the concentration and origin of organic matter and the concentration of inorganic nutrients, while no correlation with the OTU richness of the particle-associated assemblage was found. Our results demonstrate the importance of the river-floodplain interactions and the influence of damming and regulation on the bacterial-community composition.     

Endangered migratory sturgeons of the lower Danube River and its delta

Historically, five acipenserid species migrated from the Black Sea into the Danube River: beluga Huso huso, Russian sturgeon Acipenser gueldenstaedtii, stellate sturgeon A. stellatus, ship sturgeon A. nudiventris, and perhaps European Atlantic sturgeon A. sturio. The freshwater sterlet A. ruthenus thrived in the Danube and its tributaries. Presently, only three anadromous species occur in the Romanian part of the Danube, Huso huso, A. gueldenstaedtii, and A. stellatus, while A. ruthenus lives in the Danube and its tributaries. Extreme depletion in the number of sturgeons was caused by many, primarily anthropogenic, factors which affected the Danube and the Black Sea shelf during recent last decades. Measures necessary for saving anadromous sturgeon species in the lower Danube are recommended.     

Characterisation of the potamal Danube River and the Delta: connectivity determines indicative macrophyte assemblages

The complexity of water bodies in the eu-potamal river corridor and the main delta channels of the Romanian Danube is exemplified by the macrophyte vegetation. Two hypotheses provided the background for our study: (a) is the macrophyte vegetation of large, permanently connected branches significantly separated from that of the main river channel; (b) is the macrophyte composition of the Danube main stem significantly altered when the river divides into the three large navigable Delta channels. Water bodies considered were two contiguous sections of the main river channel, two large branches remaining from the historical floodplain, and the three main Delta channels. We quantified macrophyte diversity and floristic variation. Our data set was prepared from the MIDCC-project data base, in which macrophyte occurrence, abundance and habitat parameters are stored for contiguous survey units of the whole Danube river corridor. Field survey method followed that of Kohler and the European Standard EN14184. Results confirmed our first hypothesis: permanently connected side branches still support significantly different macrophyte assemblages, making them important indicators of floodplain connectivity. The diversion of the Danube into its three large navigable delta channels significantly alters the macrophyte vegetation from the c. 300 km of main stem up-river, substantially supporting our second hypothesis. Our results largely enhance the knowledge on aquatic plant biodiversity in the eu-potamal Danube, forming a solid base for long-term studies. We also discuss the relevance of our results regarding the ecological, as well as the conservational, quality of rivers and their floodplains.     

Change of bacterial communities in sediments along Songhua River in Northeastern China after a nitrobenzene pollution event

More than 100 tons of nitrobenzene and related compounds were released into Songhua River due to the explosion of an aniline production factory in November, 2005. Sediment samples were taken from the heavily polluted drainage canal, one upstream and three downstream river sites. The change of bacterial community structures along the river was studied by denaturing gradient gel electrophoresis (DGGE) and cloning and sequencing of 16S rRNA genes with five clone libraries constructed and 101 sequences acquired representing 172 clones. Both DGGE profiles and sequences of 16S rRNA genes from clone libraries demonstrated that the contaminated drainage canal and three downstream river sites were similar in that all had Betaproteobacteria , mainly grouped into Comamonadaceae , as the dominant group of bacteria, and all had Firmicutes , primarily as Clostridium spp. These results suggest that these latter two groups of bacteria may play potential roles in degradation and detoxification of nitrobenzene in the present contaminated river environments.