Some theoretical considerations on cytosolic redox balance during anaerobiosis in marine invertebrates

Studies on anaerobiosis in marine invertebrates have shown that many rely on malate, octopine, or alanopine dehydrogenases, rather than lactate dehydrogenase, for cytosolic redox balance. These systems were studied by computer simulations with the assumption that these dehydrogenases maintain their substrates and products at instantaneous equilibrium. The simulations permit a study of the redox ratio (NADH/NAD⁺) as a function of the concentration of lactate, malate, or octopine. The redox ratio was found to increase as these products accumulated. It was substantially less in the simulations of malate and octopine dehydrogenases when compared to those of lactate dehydrogenase. This factor may be important for maintaining glycolysis in these organisms, and suggests an advantage for the use of octopine dehydrogenase rather than its analogue lactate dehydrogenase.     

The polyphyletic origin of endoparasitism in the cyclostome lineages of Braconidae (Hymenoptera)

Abstract. The evolution of endoparasitism in braconid wasps is demonstrably polyphyletic, not only within the family as a whole but even within the rogadine/exothecine assemblage of genera. A cladistic analysis of rogadine and exothecine genera, coupled with an optimization approach to estimating ancestral character states, is used to analyse the evolution of various aspects of endoparasitism within this assemblage. At least two independent origins of endoparasitism are hypothesized-one in the Rodagini and the other in an assemblage including the Gnaptodontini, Opiinae and Alysiinae.
Phylogenetic analyses and hypotheses can be useful not only in interpreting evolutionary trends, but in guiding and providing insights into more general comparative behavioural and physiological studies of parasitism.     

First report of brachiopod–brachiopod endoparasitism

Schemm-Gregory, M. & Sutton, M. 2010: First report of brachiopod–brachiopod endoparasitism. Lethaia , Vol. 43, pp. 111–115.
The first example of brachiopod–brachiopod endoparasitism is reported from the Lower Devonian of China. Three-dimensional reconstructions following serial sectioning show a specimen of a strophomenide ( Dicoelostrophia sp.) within an articulated shell of the spiriferide Rostrospirifer tonkinensis ; morphological modifications of the host and the positioning of the strophomenide with respect to the inhalant current demonstrate the in vivo nature of the association. The symbiosis is interpreted as parasitic; it appears to be facultative but demonstrates the viability of this mode of life, expanding the ecological range known to be exploitable by the Brachiopoda. □ 3-D reconstruction , Brachiopoda , Dicoelostrophia , endoparasitism , Lower Devonian , Rostrospirifer .     

Differential effects of endoparasitism on the expression of carotenoid- and melanin-based ornamental coloration

The striking diversity of sexual dimorphisms in nature begs the question: Why are there so many signal types? One possibility is that ornamental traits convey different sets of information about the quality of the sender to the receiver. The colourful, pigmented feathers of male birds seem to meet the predictions of this hypothesis. Evidence suggests that carotenoid pigmentation reflects the nutritional condition of males during moult, whereas in many instances melanin pigmentation is a reliable indicator of social status. However, as of yet there have been no experimental tests to determine how these two ornament types respond to the same form of environmental stress. In this study, we tested the effect of endoparasitic infection by intestinal coccidians (Isospora sp.) on the expression of both carotenoid- and melanin-based ornamental coloration in captive male American goldfinches (Carduelis tristis). We found that the carotenoid-based plumage and bill coloration of parasitized males was less saturated than that developed by unparasitized males, but that the brightness and size of melanin-based black caps did not differ between the groups. These findings provide the most robust empirical support to date for the notion that carotenoid and melanin ornaments reveal different information to conspecifics.     

On the origin of plastids

The buoyant density in CsCl of ribosomes from chloroplasts of the green algaChlorella pyrenoidosa and two species of higher plants,Pisum sativum andChenopodium album, has been studied. From the relative protein content it was calculated that 70S ribosomes from chloroplasts are much smaller than 80S cytoplasmic ribosomes (3.0–3.1×10⁶ and 4.0×10⁶ daltons) and slightly larger than 70S ribosomes from abcteriaE. coli 2.5×10⁶ daltons). Chloroplast ribosomes from pea seedlings were analyzed by two-dimensional polyacrylamide gel electrophoresis. They appear to contain 71 proteins. This indicates that chloroplast ribosomes contain a larger number of proteins than do the ribosomes fromE. coli and other species of Enterobacteriaceae. Further study will permit a probable evaluation of the validity of Mereschkowsky's hypothesis that the photosynthetic plastids of eukaryotic plant cells are the evolutionary descendants of endosymbiotic blue-green algae.     

On the origin of feathers

The appearance of feathers defines the appearance of birds. A number of changes defined, preceded or accompanied the event. The changes were hierarchical in nature and included revolutions in genomic organization (i.e., HOX and the feather keratin genes), protein sequence and shape, the large scale organization of proteins into filaments, and in the geometry of the cells and their roles in the follicle. Changes at each of these levels differ or produced different products than found in its analog in reptiles. They are essentially unique to birds and produced an evolutionary novelty. I used analysis of extant structure and information on development to reconstruct key events in the evolution of feathers. The ancestral reptilian epidermal structure, while probably a scale or tubercles, is still unidentified. The structural genes of feather proteins (φ-keratin) are tandem repeats probably assembled from pre-existing exons. They are unlike the alpha-keratin of vertebrate soft epidermis. Amino-acid composition, shape, and behavior of feather keratins are unique among vertebrates. The 3-dimensional organization of the follicle and the developmental processes are also unique. Although we lack a complete understanding of the appearance and early role of feathers, they are clearly the results of novel events.     

On the origin of photophosphorylation

A model based on quinol phosphates is proposed for the origin of photophosphorylation. This model is divided into three time periods. In the early period, when the primitive earth was under reducing conditions, quinol phosphates were produced through quinol radical intermediates formed by the activation of hydroquinones with ultraviolet light. Phosphorylation of a number of acceptor molecules including inorganic orthophosphate and adenosine diphosphate occurred when quinol phosphate was oxidized by Fe⁺³ or a water soluble iron-sulfur complex. After the appearance of a rudimentary ozone layer (middle period), ultraviolet light was no longer an important factor in primordial chemistry. Quinol phosphates were then produced by visible light activation of porphyrin-quinone charge transfer complexes. In the presence of light, electrons from H₂S, H₂ and several reduced organic compounds were transfered through the porphyrin to quinone yielding the quinol radical. Again, quinol phosphate was produced from breakdown of the free radical. Phosphorylation of a number of acceptor molecules was achieved when quinol phosphates were oxidized by the iron-sulfur complexes. Evolutionary pressure to increase the efficiency of these reactions resulted in the electron donor-porphyrin-quinone-iron-sulfur complex becoming more lipophilic and thus associated with the protomembrane of the evolving protocell. In the late period the protomembrane became more sophisticated and quinone was replaced as the primary electron acceptor in the photoprocess by one of the iron-sulfur complexes originally present as oxidizing agents for the quinol phosphates. Quinones eventually lost their role as phosphorylating agents and became only electron and proton shuttles in the evolving electron transport chain. The protocell evolved the ability to use water as the electron donor as the relative roles of iron and quinone in the photoprocess switched.     

On the origin of life

On the basis of the recently proposed new fundamental equation of mathematical biophysics, a suggestion is made for a theory of the formation of a primitive cell from nonliving material. The discussion includes a suggestion for a quantitative formulation of the degree of biological organization. It is shown that according to the fundamental equation of mathematical biophysics, organization of the nonliving material may spontaneously increase under certain conditions, leading to a formation of a primitive organism. This process however, is a very slow one, requiring time intervals of several years or even decades. This may account for the failure in observing or artificially producing spontaneous generation.     

On the origin of prokaryotes

It has been a tacit assumption of evolutionary theory that the closest surviving relatives of the first cellular organisms are to be found among prokaryotes. This paper draws attention to the fact that many stages of evolution appear to have been accompanied by physical loss of superfluous DNA. It is postulated that the genomes of prokaryotes—where almost every gene is represented by one copy only—represent the results of this process carried to its extreme. On this basis certain features of very early evolution which have been eliminated from prokaryotes may survive in eukaryotes. If correct, the hypothesis would require a careful re-evaluation of the assumptions underlying use of some sequence data to construct phylogenetic trees.     

On the origin of neurons

A report on the conference 'Neurogenesis 2007', Tokyo, Japan, 15-16 May 2007.