桑树内生拮抗细菌Burkholderia cepacia Lu10-1的分离鉴定及其内生定殖

[目的]对从健康桑树叶片中分离到的一株内生拮抗细菌Lu10-1进行鉴定,并探讨该菌株在桑树体内的定殖.[方法]通过形态观察、生理生化指标测定及16S rRNA基因序列同源性分析,结合recA基因特异引物PCR检测法对菌株Lu10-1进行分类学鉴定;以抗利福平(Rif)和氨苄青霉素(Amp)双抗药性为标记,采用浸种、浸根、涂叶和针刺等方法接种,测定Lu10-1菌株在桑树体内的定殖.[结果]结果表明,菌株Lu10-1属于伯克霍尔德氏菌属(Burkholderia),与亲缘关系较近菌株B.cepacia(X80284)的同源性达98%,该菌株的16S rDNA序列已在GenBank中注册,登录号为EF546394;Lu10-1菌株浸种接种后,菌株在桑苗组织中的数量总体上呈现下降趋势,到第20天后菌量趋于稳定;细菌浸根接种后,菌株在茎叶部定殖的菌量均呈现出"先增后降"的趋势.[结论]内生拮抗细菌Lu10-1归属于洋葱伯克霍尔德氏菌基因型Ⅰ(Burkholderia cepacia genomovar Ⅰ);该菌株可在桑树体内长期定殖并传导,且在定殖过程中菌株的拮抗性能未改变;为将该菌株导入桑树体内进行病害的生物防治提供了理论依据.     

一株拮抗辣椒疫霉的假单胞菌的分离与鉴定

从甜椒根际土壤中分离到一株对辣椒疫霉(Phytophthora capsici)具有强拮抗作用的假单胞属(Pseudomonasspp.)菌株GP72,研究其拮抗性表明,对多种植物病原真菌均有很强的抑制作用。对该菌株进行形态特征、生理生化、Biolog GN、(G C)mol%含量测定及16S rDNA序列分析,鉴定为绿针假单胞菌(Pseudomonas chlororaphis)。特征为单细胞,极生单个鞭毛,不能利用聚β-羟基丁酸盐,能够较强地利用Biolog系统95种碳源中的45种作为底物生长,较弱利用其中的6种底物,与绿针假单胞菌(Pseudomonas chlororaphis)的相似性达到98%,相似指数为0.72。用热解链方法测得基因组DNA的(G C)mol%含量为65.1mol%。以16S rDNA序列为基础构建了包括13株邻近种属细菌在内的系统发育树,其中与模式致金色假单胞菌的同源性最近。     

一株多环芳烃降解菌的鉴定及GST基因克隆和序列分析

由石油污染土壤中分离到一株能以多环芳烃（菲、芴、萘）为唯一碳源的细菌,经形态观察、生理生化（BiologGN）和 G+C mol%分析,鉴定该菌为少动鞘氨醇单胞菌(Sphingomonas paucimobilis)。与16S rDNA序列同源性的比较进一步确证了鉴定结果。经菲诱导后的细菌谷胱甘肽S转移酶（Glutathione Stransferase, GST）酶活明显高于未诱导前,表明谷胱甘肽S转移酶可能与多环芳烃的降解有关。根据该酶基因的同源性序列设计引物,PCR扩增出编码谷胱甘肽S转移酶基因片段,进一步证实在该菌中有GST的存在。测序后基于编码GST的基因所进行的系统发育分析表明,该多环芳烃降解菌与其它多环芳烃降解菌在进化上亲缘关系较近。     

患病大鲵中弗氏柠檬酸杆菌的分离与鉴定

【目的】确定导致大鲵(Andrias davidianus)细菌性感染死亡的病原。【方法】从大鲵肝脏中分离细菌,通过Biolog微生物自动鉴定系统及分子生物学方法对纯培养的细菌进行鉴定,再用大鲵和鲫鱼分别进行人工感染试验,以确定分离菌的致病性,同时对分离到的病原菌进行药物敏感试验。【结果】从患病大鲵肝脏中分离到一株致病菌JZ01,经人工感染健康大鲵,可复制与自然发病相同的症状,且从人工感染病鲵体内再次分离到相同的病原菌。该致病菌对健康鲫鱼也有致病性。经Biolog微生物自动鉴定系统的鉴定,以及进一步的16S rDNA基因序列和系统发育分析都表明,此致病菌为弗氏柠檬酸杆菌。药物敏感性试验表明,该菌株对氨曲南、头孢三嗪、先锋噻肟等9种药物高度敏感。【结论】弗氏柠檬酸杆菌是大鲵的一种致病菌。本文在国内外首次报道了该菌对大鲵具有致病性。     

产琥珀酸放线杆菌的分离鉴定及其对瘤胃微生物发酵的影响

采用厌氧分离技术从奶牛瘤胃中分离出1株细菌,通过对其形态、培养特性、生化特性、16S rRNA基因序列测定与同源性分析的研究,确定分离菌株为产琥珀酸放线杆菌（Actinobacillus succinogenes）,体外发酵实验表明,发酵液中挥发性脂肪酸浓度（VFA）明显升高,乳酸浓度明显降低,对反刍动物的能量代谢和酸中毒具有一定的调节作用。     

胆固醇转化菌株的筛选及发酵条件优化

【目的】从土壤中筛选及鉴定具有转化胆固醇能力的菌株SE-1,对转化产物进行结构鉴定,并通过一定的工艺条件优化提高转化产率。【方法】利用胆固醇为唯一碳源筛选能转化胆固醇的菌株SE-1,对菌株进行形态、生理生化特征试验及16S rRNA基因序列同源性分析确定该菌株的系统发育学地位。发酵转化产物经氯仿萃取,对转化产物进行硅胶板薄层层析法分析,用硅胶柱层析法、Sephadex LH20分离产物,通过1H-NMR、13C-NMR分析确定转化产物的化学结构。对菌株转化胆固醇的发酵培养基的碳源、氮源、底物添加方式及发酵条件进行优化。【结果】菌株SE-1为革兰氏阴性菌,生理生化特征与洋葱伯克霍尔德氏菌(Burkholderia cepacia)相似,16S rRNA序列与洋葱伯克霍尔德氏菌(GenBank No.U96927)相似性为99%。硅胶薄层层析显示转化产物为两种产物。发酵转化时,在胆固醇-吐温乳化液的添加量为1 g/L,碳源糖蜜5%,氮源(NH4)2SO40.3%,接种量4%,发酵液pH7.5,36℃发酵的条件下,7β-羟基胆固醇的产率最高,达到34.4%。【结论】分离得到的菌株SE-1鉴定为Burkholderia cepacia。菌株SE-1转化胆固醇的主产物为7β-羟基胆固醇,次产物为7-酮基胆固醇,胆固醇7β-羟基化转化率在最适的转化条件下比优化前提高了20.8%。     

Viili乳制品中干酪乳杆菌的分离鉴定

从引进Viili乳制品中筛选、鉴定出3种优良乳酸菌。采用平板分离法从Viili乳制品中分离3株乳酸菌,通过表型1、6S rRNA的PCR扩增、克隆、测序鉴定。3株乳酸菌的表型鉴定结果符合伯杰细菌鉴定手册中乳杆菌属的干酪乳杆菌,16S rRNA序列同源性分析结果表明3株分离菌与干酪乳杆菌的同源性分别为99.93%、100.00%9、9.78%,从Viili乳制品分离到3株干酪乳杆菌。     

土壤中产脂肪酶洋葱伯克霍尔德菌的分离与鉴定

洋葱伯克霍尔德菌(Burkholderia cepacia)在生物防治、生物降解等农业领域有着广泛的应用,它产生的脂肪酶则在有机合成、精细化工等领域潜力巨大。采用改良的TB-T平板筛选法从土壤中初步筛选出300株洋葱伯克霍尔德菌,然后用脂肪酶活性检测平板对300株菌进行筛选,最终获得6株脂肪酶产量高的菌,通过发酵发现6株菌均有较好的产脂肪酶能力。随后通过16S rDNA比对的方法将6株全部鉴定为B.cepacia。在此基础上,采用HaeⅢ-recA RFLP和基因种特异性PCR对6株菌进行了基因种鉴定,结果表明JWT16、G63YL、WJ158和JWT137属于Burkholderia cenocepacia菌,JWP9属于Burkhold-eria vietnamiensis,JWT267则属于Burkholderia multivorans。     

牙龈卟啉杆菌的分离培养与鉴定

牙龈卟啉杆菌（Ｐｏｒｐｈｙｒｏｍａｎｕｓｇｉｎｇｉｖａｌｉｓ．Ｐｇ）与成年人慢性牙周炎有密切关系。我们对７６例慢性成人牙周炎龈下菌斑中的Ｐｇ菌进行了分离培养鉴定,共分离出Ｐｇ５５株。从表型特征上看Ｐｇ与其它２株卟啉杆菌极为相似,经ＤＮＡ同源性测定Ｐｇ菌具有高度同源性、且Ｐｇ抗血清特异性较强,血清学手段可作为辅助鉴定该菌的简便方法。本文还对Ｐｇ菌超显微结构进行了研究。     

天山北坡甜菜内生菌分离鉴定及其动态变化

对新疆昌吉和石河子两地种植的甜菜内生菌进行了分离、鉴定和分析,结果表明甜菜内生菌多属于细菌,其中假单胞菌 (Pseudomonas sp. )和芽孢菌类(Bacillus sp.)的分离频率分别在33.2%～59.2%和12.7%～28.1%,是甜菜植株中的优势内生菌群.16S rDNA 和 ITS 序列同源性比较和系统发育分析表明内生菌具有丰富的多样性.根中内生菌的多样性高于茎、叶,昌吉地区种植的甜菜中分离出的内生菌种类较多.从感病品种及生长不良甜菜植株中分离出的内生菌种类比较丰富.通过回接分离及利用扫描电镜观察内生菌在植物体内分布发现,内生菌能够定殖于甜菜块根.     

Cloning and expression of a novel esterase gene cpoA from Burkholderia cepacia

AIMS: To screen and clone a novel enzyme with specific activity for the resolution of (R)-beta-acetylmercaptoisobutyrate (RAM) from (R,S)-beta-acetylmercaptoisobutyrate [(R,S)-ester]. METHODS AND RESULTS: A micro-organism that produces a novel esterase was isolated and identified as the bacterium Burkholderia cepacia by using the analysis of cellular fatty acids, Biolog automated microbial identification/characterization system, and 16S rRNA gene sequence analysis. A novel esterase gene was cloned from the chromosomal DNA of B. cepacia and was designated as cpoA. The cpoA encodes a polypeptide of 273 amino acids which shows a strong sequence homology with many bacterial nonhaeme chloroperoxidases. In addition, a typical serine-hydrolase motif, Gly-X-Ser-X-Gly, and the highly conserved catalytic triad, Ser95, Asp224, and His253, were identified in the deduced amino acid sequence of cpoA by multiple sequence alignment. CONCLUSION: The cpoA cloned from B. cepacia encodes a novel esterase which is highly related to the nonhaeme chloroperoxidases. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first report that describes the isolation and cloning of a serine esterase gene from B. cepacia, which is useful in the chiral resolution of (R,S)-ester. The cloned gene will allow additional research on the bifunctionality of the enzyme with esterase and chloroperoxidase activity at the structural and functional levels.     

Characterization of a Phenazine-Producing Strain Pseudomonas chlororaphis GP72 with Broad-Spectrum Antifungal Activity from Green Pepper Rhizosphere

A new Pseudomonas strain, designated GP72, was isolated from green pepper rhizosphere and identified as a member of species Pseudomonas chlororaphis based on morphology; conventional biochemical and physiologic tests; Biolog GN system (Biolog Inc., Hayward, CA); and 16S rDNA sequence analysis. The secondary metabolites produced by this strain have shown broad-spectrum antifungal activity against various phytopathogens of agricultural importance in vitro. Two main antifungal substances produced by this strain proved to be phenazine-1-carboxylic acid and 2-hydroxyphenazine with further purification and structure elucidation based on ultraviolet-absorbent spectrum scanning, atmospheric pressure chemical ionization–mass spectrometry (APCI-MS) spectrum, and ¹H,¹³C nuclear magnetic resonance spectrums. Strain GP72 could produce quorum-sensing signaling molecules of N-butanoyl-L-homoserine lactone and N-hexanoyl-L-homoserine lactone, which were found to accumulate with different quantities in King’s medium B and pigment producing medium, respectively.     

Evidence of transmission of Burkholderia cepacia, Burkholderia multivorans and Burkholderia dolosa among persons with cystic fibrosis

Previous studies have identified specific Burkholderia cepacia complex strains that are common to multiple persons with cystic fibrosis (CF). Such so-called epidemic strains have an apparent enhanced capacity for inter-patient spread and reside primarily in Burkholderia cenocepacia (formerly B. cepacia complex genomovar III). We sought to identify strains from B. cepacia complex species other than B. cenocepacia that are similarly shared by multiple CF patients. We performed genotype analysis of 360 recent sputum culture isolates from 360 persons residing in 29 cities by using repetitive extragenic palendromic polymerase chain reaction (rep-PCR) and pulsed field gel electrophoresis. The results indicate that sharing of a common Burkholderia multivorans strain occurs relatively infrequently; however, several small clusters of patients infected with the same strain were identified. A cluster of seven patients infected with the same B. cepacia (genomovar I) strain was found. We also identified a large group of 28 patients receiving care in the same treatment center and infected with the same Burkholderia dolosa strain. These observations suggest that B. cepacia complex strains in species other than B. cenocepacia may be spread among CF patients.     

Detection and partial characterization of a bacteriocin produced by Carnobacterium piscicola 213

BLIS 213, is a bacteriocin-like inhibitory substance produced by Carnobacterium piscicola 213. It is active against Carnobacterium, Enterococcus and Listeria spp. No activity was observed against tested Lactobacillus, Lactococcus, Leuconostoc and Pediococcus strains, nor against Gram-negative bacteria. The BLIS 213 activity was inactivated by several proteolytic enzymes. It was heat resistant (121°C for 20 min), and stable over a pH range of 2–8. Activity was determined by a dilution micromethod; it was increased after SDS treatment. A mutant strain which lacks bacteriocin production was isolated and designated as Carnobacterium piscicola 213a. It had the same phenotypic and biochemical properties as the parent strain, and was not sensitive to bacteriocin activity. The apparent molecular weight of the bacteriocin in the crude extract was greater than 10 kDa. It was about 6 kDa after SDS-PAGE of a partially purified bacteriocin by adsorption on producer cells. The isoelectric point of the BLIS 213 was around 9.3. Received 21 January 1997/ Accepted in revised form 25 April 1997     

Evaluation of preservative effectiveness in pharmaceutical products : the use of a wild strain of Pseudomonas cepacia

A sodium benzoate-sorbic acid preservative system of a pharmaceutical product was proved effective against a wild strain of Pseudomonas cepacia , following the official method of the Italian and British Pharmacopoeias. However, this preservative system was ineffective against a challenge of Ps. cepacia wild strain cells grown in the unpreserved pharmaceutical product and on culture media different from those described by the Pharmacopoeias. The adaptive resistance of the wild strain of Ps. cepacia was not demonstrated with a laboratory strain (ATCC 25609). In contrast, p- hydroxybenzoate-based preservative systems proved to be efficient in protecting the pharmaceutical product against a challenge of wild and laboratory strains of Ps. cepacia grown in the different conditions described above. The results obtained suggest the usefulness, in the official methods for testing pharmaceutical preservatives, of using wild microbial strains isolated from the pharmaceutical environment. Metabolic adaptive responses, capable of affecting the antimicrobial sensitivity of wild micro-organisms used to challenge the preserved product, can be detected by using cells grown in the unpreserved pharmaceutical product.     

Zoospore homing and infection events: effects of the biocontrol bacterium Burkholderia cepacia AMMDR1 on two oomycete pathogens of pea (Pisum sativum L.)

Burkholderia cepacia AMMDR1 is a biocontrol agent that protects pea and sweet corn seeds from Pythium damping-off in field experiments. The goal of this work was to understand the effect of B. cepacia AMMDR1 on Pythium aphanidermatum and Aphanomyces euteiches zoospore homing events and on infection of pea seeds or roots. In vitro, B. cepacia AMMDR1 caused zoospore lysis, prevented cyst germination, and inhibited germ tube growth of both oomycetes. B. cepacia AMMDR1 also reduced the attractiveness of seed exudates to Pythium zoospores to nondetectable levels. However, when present at high levels on seeds, B. cepacia AMMDR1 had little net effect on zoospore attraction, probably because it also enhanced seed exudation. Seed-applied B. cepacia AMMDR1 dramatically reduced the incidence of infection by Pythium zoospores in situ compared with an antibiosis-deficient Tn5 mutant strain. This mutant strain also decreased Pythium infection incidence to some extent, but only when the pathogen inoculum potential was low. B. cepacia AMMDR1 did not affect attraction of Aphanomyces zoospores or Aphanomyces root rot incidence. These results suggest that B. cepacia AMMDR1 controls P. aphanidermatum largely through antibiosis, but competition for zoospore-attracting compounds can contribute to the effect. Differences in suppression of Aphanomyces and Pythium are discussed in relation to differences in the ecology of the two pathogens.     

黄瓜苗根围拮抗细菌X3的分子鉴定

采用生理生化、Biolog和16S rDNA分子鉴定3种不同方法,对抑制黄瓜苗期猝倒病病原真菌的细菌菌株X3进行了鉴定．生理生化鉴定显示该菌株为Pseudomonas aeruginosa;而Biolog鉴定显示其为P．spinosa;进一步对该菌株作16S rDNA基因的测定与分析,表明其与已报道的P．aeruginosa 16S rDNA具有93．7％的同源性,二者在所建系统发育树中处于同一分枝,据此确定该菌株为P．aeruginosa。     

Antigenic polysaccharides of bacteria. 35. Establishment of the structure of polysaccharide chains of lipopolysaccharides of Pseudomonas cepacia IMV 4176 and IMV 4202 (Serotype 3)

On mild acid degradation of the Pseudomonas cepacia strain IMV 4176 lipopolysaccharide, two polysaccharides were obtained, one of which is a homopolymer of N-acetyl-D-galactosamine and the other is composed of equal amounts of N-acetyl-D-galactosamine and D-ribose. Partial hydrolysis with aqueous oxalic acid caused depolymerization of the heteropolysaccharide, and the homopolysaccharide was isolated in the individual state. On the basis of methylation and 13C NMR analysis, it was concluded that both polysaccharides are built up of disaccharide repeating units having the following structures: ----4)-alpha-D-GalpNAc-(1----4)-beta-D-GalpNAc-(1---- and ----4)-alpha-D-GalpNAc-(1----2)-beta-D-Ribf-(1----. The heteropolysaccharide from P. cepacia strain 4176 is identical by the structure of the repeating unit to the O-specific polysaccharide of P. cepacia strain IMV 4202 (serotype 3), Pseudomonas aeruginosa O12 and Serratia marcescens O14.     

Isolation,identification and characterization of <Emphasis Type="Italic">Bacillus subtilis</Emphasis> ZJB-063, a versatile nitrile-converting bacterium

Strain ZJB-063, a versatile nitrile-amide-degrading strain, was newly isolated from soil in this study. Based on morphology, physiological tests, Biolog and the 16S rDNA sequence, strain ZJB-063 was identified as Bacillus subtilis. ZJB-063 exhibited nitrilase activity without addition of inducers, indicating that the nitrilase in B. subtilis ZJB-063 is constitutive. Interestingly, the strain exhibited nitrile hydratase and amidase activity with the addition of ɛ-caprolactam. Moreover, the substrate spectrum altered with the alteration of enzyme systems due to the addition of ɛ-caprolactam. The constitutive nitrilase was highly specific for arylacetonitriles, while the nitrile hydratase/amidase in B. subtilis ZJB-063 could not only hydrolyze arylacetonitriles but also other nitriles including some aliphatic nitriles and heterocyclic nitriles. Despite comparatively low activity, the amidase of hydratase/amidase system was effective in converting amides to acids. The versatility of this strain in the hydrolysis of various nitriles and amides makes it a potential biocatalyst in organic synthesis.