Major histocompatibility complex of the mole-rat

The mole-rat, Spalax ehrenbergi, is a complex subterranean rodent species whose habitat is restricted largely to the Middle East and North Africa. We typed over 50 mole-rats with mouse monoclonal and polyclonal antibodies specific for class I and class II major histocompatibility complex (Mhc) molecules. Some of these antibodies were produced against mouse Mhc molecules, others against Mhc molecules of other species. About 25% of the antibodies reacted with mole-rat lymphocytes in the cytotoxic test. Some of the serologically positive antibodies precipitated from a glycoprotein pool of mole-rat spleen cell molecules that corresponded in size with class I and class II molecules of other species. We conclude, therefore, that mole-rats, like other mammals, possess the Mhc which consists of class I and class 11 loci. We call this Mhc Spalax major histocompatibility (Smh) complex. The occurrence of a large number of different serotypes among the tested animals suggests that Smh loci are polymorphic. This Mhc polymorphism of the mole-rat contrasts with the monomorphism or oligomorphism of the Syrian hamster, a rodent with a similar ecology. Thus far no qualitative correlation could be found between Smh polymorphism and chromosome variation described in this superspecies.On leave from the Dept. of Physiology, University of Zagreb, Medical Faculty, Salata 3, Zagreb, Yugoslavia.     

Major histocompatibility complex of the mole-rat

The major histocompatibility complex (Mhc) is a group of loci coding for lymphocyte membrane glycoproteins that provide the context for the recognition of foreign antigens in the initial phase of the immune response. The complex contains a large number of loci, some of which are highly polymorphic. The complexity and polymorphism pose a number of questions concerning the evolution of the Mhc. In an attempt to answer some of these questions, we have begun to study the Mhc of the mole-rat, Spalax ehrenbergi, a rodent representing a complex of sibling species occupying ecologically and geographically clearly delineated regions within the borders of Israel. In an earlier publication we identified the Spalax major histocompatibility (Smh) complex serologically and biochemically. Here, we analyze the Smh by Southern blotting of DNA fragments produced by restriction enzyme digestion. The fragments were hybridized to mouse probes specific for class I, class II, and C4 genes. The analysis has revealed that the Smh complex contains as many class I genes as the mouse does and that these genes are polymorphic. The number of class II genes could not be determined with certainty, but it is probably not greater than in the mouse. Polymorphism was also detected at the loci coding for the complement component 4 (C4), which are probably closely linked to the Smh complex. The polymorphism of mole-rat class I loci contrasts with the reported monomorphism of these loci in the Syrian hamster. Since the mole-rat leads a solitary, subterranean life, as the Syrian hamster does, ecology cannot be an explanation for the lack of class I polymorphism in the latter species.On leave from the Department of Physiology, University of Zagreb Medical Faculty, Zagreb, Yugoslavia.     

Endocranial morphology of Pygoscelis calderensis (Aves,Spheniscidae) from the Neogene of Chile and remarks on brain morphology in modern Pygoscelis

The endocranial anatomy of Pygoscelis calderensis, a fossil species from the Bahía Inglesa Formation (Middle Miocene–Pliocene) of Chile, South America, was described through CT scans. Reconstructions of the fossil P. calderensis and endocasts for the living Pygoscelis adeliae, and Pygoscelis papua are provided here for the first time. Comparisons with the extant congeneric species P. adeliae, Pygoscelisantarctica and P. papua indicate that the morphological pattern of the brain and inner ear of the extant pygoscelids has been present already in the Middle Miocene. The neurological morphology suggests that the paleobiology of the extinct form would have been similar to the extant species. It was probably true for diet, feeding behaviour and diving kinematics.     

Phylogenetic and biogeographic analysis of the spear lobsters Linuparus (Decapoda: Palinuridae), with the description of a new species

Linuparus White, 1847 comprises three extant species, Linuparus trigonus (Von Siebold, 1824), L. sordidusBruce, 1965, and L. somniosusBerry and George, 1972, as well as 32 fossil species. Most fossil records are from North America and Europe, but the extant species are all confined to the Indo-West Pacific. Different colour forms in L. trigonus and L. sordidus have been noted, with Northern Hemisphere specimens generally darker in colour for both species. The phylogenetic relationships of the extant Linuparus species, including the colour forms, were investigated using mitochondrial 12S rRNA and COI gene sequence analysis. We found no genetic evidence to differentiate the colour morphs of L. sordidus, but the two colour forms of L. trigonus were clearly distinct at the species level. This is supported morphologically by a consistent difference in the shape of the thoracic sternum between the two forms. The paler coloured Southern Hemisphere form is described as a new species, L. meridionalis. Phylogenetic analysis shows that L. trigonus and L. meridionalis sp. nov. are derived sister taxa, while L. somniosus is basal within the genus. Thus the present results support the previous hypothesis that Linuparus was originated in shallow water.     

Liaoxia Cao et S.Q. Wu (Gnetales): ephedroids from the Early Cretaceous Yixian Formation in Liaoning, northeastern China

Gnetalean compression-impression fossils are described from the Early Cretaceous Yixian Formation, Liaoning Province, north-eastern China, and assigned to six species of Liaoxia Cao et S.Q. Wu. The fossils have opposite-decussate phyllotaxis and cones comprising 2–12 pairs of bracts. Ovulate cones have seeds typically in a distal position. The species differ from each other and from previously described fossils in the absence or presence of leaves, shape of cones and seeds, and shape and position of cone bracts. The species of Liaoxia are probably close relatives of extant species of Ephedra L., but diagnostic reproductive details that could confirm this hypothesis are not preserved. The restricted information in the fossils and the poorly understood morphological diversity of extant Ephedra, prevent assignment of the fossils to any particular subgroup of Ephedra, as well as an explicit exclusion of them from the extant genus.     

Ctenophthalmus harputus, a new Spalax flea from Turkey

ABSTRACT. Ctenophthalmus harputus sp.n. is described from the mole rat Spalax ehrenbergi Nehring collected near Elaziǧ city in eastern Turkey. This new flea species is classified in the Ctenophthalmus (Palaeo-ctenophthalmus) fissurus Wagner group. A key is given to the six species of Spalax fleas (Siphonaptera: Hystrichopsyllidae, Ctenophthalmus spp.) recorded from Turkey.     

Habitat selection in evolving mole rats

Summary The actively speciating four chromosomal species of fossorial mole rats of the Spalax ehrenbergi complex in Israel (2n=52, 58, 54 and 60) which inhabit an increasingly arid environment in this order were tested to determine their habitat preference. The testing apparatus simulated four climatic regimes based on temperature and humidity combinations corresponding to the climatic origins of the four chromosomal species: coolhumid, cool-dry, warm-humid and warm-dry, respectively. The tests involved 175 adults comprising all four chromosome species and representing 10 populations. Out of the 139 analyzed animals 88% selected the warm cages and only 12% selected the cool cages. The four karyotype progressively preferred the warm-dry cage in the following order: 53, 59, 60 and 72% for 2n=58, 52, 54 and 60 respectively, largely in accord with their increasingly arid climatic origins. Even larger differences were found in populations within karyotypes in accord with the local climatic variation within a karyotype range.The results of our analysis indicate that the chromosomal species and populations select their climatic habitat in accord with the climatic conditions of their geographic localities. The humidity index appears to be the prime differentiator of habitat selection and may have been a substantial ecological factor in species differentiation and distribution of the Spalax ehrenbergi complex in Israel.     

How long can insect species exist? Evidence from extant and fossil Micromalthus beetles (Insecta: Coleoptera)

Six new fossils of Micromalthus (Coleoptera: Archostemata) from Dominican amber are compared with extant and previously described fossil micromalthid beetles. The amber inclusions are well preserved and all important morphological features are visible. Taking into account the morphological variability of the extant species Micromalthus debilis LeConte, 1878 , it is not possible to find any morphological features that distinguish the fossils from the extant species. This also applies to the Dominican amber inclusion described as Micromalthus anasi Perkovsky, 2008, which therefore is considered a junior synonym of M. debilis. The lack of morphological change in M. debilis over time might possibly be explained by unusually stable environmental conditions, as this species occupies a very specialized ecological niche in decaying timber. A general survey of fossil insects indistinguishable from extant species is presented. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 158 , 300–311.     

Comparative study of leaf architecture and cuticles of Nelumbo changchangensis from the Eocene of Hainan Island,China, and the two extant species of Nelumbo (Nelumbonaceae)

Fossil leaves of Nelumbo changchangensis, collected from the Eocene of Hainan Island, China, were studied and compared with those of the extant species of Nelumbo, N. nucifera Gaertn. and N. lutea Willd. The fossil leaves have all the specialized features of extant Nelumbo in leaf architecture, except that the organization of the areolae looks much more irregular than that of extant Nelumbo. Comparisons of the cuticle and epicuticular ultrastructure indicate that: (1) N. changchangensis resembles N. nucifera in that anticlinal cell walls of the lower epidermis are straight along the major veins and near leaf bases and are shallowly undulate with U‐ to V‐shaped undulations inside the areolae; (2) N. changchangensis differs from N. lutea in that anticlinal cell walls of the lower epidermis of the latter are deeply undulate with U‐, V‐ to reversed Ω‐shaped undulations inside the areolae; and (3) epicuticular wax crystals are more densely distributed on the leaves of N. changchangensis and N. nucifera than they are in N. lutea. These findings shed significant light on the cuticle differentiation of fossil and extant Nelumbo species. The morphometric comparisons indicate that almost all the synapomorphies of extant Nelumbo were already present by the Eocene, © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2016, 180 , 123–137.     

Insights on the history of the scorched mussel Brachidontes rodriguezii (Bivalvia: Mytilidae) in the Southwest Atlantic: a geometric morphometrics perspective

Some authors support the idea that an important part of the Miocene marine mollusc fauna is still represented in the Argentinean Province. The fossil mollusc Brachidontes lepida (Philippi) is considered a subspecies of the extant B. rodriguezii (d?Orbigny), a taxon currently present in the Argentinean Biogeographic Province. The aim of this study is to investigate the shell shape relationship between B. lepida and B. rodriguezii using geometric morphometrics. Samples of B. rodriguezii (n = 63) from four localities distributed in Uruguay and Argentina, of B. lepida from the Paraná Formation (n = 26) and of two other extant Brachidontinae present in the region were included in this study. Canonical variate analyses showed that extant species differed in shell shape, with the discriminant function properly allocating 93% of the individuals to their respective species. Using the extant discriminant function, approximate 92% of B. lepida individuals were allocated to B. rodriguezii. This result suggests that B. lepida is more similar in shell shape to B. rodriguezii than to the other extant species present in the region. Considering the material from the Pliocene of Cerro Laciar and from the Pleistocene deposits of Buenos Aires and Bustamante, the presence of B. rodriguezii from the Late Miocene in the warm temperate region is discussed.     

Tsuga shimokawaensis,a new species of permineralized conifer leaves from the Middle Miocene Shimokawa Group,Hokkaido, Japan

Silicified pinaceous leaves from the late Middle Miocene bed of Shimokawa Town, central Hokkaido, Japan are described asTsuga shimokawaensis sp. nov. Comparisons with leaves of extant species ofTsuga show that the new species is assigned to sect.Tsuga, resembling the extant speciesT. heterophylla in having usually one-cell-layered hypodermis, andT. sieboldii in having mesophyll cells between the resin canal and the hypodermis. From cladistic analyses we infer thatTsuga shimokawaensis is positioned the basal in sect.Tsuga and that sect.Tsuga comprises four species groups.     

Adaptation of Pelage Color and Pigment Variations in Israeli Subterranean Blind Mole Rats,Spalax Ehrenbergi

Background

Concealing coloration in rodents is well established. However, only a few studies examined how soil color, pelage color, hair-melanin content, and genetics (i.e., the causal chain) synergize to configure it. This study investigates the causal chain of dorsal coloration in Israeli subterranean blind mole rats, Spalax ehrenbergi.

Methods

We examined pelage coloration of 128 adult animals from 11 populations belonging to four species of Spalax ehrenbergi superspecies (Spalax galili, Spalax golani, Spalax carmeli, and Spalax judaei) and the corresponding coloration of soil samples from the collection sites using a digital colorimeter. Additionally, we quantified hair-melanin contents of 67 animals using HPLC and sequenced the MC1R gene in 68 individuals from all four mole rat species.

Results

Due to high variability of soil colors, the correlation between soil and pelage color coordinates was weak and significant only between soil hue and pelage lightness. Multiple stepwise forward regression revealed that soil lightness was significantly associated with all pelage color variables. Pelage color lightness among the four species increased with the higher southward aridity in accordance to Gloger''s rule (darker in humid habitats and lighter in arid habitats). Darker and lighter pelage colors are associated with darker basalt and terra rossa, and lighter rendzina soils, respectively. Despite soil lightness varying significantly, pelage lightness and eumelanin converged among populations living in similar soil types. Partial sequencing of the MC1R gene identified three allelic variants, two of which were predominant in northern species (S. galili and S. golani), and the third was exclusive to southern species (S. carmeli and S. judaei), which might have caused the differences found in pheomelanin/eumelanin ratio.

Conclusion/Significance

Darker dorsal pelage in darker basalt and terra rossa soils in the north and lighter pelage in rendzina and loess soils in the south reflect the combined results of crypsis and thermoregulatory function following Gloger''s rule.     

On the phylogenetic position and systematics of extant and fossil Aclopinae (Coleoptera: Scarabaeidae)

The Aclopinae is a small subfamily within the family Scarabaeidae. It currently comprises five extant genera with 28 species, and eight fossil genera with 25 species. The systematic position of Aclopinae within the family Scarabaeidae is uncertain, particularly because representative species of Aclopinae have been absent in previous phylogenetic studies. Here we performed phylogenetic analyses using morphological and molecular data to investigate the phylogenetic position of fossil and extant Aclopinae. For this objective, we expanded and revised a former morphological data matrix (composed of 68 characters) including all extant genera of Aclopinae. We complemented our morphological investigations with a molecular phylogenetic analysis based on four genes of several extant taxa of Aclopinae and a wide sample of diverse Scarabaeoidea. Our phylogenetic analyses show that all the type species of the fossil genera formerly included within Aclopinae do not belong within the extant Aclopinae clade and support both the exclusion of those fossil taxa and the monophyly of the extant genera of Aclopinae: Aclopus Erichson, Desertaclopus Ocampo & Mondaca, Gracilaclopus Ocampo & Mondaca, Neophanaeognatha Allsopp and Phanaeognatha Hope. Our results also show that the fossil taxa Prophaenognatha robusta Bai et al. and Ceafornotensis archratiras Woolley are closely related to Ochodaeidae, while the remaining type species of fossils formerly included in Aclopinae (Cretaclopus longipes (Ponomarenko), Holcorobeus vittatus Nikritin, Juraclopus rodhendorfi Nikolajev, Mesaclopus mongolicus (Nikolajev), and Mongolrobeus zherikhini Nikolajev) belong to a distinct lineage closely related to Diphyllostomatidae. Based on these results, the subfamily Aclopinae appears monophyletic and sister to the ‘pleurostict’ lineage. Consequently, we propose the following changes to the current classification of the fossil taxa: Holcorobeus monreali (Gómez‐Pallerola) belongs to Carabidae (incertae sedis) as proposed by the original author, and we place Ceafornotensis Woolley, Cretaclopus Nikolajev, Holcorobeus Nikritin, Juraclopus Nikolajev, Mesaclopus Nikolajev, Mongolrobeus Nikolajev and Prophaenognatha Bai et al. in Scarabaeoidea (incertae sedis). Furthermore, we provide an identification key to, and diagnoses of, the genera, illustrations of diagnostic characters and checklists of their included species. The evolutionary perspective presented provides new insights into the evolution of the pleurostict condition in Scarabaeoidea and the biogeography of this group, which is now regarded as Gondwanan, probably evolving during the Cretaceous and not from the upper Jurassic as previously assumed.     

FOSSIL CERATOPHYLLUM (CERATOPHYLLACEAE) FROM THE TERTIARY OF NORTH AMERICA

Fossil fruits and a vegetative axis assignable to the extant genus Ceratophyllum are described from four North American Tertiary localities. Fossil fruits assignable to the extant species C. muricatum and C. echinatum are reported from the Eocene Green River and Claiborne formations, and the Miocene Esmerelda Formation, respectively. An extinct species, C. furcatispinum, is described from the Paleocene Fort Union Formation and represents the oldest published report of Ceratophyllum in the fossil record. The existence of extant angiosperm species in the Eocene is very unusual and may be attributable in this case to slow evolutionary rates and unusual evolutionary properties associated with hydrophily in the genus Ceratophyllum.     

Characterization of paternity relationships in the mole rat <Emphasis Type="Italic">Spalax ehrenbergi</Emphasis> by microsatellite genotyping

Spalax ehrenbergi is a species complex of blind subterranean rodents distributed along the east Mediterranean region. We studied genetic relationships within and between S. ehrenbergi sib families using microsatellite genotyping. The upper-bound level of multiple-paternity rate in litters was estimated using a simulation model of breeding process. Our results show that the upper bound of multiple paternity in the studied population of S. ehrenbergi is <30% (P value 2.9%), with no detected cases of multiple paternity. Our analytical model was specifically designed for a situation in which the sibling identities are known but genetic data about their parents is unavailable. The genetic similarities between groups of individuals were also tested, and it was found that the distance between breeding nests is a factor influencing the genetic similarity between litters found in the nests.     

Evolution of Philopotinae,with a revision and phylogeny of the New World spider fly genus Philopota Wiedemann (Diptera,Acroceridae)

Philopotinae are hunchbacked spider flies represented by 63 fossil and extant species in 15 genera worldwide. Philopota Wiedemann, 1830, is the most species‐rich genus within the subfamily. Here, the evolution of Philopotinae is discussed, and a revision and phylogeny of Philopota based on adult morphology are presented. Nine of the 12 extant Philopotinae genera were included in our analysis, and 22 species were recognized in Philopota, of which 13 are described as new. Seven new synonymies are proposed. The phylogenetic analysis included 33 terminal taxa (22 ingroup and 11 outgroup species) and used 53 morphological characters, resulting in a single most parsimonious tree under equal weights. The monophyly of Philopota is recovered, and the Palaearctic genus Oligoneura is hypothesized as its sister‐group.     

Hominoid dental variability and species number at the late Miocene site of Lufeng,China

The large hominoid sample from the late Miocene site of Lufeng, China, has been variously claimed to contain either one or two species, but very few metric data in support of either position have been published. We calculate coefficients of variation for the dental remains both for the two presumed species and for the pooled sample as a whole using the summary statistics published by Wu & Oxnard (Wu & Oxnard: American Journal of Primatology 5:303–344, 1983a, Nature 306:258–260, 1983b). These are compared to the same measures of single-sex and combined-sex samples of extant hominoids. We also present metric characterizations of male and female canines of extant great apes, with which we evaluate the gender composition of the Lufeng canine sample. In a two-species alternative, the two presumed species have measures of variability and canine representation that are more compatible with single-sex samples representing males and females, respectively. The pooled dental sample has measures of variability within the ranges of single species of extant great apes. We conclude there is a single large hominoid species represented at Lufeng that is highly sexually dimorphic. The phylogenetic relationships of this species are briefly considered. It is generally primitive in craniodental morhpology and is unlikely to be a member of the Sivapithecus-Pongo clade.     

Phylogenetic topology and timing of New Zealand olive shells are consistent with punctuated equilibrium

The olive shells of the genus Amalda comprises readily recognized species of marine neogastropod mollusks found around the world. The New Zealand Amalda fauna has particular notoriety as providing one of the best demonstrations of evolutionary morphological stasis, a prerequisite for punctuated equilibrium theory. An excellent fossil record includes representation of three extant endemic Amalda species used to explore patterns of form change. However, the phylogenetic relationship of the New Zealand Amalda species and the timing of their lineage splitting have not been studied, even though these would provide valuable evidence to test predictions of punctuated equilibrium. Here, we use entire mitogenome and long nuclear rRNA gene cassette data from 11 Amalda species, selected from New Zealand and around the world in light of high rates of endemicity among extant and fossil Amalda. Our inferred phylogenies do not refute the hypothesis that New Zealand Amalda are a natural monophyletic group and therefore an appropriate example of morphological stasis. Furthermore, estimates of the timing of cladogenesis from the molecular data for the New Zealand group are compatible with the fossil record for extant species and consistent with expectations of punctuated equilibrium.     

Ancient DNA from an extinct Mediterranean micromammal—Hypnomys morpheus (Rodentia: Gliridae)—Provides insight into the biogeographic history of insular dormice

The dormice (Gliridae) are a family of rodents represented by relatively few extant species, though the family was much more species-rich during the Early Miocene. Intergeneric phylogenetic relationships among glirids in some cases remain unresolved, despite extensive molecular and morphological analyses. Uncertainty is greatest with respect to the relationships among fossil taxa and how extinct lineages are related to modern species. The fossil genus Hypnomys from the Balearic Islands (western Mediterranean Sea) includes the Late Pleistocene–Holocene species Hypnomys morpheus, which has variously been considered a close relative or subgenus of the extant Eliomys. In the present study, we sequenced ancient mitochondrial DNA from H. morpheus, which suggests a sister relationship with the extant members of Eliomys. In addition, the pairwise sequence variation between Hypnomys and Eliomys is higher than that observed between congeneric glirid species (e.g., many Graphiurus spp.), which allows us to reject the hypothesis that Hypnomys is a subgenus of Eliomys. Our molecular dating analyses suggest that Hypnomys and Eliomys diverged 13.67 million years ago (95% highest posterior density [HPD] = 7.39–20.07). The relatively early split between these genera together with the molar morphology of early representatives of Hypnomys points to a Middle-Late Miocene origin from a continental glirid with a complex molar pattern, such as Vasseuromys or a closely related genus.