Cytogenetical approaches to the problem of form-formation and subspeciation in the complex Lacerta (Zootoca) vivipara (Lacertidae, Sauria)

Results of the author's long-term study of the karyotype of Lacerta (Zootoca) vivipara (family Lacertidae, Sauria) have been generalized and supplemented with relevant literature data. Within the species an interpopular karyotype variability was established, and several chromosomal forms were described. Karyotypes of L. (Z.) vivipara from four new, previously not examined populations have been first presented in this paper, and cytogenetical features of their chromosomes are given. Finally, cytogenetical analysis of particular specimens from different localities enabled the author to reveal a new chromosomal form and to define the limits of distribution of other forms of the species. The complex L. (Z.) vivipara has appeared to be more complicated than earlier believed. This complex includes several chromosomal forms of unclear taxonomic status, and some subspecies characterized by various modes of reproduction and distinct distribution ranges. It has been confirmed that in the complex L. (Z.) vivipara intensive chromosomal changes accompany the processes of form-formation and subspeciation. Some cytogenetical regularities of these processes have been demonstrated and compared with hybridogeneous form-formation and speciation. Based on the critical analysis of the available karyological data, some mechanisms of chromosomal changes were described, and their tendencies were determined. In addition, intraspecific relationships were analysed. The proposed scheme was compared with the pattern of intraspecific phylogeny of L. (Z.) vivipara based on molecular data. It has been shown that a high cytogenetical differentiation of the found chromosomal forms and subspecies is correlated with their low morphological differentiation and with a rather low genetical differentiation. The results of the combined analysis suggest the leading role of cytogenetical data for understanding the processes of form-formation and subspeciation. The importance of chromosomal rearrangements in these processes is emphasized, with special reference to their role in the evolution and phylogeny of the complex L. (Z.) vivipara. Some modes of form-formation and subspeciation in this complex are discussed.     

Molecular genetic analysis of soriz genome (Sorghum oryzoidum)

Molecular-genetic analysis of soriz genotypes (Sorghum oryzoidum), its paternal form Sorghum bicolor (L.) Moench (grain sorghum), possible parents (Sorghum sudanense (Piper.) Stapf. (Sudan grass) and Oryza sativa L. (rice planting)) and the nearest relatives has been carried out using microsatellite (MS) loci of sorghum and rice. Based on these data genetic distances have been calculated. It was shown that soriz do not bear DNA fragments of rice, but contains in its genome DNA fragments belonging to the Sudanese grass indicating that the origin of soriz is associated with Sorghum sudanense.     

A review of the genus Semele (Ruscaceae) systematics in Madeira

The present study attempts to review the systematics of Semele (Ruscaceae) in Madeira, based on phenotypic diversity. The variation in some vegetative (climbing shoot, second-order branches or 'phylloclades') and sexual (inflorescence and flowers) characters was analysed in 115 plant specimens from 30 field populations, herbaria of the Costa collection and Madeira Botanical Garden (MADJ) and certain gardens. Thirty-one quantitative and qualitative characters have been utilized in the analysis. Kaiser–Meyer–Olkin (KMO) analysis indicates adequate sampling. Principal component analysis (PCA) reveals that the spatial distribution of individuals has a discontinuous behaviour. Principal coordinate analysis (PCO) utilizing the Gower coefficient on standardized data revealed a significantly discontinuous distribution of individuals, such that two different clusters can be defined. The Student's t -test and Tukey test on separate characters, when individuals were classified according to the Costa classification, confirms the significant differences between grouping accessions. This leads to the recognition of two species within the genus in Madeira. Literature and herbarium studies show that these two taxa are conspecific with Semele androgyna (L.) Kunth sensu stricto (s.s.) and Semele menezesi Costa sensu lato (s.l.) . A separated statistical analysis of the S. androgyna cluster shows the possible existence of additional subgroups. Based on field population distribution, ecological behaviour and variation in features, we propose the recognition of two species, S. androgyna (L.) Kunth and S. menezesi (Costa) Pinheiro de Carvalho, and two subspecies S. androgyna (L.) Kunth androgyna Pinheiro de Carvalho and S. androgyna (L.) Kunth pterygophora Pinheiro de Carvalho.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 483–497.     

Spirorbinae (Polychaeta:Serpulidae) from Chios (Aegean Sea)

Twelve species are described, of which two are new, viz. Spirorbis (Janua) gnomonicus and Spirorbis (J.) parvulus, and three others have been recognized only very recently, viz. S. (Pileolaria) clavus, S. (P.) endoumensis, S. (P.) heteropoma. Some such as 5. (jf.) corrugatus and S. (P.) koehleri were widely distributed between depths of 0–60 m, but others showed a tendency towards depth zonation, with S.(J.)pagenstecheri abundant in shallow and S. (Spirorbis) cuneatus in somewhat less shallow water. 5. (P.) pseudomilitaris and S. (Marsipospira) striatus were confined to greater depths except where the former occurred amongst ships fouling and the latter in a dark cave. 5. (P.) militaris seems rather uncommon.
A remarkably high percentage of the species (over 80%) are opercular incubators. Outside the Mediterranean, the only areas known to have similar percentages are Ceylon and the West Indies, suggesting that the habit may have originated in the Sea of Tethys.     

Morphological and genetic differentiation of two loliginid squids, Uroteuthis (Photololigo) chinensis and Uroteuthis (Photololigo) edulis (Cephalopoda: Loliginidae), in Asia

The squids Uroteuthis (Photololigo) edulis and Uroteuthis (Photololigo) chinensis (family Loliginidae) are commercially important fishery species in many coastal regions of Asia. The morphologies of these two squids are very similar, and identification based on morphology has been inadequate. The occurrence of cryptic species in the family Loliginidae has been reported. The widely distributed U. (P.) chinensis and U. (P.) edulis are believed to comprise several cryptic species. In this study, the taxonomic status of the two species in East Asia was elucidated by morphological and genetic analyses. Analysis of U. (P.) chinensis from Hong Kong and Xiamen (China) and U. (P.) edulis from Yamaguchi (Japan) and Shanghai (China) was performed in order to determine the effectiveness of different morphometric variables in discriminating between the two species. Multivariate analysis of 27 morphometric indices revealed no new morphological characters for the taxonomic identification of the two taxa, which can be distinguished by the teeth shape and number on arm sucker rings, and the percentage of hectocotylized part of left arm IV of males. The morphometric differences between U. (P.) edulis individuals from the two localities is most probably due to differences in the maturity stages of the sampled individuals between the two localities. Genetic analysis based on the mitochondrial COI and 16S rRNA genes revealed a high divergence of 15.5% and 7.5% respectively, indicating that U. (P.) edulis and U. (P.) chinensis are distinct species.     

Comparative genomic analysis of Leishmania (Viannia) peruviana and Leishmania (Viannia) braziliensis

Background

The Leishmania (Viannia) braziliensis complex is responsible for most cases of New World tegumentary leishmaniasis. This complex includes two closely related species but with different geographic distribution and disease phenotypes, L. (V.) peruviana and L. (V.) braziliensis. However, the genetic basis of these differences is not well understood and the status of L. (V.) peruviana as distinct species has been questioned by some.Here we sequenced the genomes of two L. (V.) peruviana isolates (LEM1537 and PAB-4377) using Illumina high throughput sequencing and performed comparative analyses against the L. (V.) braziliensis M2904 reference genome. Comparisons were focused on the detection of Single Nucleotide Polymorphisms (SNPs), insertions and deletions (INDELs), aneuploidy and gene copy number variations.

Results

We found 94,070 variants shared by both L. (V.) peruviana isolates (144,079 in PAB-4377 and 136,946 in LEM1537) against the L. (V.) braziliensis M2904 reference genome while only 26,853 variants separated both L. (V.) peruviana genomes.Analysis in coding sequences detected 26,750 SNPs and 1,513 indels shared by both L. (V.) peruviana isolates against L. (V.) braziliensis M2904 and revealed two L. (V.) braziliensis pseudogenes that are likely to have coding potential in L. (V.) peruviana. Chromosomal read density and allele frequency profiling showed a heterogeneous pattern of aneuploidy with an overall disomic tendency in both L. (V.) peruviana isolates, in contrast with a trisomic pattern in the L. (V.) braziliensis M2904 reference.Read depth analysis allowed us to detect more than 368 gene expansions and 14 expanded gene arrays in L. (V.) peruviana, and the likely absence of expanded amastin gene arrays.

Conclusions

The greater numbers of interspecific SNP/indel differences between L. (V.) peruviana and L. (V.) braziliensis and the presence of different gene and chromosome copy number variations support the classification of both organisms as closely related but distinct species.The extensive nucleotide polymorphisms and differences in gene and chromosome copy numbers in L. (V.) peruviana suggests the possibility that these may contribute to some of the unique features of its biology, including a lower pathology and lack of mucosal development.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1928-z) contains supplementary material, which is available to authorized users.     

Neocrassinid bivalves (Heterodonta) from the Middle Bathonian (Jurassic) of Kachchh,Western India

Six bivalve taxa belonging to the genusNeocrassina Fischer have been described from Middle Bathonian (Middle Jurassic) rocks of Kachchh, Western India. Of these,Neocrassina (N.) ovata (Smith), TV.(N.) robusta (Etallon) andN. (N.) paphia (d?Orbigny) have been recorded previously from various parts of Europe, whileNeocrassina (N.) pandeyi Maithani is an endemic faunal element as areNeocrassina (N.) sp. A andNeocrassina (N.) sp. B. The generic and sub-generic characters ofNeocrassina are reviewed as are affinities of the taxa with closely related forms from India and other parts of the world.     

Micromorphology of Scirpus (Cyperaceae) and related genera in south-west Europe

Glume surface, fruit surface, perianth bristles and pollen morphology in Scirpus L. and related genera from south-west Europe have been investigated by light and scanning electron microscopy. The results of this analysis confirm the heterogeneity of the group and provide further support to the current recognition of the genera Scirpus L., Bolboschoenus (Rchb.) Palla , Scirpoides Ség., Schoenoplectus (Rchb.) Palla, Isolepis R.Br., Trichophorum Pers. and Blysmus Panz. as well as to a re-appraisal of subg. Actaeogeton (Rchb.) Oteng-Yeb. of Schoenoplectus .  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 145 , 45–58.     

Anatomy of the Muhlenbergia Montana complex (Poaceae)

Leaf anatomical data from 13 taxa of the Muhlenbergia montana complex were surveyed, and 18 critical characters were found. Results obtained from the phenetic analysis of anatomical data have given independent data to compare with the morphological, phytogeographical, and flavonoid data (previously reported) in determining the relationships of the species. An anatomical dendogram illustrates a close corroboration. Leaf anatomy clearly supports the recognition of a close relationship among the two taxa — M. virescens and M. quadridentata—as has been suggested in previous reports. Therefore, a change of level is suggested in which M. quadridentata (H.B.K.) Kunth is proposed here as M. virescens (H.B.K.) Kunth ssp. quadridentata (H.B.K.) Herrera (comb. nov.).     

不同地理种群小菜蛾的遗传多样性分析

采用水平切片淀粉凝胶电泳方法,分析了北京、河北、云南和武汉4个不同地理种群的小菜蛾的等位酶,得到了3个酶系统（甘油醛磷酸脱氢酶（GPD）、苹果酸酶（ME）和苹果酸脱氢酶（MDH-1,MDH-2和MDH-3）5个基因位点的资料。用Biosys2.0软件计算了不同地理种群的遗传变异指标（N、A、P、H0和He）,结果表明小菜蛾各种群内的基因多样性大于各种种群间的基因多样性（约15倍）,武汉种群小菜蛾的遗传性最大。并计算了遗传距离D和相似性系数,并由此得出聚类图,分析了小菜蛾不同地理种群间的遗传关系。     

Two new records of Oribatula (Zygoribatula) species (Acari: Oribatida) from Turkey, with redescriptions

The oribatid mite fauna of Turkey is still relatively poorly known. The present paper adds two species of oribatid mites to the known Turkish fauna viz., Oribatula (Zygoribatula) debilitranslamellata (Kulijev, 1962) and O. (Z.) exilis (Nicolet, 1855). Both species are characterised by large, prominent lamellar cusps, with the lamellar setae inserted apically on the cusps, and by the presence of distinct translamellae. They can be distinguished, however, by the smaller lamellae, absence of cuspidal teeth, narrowly fusiform sensilli and, 13 pairs of thin, smooth, apically almost flagellate notogastral setae, in O. (Z.) debilitranslamellata, and by the wider lamellae, presence of cuspidal teeth, widely fusiform sensilli, and 14 pairs of thin, smooth notogastral setae, with seta c (1) slightly thicker and minutely barbed in O. (Z.) exilis. The following species have been previously reported from Turkey: O. (Z.) cognata (Oudemans, 1902), O. (Z.) undulata (Berlese, 1917), O. (Z.) terricola Van der Hammen, 1952, and O. (Z.) lanceolata Grobler, Bayram & Cobanoglu, 2004.     

Comparative zymographic analysis of metallopeptidase of Leishmania (Viannia) peruviana and Leishmania (Viannia) braziliensis isolates from Peru

American tegumentary leishmaniasis (ATL) in Peru is mainly associated with Leishmania (Viannia) peruviana and L. (V.) braziliensis. These parasites are genetically related, and their characterization as distinct species is controversial. Despite their genetic similarity, each species is associated with different clinical manifestations of ATL; L. (V.) peruviana causes only cutaneous leishmaniasis, whereas L. (V.) braziliensis can cause both cutaneous and mucocutaneous leishmaniasis. Because the primary cutaneous lesions caused by infection with these species are indistinguishable, it is necessary to develop a suitable method to differentiate them in order to prevent possible metastasis to oropharyngeal mucosa. In the present study, we investigated the proteolytic profile of L. (V.) peruviana and L. (V.) braziliensis isolates from Peru by zymographic analysis in SDS-PAGE copolymerized with gelatin. Enzymes were characterized according to their pH range of activity and sensitivity to distinct peptidase inhibitors. We observed that L. (V.) peruviana isolates displayed three proteolytic bands with molecular masses ranging from 55 to 80kDa, whereas L. (V.) braziliensis isolates showed six proteolytic activities between 55 and 130kDa. Using specific inhibitors, we determined that these proteolytic activities are due to metallopeptidases and present optimal activity between the pH range 5.5 and 10.0. Our results suggest that the expression of metallopeptidases in L. (V.) peruviana and L. (V.) braziliensis isolates from Peru is species-specific.     

Selective site segregation in Patelloida (Chiazamea) Pygmaea (Dunker) and P.(C.) Lampanicola Habe (gastropoda: Patellacea) on a Hong Kong shore

Although originally described as a separate species, Patelloida (Chiazacmea) lampanicola Habe has subsequently been regarded as a “form” of P. (C.) pygmaea (Dunker). The conical shape of the shell in the former was assumed to result from the settlement and growth of some individuals of the population upon shells of intertidal Batillaria (Potamididae).This paper reports upon an analysis of a population of limpets resident on a small sand flat in Hong Kong and it is concluded that Patelloida (C.) lampanicola is distinct from P. (C.) pygmaea. This conclusion is based upon differences in radula teeth structure, shell morphometrics and behaviour. Furthermore it has been demonstrated that the earlier confusion surrounding these species results from a very nice example of selective site segregation. P. (C.) pygmaea inhabits stones and empty shells (in this region of its total range) embedded in the sand but can occasionally does reside, up to a length of 4.2 mm, upon Batillaria shells. Thereafter the flattened form of the limpet shell, on a round substratum, presumably makes such individuals more susceptible to either predation or dislodgement. The high-coned Patelloida (C.) lampanicola, on the other hand, almost exclusively colonizes living Batillaria (particularly B. zonalis and B. multiformis) shells but can, with little or no significant alteration in form, also colonize stones. Patelloida (C.) lampanicola has a positive behavioural response towards Batillaria and is clearly living in symbiotic association with the potamid. The benefits accrued by both are discussed.Thus, the limited hard substratum of a primarily soft shore environment has been segregated by these two limpets; one occupies the stones and oyster shells, the other the dense cover of epifaunal potamid snails.     

Morphological, allozymic, and karyotypic distinctions between Neritina (Dostia) violacea and N. (D.) cornucopia (Gastropoda: Neritoidea)

Two species of mangrove gastropod, Neritina (Dostia) violacea Gmelin, 1791 and N. (D.) cornucopia Benson, 1836, from Hong Kong have been compared morphologically, allozymically, and karyotypically. The two can be identified by differences in shell pigmentation patterns, ventral shell characters, and radular teeth characters. Allozymic variations at 15 presumptive gene loci were examined. Average heterozygosities were 0.058 in local populations of N. (D.) violacea and 0.138 in N. (D.) cornucopia. Six enzyme encoding loci were typically diagnostic for individuals of each species and no hybrid patterns have been recorded. Nei's standard genetic distance and genetic identity between the two species were estimated to be 0.814 and 0.443, respectively. Karyotypic investigations have revealed that both species are diplonts, with two X-chromosomes in females and one in males. Diploid numbers are 2n = 20 + XX (or XO) for N. (D.) violacea and 2n = 26 + XX (or XO) for N. (D.) cornucopia.     

First report of Siphonaptera infesting Microtus (Microtus) cabrerae (Rodentia-Muridae-Arvicolinae) in Cuenca,Spain and notes about the morphologic variability of Ctenophthalmus (Ctenophthalmus) apertus personatus (Insecta-Siphonaptera-Ctenophthalmidae)

The fleas infesting Microtus (Microtus) cabrerae from three different areas of Cuenca province (Spain) have been studied. It is the first time that on ectoparasitological study of this badly known rodent has been done. Four Siphonaptera species have been detected: Rhadinopsylla (Actenophthalmus) pentacantha, Peromyscopsylla spectabilis spectabilis, Nosopsyllus fasciatus and Ctenophthalmus (Ctenophthalmus) apertus personatus, which was the most abundant species (26 males and 31 females of a total of 28 males and 35 females). Considering the great morphologic variability within the male processus basimerus ventralis (p.b.v.) of segment IX of C. personatus subspecies, three morphotypes have been recognised. The male polymorphism detected, would be the result of both host confinement and genetic selection acting on the parasite. It should be pointed out that C. (C.) apertus personatus is not narrowly host-specific, therefore further studies are required to clarify this taxonomic situation.     

Morphological evolution and phylogenetic relationships of the European ground voles (Arvicolidae, Rodentia)

Brunet-Lecomte, P. & Chaline, J. 1991 01 15: Morphological evolution and phylogcnctic relationships of the European ground voles (Arvicolidae. Rodentia). Lethaia. Vol. 24. pp. 45–53. Oslo. ISSN 0024–1164. A new morphological study of the first lower molar M₁ of European Quaternary ground voles (Arvicolidac. Rodcntia. Microtus (Terricola)) by means of multivariate analysis renews the systematics. phylogenetic relationships and their evolutionary group history. An Allophaiomyan origin of ground voles has been confirmed and the evolution of Mediterranean and middle Europcan groups has now been clarified. Primitive species of middle European groups display plesiomorphics. except for M. (T.) arvalidens, which shows certain apomorphies of the present species. The occurrence of M. (T.) multiplex in France at the end of the middle Pleistocene before the appearance of M. (T.) suhterraneus completely reverses previous ideas which considered that M. (T.) multiplex was a sibling species derived from M. (T.) subterraneus during the Würmian glaciation. The Atlantic species M. (T.) pyrenaicus is probably derived from the middle Pleistocene species M. (T.) mariaclaudiue whose exact origin is unknown. M. (T.) sauii, M. (T.) tarentina. M. (T.) melirensis and M. (T.) henseli belong to the same geographic group. Perhaps M. (T.) savii derived from M. (T.) tarentina or shares the same ancestor with M. (T.) tarentina. M. (T.) duodecimcostarus probably indirectly derived from an Iberian specics of Allophuiomys such as A. chalinei, while M. (T.) lusitanicus was separated from M. (T.) duodecimcostutus about 60,000 years ago. A sketch of the stratigraphical records and geographical distribution of the Terricola species in Western Europe showing their phylogenetic relationships and migrations during the middle and upper Pleistocene is included. Morphometry, variance analysis, phylogeneric relationships. Mammalia. Rodentia. Arvicolidae. Microtus, Terricola.     

Two new species of African Haemaphysalis ticks (Acari: Ixodidae), carnivore parasites of the H. (Rhipistoma) leachi group

Two new tick species belonging to the African Haemaphysalis (Rhipistoma) leachi subgroup, namely H. (R.) colesbergensis n. sp. and H. (R.) oliveri n. sp., are described. Haemaphysalis (R.) colesbergensis adults are easily differentiated from the other species of the H. (R.) leachi subgroup, including H. (R.) oliveri, by the spur on coxa IV, which is considerably longer than that on coxa III. The adults of the 2 new species are equal in size, but the dental formula of the hypostome of H. (R.) colesbergensis is 4/4 compared to 5/5 for H. (R.) oliveri. The dental formula of H. (R.) oliveri also distinguishes it from other ticks in the subgroup, namely H. (R.) leachi, H. (R.) elliptica, H. (R.) moreli, and H. (R.) punctaleachi (4/4 in these species), but not from H. (R.) paraleachi, which has a 5/5 dental arrangement. However, the average total length and width of H. (R.) oliveri males (2.47 x 1.20 mm) are considerably shorter and narrower than those of H. (R.) paraleachi males (3.81 x 1.79 mm). Similar differences in size apply to the females. Nymphs and larvae of H. (R.) colesbergensis and H. (R.) oliveri can be distinguished from those of other members of the H. (R.) leachi subgroup, as well as from each other, by a combination of the following characters: size and measurement ratios, length of posterodorsal and posteroventral spurs on palpal segment II, and number of denticles per file on the hypostome. Haemaphysalis (R.) colesbergensis is known only from South Africa, where it has been collected from domestic cats and dogs and medium-sized wild felids. Haemaphysalis (R.) oliveri is recorded only from Sudan, where it has been collected from small- to medium-sized wild felids and canids and an antelope. The hosts of the immature stages of H. (R.) colesbergensis are unknown, while nymphs of H. (R.) oliveri have been collected from rodents.     

ON THE EXPERIMENTAL SUSCEPTIBILITY OF SOME HYGROMIINAE (MOLLUSCA, STYLOMMATOPHORA) SPECIES, AS INTERMEDIATE HOSTS OF NEOSTRONGYLUS LINEARIS(NEMATODA, PROTOSTRONGYLIDAE)

The experimental susceptibility of Portugala inchoata, Euomphalia(M.) brigantina, Ponentina ponentina, Hygromia (P.) cantabricacantabrica and Hygromia (P.) cantabrica covadongae to Neostrongyluslinearis larvae were studied for the first rime. The total numberof molluscs used in the infections was 207 and they were killedin series between day 6 and SO post-infection. In order to definethe suitability of the molluscs as intermediate hosts for thisparasite, the number of L-I that penetrated the foot and developedto L-I, L-Il and L-III has been taken into account, as wellas the first days on which the different stages were observed One way analysis of variance showed statistically significantdifferences for the penetration and development of the larvaeamong the species of molluscs examined Statistically significant differences concerning the susceptibilityof the adult and young examples of P. inchoata and E. (M.) brigantinato N. linearis were confirmed by using the chi-square test The most susceptible species of molluscs to N. linearis usingexperimental infections were in decreasing order: P. inchoata,E.(M.) brigantina, H. (P.). caniabrica covadongae, P. ponentinaand H. (P.) caniabrica cantabric ^*This work was supported, in partt, by both the C.A.I.C.Y.T.(Project number 142/83) and C.S.I.C. (211) (Received 12 March 1987;     

The biogeography of grasses (Poaceae)

The grasses are the most important plant family for food production. Despite the domestication of Oryza sativa L. (rice), Triticum aestivum L. (wheat), Zea mays L. (corn), Hordeum vulgare L.(barely), Secale cereale L. (rye), Avena sativa L. (oats), Sorghum bicolor (L.) Moench (sorghum), Saacharum officinarum L. (sugar cane), Pennisetum glaucum (L.) R. Br. (pearl millet), Panicum virgatum L. (switchgrass), Eleusine coracana (L.) Gaertn (finger millet.) and Eragrostis tef (Zucc.) Trotter (tef), the family has not been widely studied biogeographically (Bouchenak-Khelladi et al.,2010). Other notable economic uses of grasses include landscaping, construction (primarily bamboos), and biofuel production (Miscanthus x giganteus J.M. Greef & Deuter ex Hodk. & Renvoize, Panicum L., and Zea L.).