Marine isolate Citricoccus sp. KMM 3890 as a source of a cyclic siderophore nocardamine with antitumor activity

A novel actinobacterium, designated KMM 3890 was isolated from a bottom sediment sample collected from the Sakhalin shallow environment. Phylogenetic analysis based on 16S rRNA gene sequences demonstrated strain KMM 3890 affiliation to the genus Citricoccus. In addition to its hemolytic activity, this strain exhibited inhibitory activity against Gram-positive bacteria. It was found that the marine isolate Citricoccus sp. KMM 3890 produced and excreted into the culture medium a large amount of the compound, which was isolated and structurally characterized as known cyclic siderophore nocardamine on the basis of combined spectral analyses. Nocardamine showed inhibitory effects to colony formation of T-47D, SK-Mel-5, SK-Mel-28 and PRMI-7951 tumor cell lines and a weak antimicrobial against Gram-positive bacteria and no revealed cytotoxic activity. This study can be considered as the first report on marine isolate of the genus Citricoccus producing nocardamine with antitumor activity.     

Description of Citricoccus nitrophenolicus sp. nov., a para-nitrophenol degrading actinobacterium isolated from a wastewater treatment plant and emended description of the genus Citricoccus Altenburger et al. 2002

A novel actinobacterium, designated PNP1(T), was isolated from a wastewater treatment plant at a pesticide factory by selective enrichment with para-nitrophenol. The strictly aerobic strain PNP1(T) grew with para-nitrophenol as the sole carbon and energy source. Metabolism of para-nitrophenol resulted in the stoichiometric release of nitrite. When incubated with both para-nitrophenol and acetate, para-nitrophenol was degraded and utilized as growth substrate prior to acetate. When grown on acetate (in the absence of ammonium) both nitrite and nitrate served as nitrogen sources, nitrate being quantitatively reduced to nitrite which accumulated in cultures during aerobic growth. Cells were coccoid and stained Gram-positive, were non-motile and did not form endospores. Colonies of strain PNP1(T) on agar medium were bright yellow, circular and smooth. The dominant menaquinone was MK-8(H(2)) (54%) and the major cellular fatty acid was anteiso C15:0 (75%). Strain PNP1(T) grew optimally at 27°C, at pH 8-8.5, at salinities 3% (w/v) NaCl, yet exhibited a substantial halotolerance with growth occurring at salinities up to 17% (w/v) NaCl. In addition to para-nitrophenol, a range of sugars, short chain fatty acids and alcohols served as electron donors for growth. The DNA G + C mol% was 68%. The genotypic and phenotypic properties suggest that strain PNP1(T) represents a novel species of the actinobacterial genus Citricoccus for which the name Citricoccus nitrophenolicus is proposed. It is the first member of this genus that has been reported to hydrolyze and grow on para-nitrophenol. The type strain is PNP1(T) (=DSM 23311(T) = CCUG 59571(T)).     

银莲花属植物的化学及药理研究概况

本文简要综述了银莲花属植物的化学和药理研究。迄今已有多被银莲花等10余种该属植物的化学成分和药理活性研究报道,共分离鉴定了抗癌活性成分竹节香附素A等以三萜皂苷为主的近100个化学成分,其中约50个为从该属植物中首先发现的新化合物。     

Chemical Constituents of Plants from the Genus Ixora

Ixora is a genus of ca. 400 species in the family Rubiaceae. Since the 1940s, eighty‐one compounds including phenolics, peptides, terpenoids, and sterols have been isolated from six species of the genus Ixora. Pharmacological studies have shown that these compounds and extracts from the Ixora genus have extensive activities, such as antitumor, chemoprotective, and antioxidant activities. In this review, we summarize the phytochemical progress and list the compounds isolated from the genus Ixora. The biological activities of this genus are also covered.     

Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium

Members of the genus Blastococcus have been isolated from sandstone monuments, as well as from sea, soil, plant, and snow samples. We report here the genome sequence of a member of this genus, Blastococcus saxobsidens strain DD2, isolated from below the surface of a Sardinian wall calcarenite stone sample.     

Bioactivity of the compounds in genus Dysoxylum

The genus Dysoxylum is a large genus comprising of about a dozen species, distributed in India. This is the genus which is rich in compounds like terpenoids and alkaloids. The isolated compounds from the genus were reported to have interesting biological activities. This review contains the chemical structures, along with their biological activities reported in the literature.     

新疆北部地区常见植物根围的丛枝菌根真菌

从新疆北部地区24种常见植物根围土壤中分离并鉴定出5属27种丛枝菌根真菌,其中球囊霉属Glomus15种,无梗囊霉属Acaulospora9种,原囊霉属Archaeospora1种,内养囊霉属Entrophospora1种,巨孢囊霉属Gigaspora1种。道氏球囊霉Glomusdominikii是新记录种。     

Review Article Number 138: Constituents of the yew trees

Yew trees, taxonomically classified under the genus Taxus, are sources of a number of physiologically active compounds of different classes. Taxane derivatives with various carbon skeletons, lignans, flavonoids, steroids and sugar derivatives have been isolated from different Taxus species. Compounds isolated from the genus Taxus between 1908 and December 1997 have been comprehensively reviewed.     

Ethnobotany, chemistry, and biological activities of the genus Tithonia (Asteraceae)

The genus Tithonia is an important source of diverse natural products, particularly sesquiterpene lactones, diterpenes, and flavonoids. The collected information in this review attempts to summarize the recent developments in the ethnobotany, biological activities, and secondary metabolite chemistry of this genus. More than 100 structures of natural products from Tithonia are reported in this review. The species that has been most investigated in this genus is T. diversifolia, from which ca. 150 compounds were isolated. Biological studies are described to evaluate the anti-inflammatory, analgesic, antimalarial, antiviral, antidiabetic, antidiarrhoeal, antimicrobial, antispasmodic, vasorelaxant, cancer-chemopreventive, cytotoxic, toxicological, bioinsecticide, and repellent activities. A few of these studies have been carried out with isolated compounds from Tithonia species, but the majority has been conducted with different extracts. The relationship between the biological activity and the toxicity of compounds isolated from the plants of this genus as well as T. diversifolia extracts still remains unclear, and mechanisms of action remain to be determined.     

紫菀属化学成分及药理活性研究进展

紫菀属所含化学成分主要是三萜皂甙 ,此外还含其它萜类、肽类、香豆素、甾醇等 ;其中一些成分具有抗瘤 ,抗菌 ,消炎等活性。本文对其近 2 0多年来国内外学者分离到的化学成分及其药理活性的研究结果作一综述 ,为该属植物资源的进一步研究和开发提供参考。     

拟孢囊菌属放线菌的研究进展

拟孢囊菌属(Kibdelosporangium)是一个经典的丝状放线菌类群。自Shearer等于1986年建立该属以来,不断有新的菌株从不同生境中被纯培养分离得到,目前已有效发表8个种、2个亚种。拟孢囊菌属作为稀有放线菌属,是获得新型抗生素类次生代谢产物的重要资源。本文结合我们分离到的一株该属菌株的功能研究、基因组分析和相关文献资料,系统综述了拟孢囊菌属放线菌的建立、分类学特征、属内种的分布、活性次级代谢产物的发现以及其他功能应用和开发前景,以期为该属其他新分离菌株的分类鉴定、新颖次级代谢产物的发现、功能基因资源的挖掘与开发提供借鉴。     

Tetraprenyltoluquinols from the brown alga Cystophora fibrosa

Six cyclised tetraprenyltoluquinols and five stereoisomers with the previously reported amentol skeleton have been isolated from the lipophilic extract of the South African brown alga Cystophora fibrosa. Structures and relative stereochemistry were determined using spectrometric techniques, particularly 1D and 2D NMR, and molecular modelling experiments. The compounds isolated appear to be enantiomeric to compounds with the same skeleton isolated from brown algae of the genus Cystoseira collected in northern Africa and the Mediterranean Sea. The isolation of tetraprenyltoluquinols with the amentol skeleton from this alga suggests that C. fibrosa should be moved from the genus Cystophora into the Cystoseira.     

Bacterial Canker of Sweet Cherry (Prunus avium) in Poland

In Polish climatic conditions cherry cankers resulting from infection by Pseudomonas morsprunorum continue development in summer, but the rate may be slower than in the period from April to June. However, from the well established, active canker developing under the dwarf shoot of the susceptible variety‘Hedelfińska’in July no P. morsprunorum were isolated. On the other hand, numerous strains of the genus Erwinia were found there which caused a hyper sensitivity reaction (HR) on tobacco leaves. From the cracks on the current-year cherry shoots, due to fresh infection and from symptomless leaves P. morsprunorum strains were isolated, always accompanied by those of the Erwinia genus in the approximate proportion 1: 1 or 1:2. The strains of Erwinia genus seemed similar to the DC and YC strains isolated by BILLING and BAKER from pear and apple trees infected by fireblight and also to the strains in group III of the bacteria isolated by CROSSE from cherry leaves. In two tests (immediately after isolation and after 4 months of storage) the strains of the Erwinia genus and 3 nonidentified isolates induced HR. At a third test, after 10 months of preservation these strains were HR-negative in contrast to the P. morsprunorum isolates. The fact that strains of the Erwinia genus inducing HR were isolated in large numbers from active cherry canker where pathogenic bacteria were not detected, may indicate that they play some role in the development of cherry tree canker.     

金丝桃属植物化学成分研究进展

到目前为止,已从金丝桃属植物中分离得到300多种化合物,主要特征化学成分为萘骈二蒽酮、间苯三酚、酮和黄酮等类型化合物;也含有香豆素、苯丙素、萜类和挥发油等其它类型的化学成分。本文按照化合物结构类型进行了归纳,综述了该类植物的化学成分研究进展,同时简述了这些成分的相关药理作用。     

Complete genome sequence of Kangiella koreensis type strain (SW-125)

Kangiella koreensis (Yoon et al. 2004) is the type species of the genus and is of phylogenetic interest because of the very isolated location of the genus Kangiella in the gammaproteobacterial order Oceanospirillales. K. koreensis SW-125(T) is a Gram-negative, non-motile, non-spore-forming bacterium isolated from tidal flat sediments at Daepo Beach, Yellow Sea, Korea. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the genus Kangiella and only the fourth genome from the order Oceanospirillales. This 2,852,073 bp long single replicon genome with its 2647 protein-coding and 48 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.     

Identification of dimethyl disulfide-forming bacteria isolated from activated sludge

Twenty-four strains with high dimethyl disulfide (DMDS)-forming ability were isolated from activated sludge and identified to the genus level. These bacteria were classified into four groups (A, B, C, and D) by the API ZYM System (API System S.A., Montalieu, France). Group A (three strains) was identified as genus Lactobacillus by the API 20B System, by the method of Cowan and Steel, and by production of lactic acid as confirmed by gas-liquid chromatography. Group B (eight strains) was identified as genus Corynebacterium by API 20B and the Cowan and Steel method. Group C (one strain) was suggested to belong to genus Corynebacterium by the API 20B System. Group D (12 strains) was identified as genus Pseudomonas or Alcaligenes by the API 20B System, as genus Alcaligenes by the Cowan and Steel method, and as Achromobacter group Vd by the API 20NE System. However, on the basis of guanine-plus-cytosine contents in DNA and form of flagella, these strains were identified as genus Pseudomonas. Formation of DMDS from DL-methionine and S-methyl-L-cysteine was tested. DMDS-forming bacteria isolated from activated sludge formed DMDS from both precursors. In genus Pseudomonas, P. aeruginosa could not form DMDS from either precursor, but P. acidovorans, P. alcaligenes, P. pseudoalcaligenes, and P. testosteroni formed DMDS. In genus Alcaligenes, A. denitrificans subsp. xylosoxydans, A. denitrificans subsp. denitrificans, A. faecalis, and A. odorans formed DMDS from both precursors. Achromobacter group Vd formed DMDS from S-methyl-L-cysteine, but could not from DL-methionine.     

1H NMR spectra of trypsin inhibitors from seeds of Cucurbitaceae plants. Resonance signals of methyl groups

1H NMR spectra (250 MHz) of four trypsin inhibitors isolated from seeds of Cucurbitaceae plants were studied. It was found that structural differences between the inhibitors from the genus Cucurbita and from the genus Cucumis consist, among others, in the presence in the former group of a valine residue strongly shielded from the solvent.     

镰刀菌属分类学研究历史与现状

镰刀菌是农作物和经济作物的重要病原菌,其产生的真菌毒素可危及人畜健康。近十几年来欧美的科学家在研究技术上有新的突破,使镰刀菌属种的概念在认识上有迅速的发展,尤其是那些引起谷类作物严重病害,并产生毒素的种类。在我国,从谷类粮食、饲料中检出镰刀菌毒素的现象屡有报道,我们对镰刀菌属种以及产生这些毒素的菌种(菌株)的认识还有待进一步加强。     

河南叶县岩盐可培养中度嗜盐菌的多样性

【背景】嗜盐微生物因为独特的生理和代谢特征而对高盐环境有着良好的适应能力,在环境污染治理、酶制剂等领域具有很高的应用和研究价值,是一类重要的极端环境微生物资源。【目的】为了更好地认识我国岩盐微生物的多样性,开发和利用嗜盐微生物资源,积累丰富的微生物菌种资源。【方法】在5%和10%的盐度下,使用Alkaline oligotrophic medium (AOM)、Neutral haloarchaeal medium (NHM)、Diluted modified marine agar (dmMA)和ISP3 medium (ISP3)四种培养基,分离和纯化河南叶县岩盐矿的卤水和盐土中的嗜盐菌,使用细菌通用引物27F和1492R扩增和测序纯化菌株的16SrRNA基因,使用Ez BioCloud和NCBI上的BLAST比对进行分子鉴定,使用MEGA5.0进行遗传进化分析。【结果】从河南叶县岩盐卤水和盐土中一共分离和纯化到78株细菌,菌株16S rRNA基因序列显示它们来自3个门:厚壁菌门(Firmicutes)的Bacillus 26株、Halobacillus 30株、Oceanobac...     

Characterization and fibrinolytic activity of Acetobacter sp. FP1 isolated from fermented pine needle extract

The strain KCTC 11629BP, isolated from spontaneously fermented pine needle extract (FPE), showed fibrinolysis activity. The isolated strain was analyzed in physiological and biochemical experiments. Based on 16S rDNA sequencing and phylogenic tree analysis, the strain was identified to be a part of the genus Acetobacter, with Acetobacter senegalensis and Acetobacter tropicalis as the closest phylogenetic neighbors. Based on genotypic and phenotypic results, it was proposed that bacterial strain KCTC 11629BP represents a species of the genus Acetobacter. The strain was thusly named Acetobacter sp. FP1. In conclusion, Acetobacter sp. FP1 isolated from FPE possesses fibrinolytic activity.