Reef fish assemblages in north-western Sri Lanka: distribution patterns and influences of fishing practises

The distribution and abundance of reef fishes in relation to habitat structure were studied within Bar Reef Marine Sanctuary (BRMS) and on an adjacent reef, disturbed by destructive fishing techniques, in north-western Sri Lanka, by visually censusing 135 species groups using fifty metre belt-transects. Two types of continental shelf patch-reefs are found in the study area: coral reefs and sandstone reefs, which are divided into distinct habitats, four for the coral reef (shallow reef flat, shallow patch reef, deep reef flat and Porites domes) and two for the sandstone reef (structured sandstone-reef and flat sandstone-reef). Fish assemblages varied in structure between reef types and among habitats within reef types. Functional aspects of habitat structure and composition, such as available food and shelter, seemed to be important factors influencing distribution patterns. The strongest separation in the organisation of fish assemblages in BRMS was between reef types: 19% of all species were confined to the coral-reef patches while 22% were restricted to the sandstone reef patches and 59% were represented on both reef types. In terms of distribution among habitats, 21% of all species were restricted to one habitat while only 1.5% were present in all. The highest density of fish was in the coral reef habitats while highest species diversity was found in the most structurally complex habitat: the structured sandstone-reef. This habitat also had the highest proportion of species with restricted distribution. Planktivores were the most abundant trophic group in BRMS, and the species composition of the group varied among habitats. The comparison of the disturbed reef with BRMS suggested that habitat alteration caused by destructive fishing methods has strongly influenced the fish community. Within the fished area the structure of the fish assemblages was more heterogeneous, fish abundance was lower by an order of magnitude and species numbers were lower than in BRMS.     

Role of colonization in spatio-temporal patchiness of microgastropods in coralline turf habitat

The ability of benthic macrofauna to disperse and colonize new habitats throughout their life may contribute substantially to small-scale patchiness in abundances in different habitats. Microgastropods in coralline turf on rocky shores in Australia are very patchy in abundance at different spatio-temporal scales. They therefore represent an ideal assemblage for testing hypotheses about processes of colonization. Patterns and rates of colonization of 10 species of microgastropods were investigated in one intertidal habitat (coralline turf) in Botany Bay, New South Wales, Australia, using artificial substrata, which are considered to be a good mimic of natural coralline turfs. The experiment was designed to test the hypotheses that (1) patterns (abundance of colonizing individuals) and mode (juveniles vs. adults) of colonization depends on the proximity of a patch to a potential source of dispersing colonists (i.e. patch of natural coralline turf), (2) different species show different rates of colonization, and (3) patterns of succession are not repeatable among different patches of natural algae. Seven different plots (natural patches of coralline turf) were randomly chosen in the area of study. Artificial units (called patches) were placed at different distances around each plot (within the plot and 0, 50 or 100 cm away from the edge). Samples were collected 6, 13, and 27 days after the experiment started. Colonization was rapid (i.e. within 6 days) for most species. Pattern (number of individuals) and mode of colonization (adults vs. juveniles) varied among algal plots. Most species responded differently across patches causing no consistent patterns of colonization. Furthermore, patterns of colonization of artificial units were not always synchronous with, or in the same direction as, changes in abundances in the nearest algal plots, which themselves showed no consistent spatio-temporal pattern.     

Intertidal assemblages associated with natural<Emphasis Type="Italic">corallina</Emphasis> turf and invasive mussel beds

There is considerable concern about conservation of biodiversity in highly disturbed and urbanized environments, although a very large proportion of biodiversity (i.e. the small and cryptic invertebrates) have been little studied in this regard. Many biogenic structures (e.g. coral reefs, mussel beds, foliose algae) provide habitat for a large number of small invertebrates. The features of these habitats to which these animals respond are complex and poorly documented. Invasive species are increasing in abundance and diversity in many disturbed estuaries, but most previous studies have concentrated on effects of invasive species on surrounding macroscopic assemblages. This study examines the assemblages of small invertebrates and algae living in natural patches of coralline turf and in patches of the invasive mussel, Mytilus galloprovincialis, on seawalls in Sydney Harbour. Although most taxa identified were common to both habitats, they were generally more abundant in turf than in the mussels, especially the more widespread and numerous taxa. Few taxa were unique to either habitat and those were generally sparse and patchy. In addition, there were relatively more smaller animals in the algal turf than in the mussels, although it is not known whether these were juveniles of adults present in both habitats, or different species. These data show that coralline turf and mussel beds do not provide similar intertidal habitat for associated assemblages and that overgrowth of natural biota by mussels may have strong indirect effects on associated assemblages. These warrant further experimental investigation, so that the effects of invasive species on local biodiversity can be better understood and managed.     

Extinction-colonization dynamics and host-plant choice in butterfly metapopulations

Species living in highly fragmented landscapes often occur as metapopulations with frequent population turnover. Turnover rate is known to depend on ecological factors, such as population size and connectivity, but it may also be influenced by the phenotypic and genotypic composition of populations. The Glanville fritillary butterfly (Melitaea cinxia) in Finland uses two host-plant species that vary in their relative abundances among distinct habitat patches (dry meadows) in a large network of approximately 1,700 patches. We found no effect of host species use on local extinction. In contrast, population establishment was strongly influenced by the match between the host species composition of an empty habitat patch and the relative host use by larvae in previous years in the habitat patches that were well connected to the target patch. This "colonization effect" could be due to spatially variable plant acceptability or resistance or to spatially variable insect oviposition preference or larval performance. We show that spatial variation in adult oviposition preference occurs at the relevant spatial scale and that the other possible causes of the colonization effect can be discounted. We conclude that the colonization effect is generated by host preference influencing the movement patterns of ovipositing females. Migrant females with dissimilar host preferences have different perceptions of relative patch quality, which influences their likelihood of colonizing patches with particular host composition.     

Landscape configuration drives persistent spatial patterns of occupant distributions

Variation in the density of organisms among habitat patches is often attributed to variation in inherent patch properties. For example, higher quality patches might have higher densities because they attract more colonists or confer better post-colonization survival. However, variation in occupant density can also be driven by landscape configuration if neighboring patches draw potential colonists away from the focal habitat (a phenomenon we call propagule redirection). Here, we develop and analyze a stochastic model to quantify the role of landscape configuration and propagule redirection on occupant density patterns. We model a system with a dispersive larval stage and a sedentary adult stage. The model includes sensing and decision-making in the colonization stage and density-dependent mortality (a proxy for patch quality) in the post-colonization stage. We demonstrate that spatial variation in colonization is retained when the supply of colonists is not too high, post-colonization density-dependent survival is not too strong, and colonization events are not too frequent. Using a reef fish system, we show that the spatial variation produced by propagule redirection is comparable to spatial variation expected when patch quality varies. Thus, variation in density arising from the spatial patterning of otherwise identical habitat can play an important role in shaping long-term spatial patterns of organisms occupying patchy habitats. Propagule redirection is a potentially powerful mechanism by which landscape configuration can drive variation in occupant densities, and may therefore offer new insights into how populations may shift as landscapes change in response to natural and anthropogenic forces.     

Biophysical Constraints on Optimal Patch Lengths for Settlement of a Reef-Building Bivalve

Reef-building species form discrete patches atop soft sediments, and reef restoration often involves depositing solid material as a substrate for larval settlement and growth. There have been few theoretical efforts to optimize the physical characteristics of a restored reef patch to achieve high recruitment rates. The delivery of competent larvae to a reef patch is influenced by larval behavior and by physical habitat characteristics such as substrate roughness, patch length, current speed, and water depth. We used a spatial model, the “hitting-distance” model, to identify habitat characteristics that will jointly maximize both the settlement probability and the density of recruits on an oyster reef (Crassostrea virginica). Modeled larval behaviors were based on laboratory observations and included turbulence-induced diving, turbulence-induced passive sinking, and neutral buoyancy. Profiles of currents and turbulence were based on velocity profiles measured in coastal Virginia over four different substrates: natural oyster reefs, mud, and deposited oyster and whelk shell. Settlement probabilities were higher on larger patches, whereas average settler densities were higher on smaller patches. Larvae settled most successfully and had the smallest optimal patch length when diving over rough substrates in shallow water. Water depth was the greatest source of variability, followed by larval behavior, substrate roughness, and tidal current speed. This result suggests that the best way to maximize settlement on restored reefs is to construct patches of optimal length for the water depth, whereas substrate type is less important than expected. Although physical patch characteristics are easy to measure, uncertainty about larval behavior remains an obstacle for predicting settlement patterns. The mechanistic approach presented here could be combined with a spatially explicit metapopulation model to optimize the arrangement of reef patches in an estuary or region for greater sustainability of restored habitats.     

Single-species metapopulation dynamics: concepts, models and observations

This paper outlines a conceptual and theoretical framework for single-species metapopulation dynamics based on the Levins model and its variants. The significance of the following factors to metapopulation dynamics are explored: evolutionary changes in colonization ability; habitat patch size and isolation; compensatory effects between colonization and extinction rates; the effect of immigration on local dynamics (the rescue effect); and heterogeneity among habitat patches. The rescue effect may lead to alternative stable equilibria in metapopulation dynamics. Heterogeneity among habitat patches may give rise to a bimodal equilibrium distribution of the fraction of patches occupied in an assemblage of species (the core-satellite distribution). A new model of incidence functions is described, which allows one to estimate species' colonization and extinction rates on islands colonized from mainland. Four distinct kinds of stochasticity affecting metapopulation dynamics are discussed with examples. The concluding section describes four possible scenarios of metapopulation extinction.     

Colonization Credit in Restored Wet Heathlands

Although human‐driven landscape modification is generally characterized by habitat destruction and fragmentation, it may also result in the creation of new habitat patches, providing conditions conducive to spontaneous colonization. In this article, we propose the concept of “colonization credit” (i.e., the number of species yet to colonize a patch, following landscape changes) as a framework to evaluate the success of colonization, in terms of species richness, in new/restored habitats, taking into account the spatial structure of landscapes. The method mirrors similar approaches used to estimate extinction debt in the context of habitat fragmentation, that is, comparisons, between old and new habitat patches, of the relationships among spatial patch metrics and patch species richness. We applied our method to the case of spontaneous colonization of newly created habitat patches suitable for wet heathland plant communities in South Belgium. Colonization credit was estimated for the total species richness, the specialist species richness, and the species richness of three emergent groups (EGs) of specialist species, delineated on the basis of dispersal traits. No significant colonization credit was identified either in patches created 25–55 years ago or in those created within the past 25 years, with the exception of species from our first EG (mostly anemochorous species with long‐term persistent seed bank). However, the differential response of species in that first EG could not be explained through their characteristic life history traits. The results of this study are encouraging and suggest that deliberate, directed restoration activities could yield positive developments in a relatively short period of time.     

The role of colonization in the dynamics of patchy populations of a cyclic vole species

The crash phase of vole populations with cyclic dynamics regularly leads to vast areas of uninhabited habitats. Yet although the capacity for cyclic voles to re-colonize such empty space is likely to be large and predicted to have become evolved as a distinct life history trait, the processes of colonization and its effect on the spatio-temporal dynamics have been little studied. Here we report from an experiment with root voles (Microtus oeconomus) specifically targeted at quantifying the process of colonization of empty patches from distant source patches and its resultant effect on local vole deme size variation in a patchy landscape. Three experimental factors: habitat quality, predation risk and inter-patch distance were employed among 24 habitat patches in a 100 × 300-m experimental area. The first-born cohort in the spring efficiently colonized almost all empty patches irrespective of the degree of patch isolation and predation risk, but this was dependent on habitat quality. Just after the initial colonization wave the deme sizes in patches of the same quality were underdispersed relative to Poisson variance, indicating regulated (density-dependent) settlement. Towards the end of the breeding season local demographic processes acted to smooth out the initial post-colonization differences among source and colonization patches, and among patches of initially different quality. However, at this time demographic stochasticity had also given rise to a large (overdispersed) variation in deme sizes that may have contributed to an overshadowing of the effect of other factors. The results of this experiment confirmed our expectation that the space-filling capacity of voles is large. The costs associated with transience appeared to be so low, at least at the spatial scale considered in this experiment, that such costs are not likely to substantially constrain habitat selection and colonization in the increase phase of cyclic patchy populations.     

Ecological structure of assemblages of coral reef fishes on isolated patch reefs

A 9-year study of the structure of assemblages of fish on 20 coral patch reefs, based on 20 non-manipulative censuses, revealed a total of 141 species from 34 families, although 40 species accounted for over 95% of sightings of fish. The average patch reef was 8.5 m² in surface area, and supported 125 fish of 20 species at a census. All reefs showed at least a two-fold variation among censuses in total numbers of fish present, and 12 showed ten-fold variations. There was also substantial variation in the composition and relative abundances of species present on each patch reef, such that censuses of a single patch reef were on average about 50% different from each other in percent similarity of species composition (Czekanowski's index). Species differed substantially in the degree to which their numbers varied from census to census, and in the degree to which their dispersion among patch reefs was modified from census to census. We characterize the 40 most common species with respect to these attributes. The variations in assemblage structure cannot be attributed to responses of fish to a changing physical structure of patch reefs, nor to the comings and goings of numerous rare species. Our results support and extend earlier reports on this study, which have stressed the lack of persistant structure for assemblages on these patch reefs. While reef fishes clearly have microhabitat preferences which are expressed at settlement, the variations in microhabitat offered by the patch reefs are insufficient to segregate many species of fish by patch reef. Instead, at the scale of single patch reefs, and, to a degree, at the larger scale of the 20 patch reefs, most of the 141 species of fish are distributed without regard to differences in habitat structure among reefs, and patterns of distribution change over time. Implications for general understanding of assemblage dynamics for fish over more extensive patches of reef habitat are considered.     

Coral and sandstone reef-habitats in north-western Sri Lanka: patterns in the distribution of coral communities

Coral and sandstone reefs cover a significant part ofSri Lanka‘s continental shelf and contain incomparison unique reef structures. Despite this, reefsin this region of the northern Indian Ocean havereceived little research attention. In an attempt tobetter understand these ecosystems and their innatecharacter, this study describes the variety of reeftypes and habitats that are found in this area. Thestudy concentrated on four major reef areas: the BarReef Marine Sanctuary (BRMS), Kandakuliya Reefs,Talawila Reef, and Mampuri Reef. These reefs showedapparent differences in habitat structure in terms ofthe proportion coral cover, coral species compositionand structural complexity. Two reef types were presentwithin the continental shelf of BRMS: coral andsandstone patch-reefs. Acropora was the mostdominant coral genera however in total 118madreporarian species and 50 coral genera wererecorded in the sanctuary. Distinct habitats wereidentified within reef types including shallow reefflat, shallow patch reef, deep reef flat and Porites dome habitats for the coral-reef patcheswhile the sandstone-reef patches were divided intostructured and flat sandstone reef habitats.Kandakuliya Reef south of BRMS was by large dominatedby coral rubble. Talawila Reef and Mampuri Reef showedunique structures with the former being dominated bymassive corals and the latter mainly containingsandstone structures. In addition to factors such asbio-erosion, sedimentation, hydrodynamics, andrecruitment or colonisation processes, some reefs wereclearly under significant direct human impact whichappeared to play a dominant role in habitatstructuring. However, type and degree of humandisturbance varied among the reefs. Habitat alterationat Kandakuliya Reef was the result of intense fishingusing destructive fishing methods. Talawila Reef andMampuri Reef was also influenced by fishing activitiesthough reef structure seemed less affected. This revised version was published online in July 2006 with corrections to the Cover Date.     

Does variation in patch use among butterfly species contribute to nestedness at fine spatial scales?

A nested pattern occurs whenever the species observed in depauperate habitat patches are a subset of those found in more species‐rich patches. Ecologists have documented many instances of nestedness caused by population‐level processes such as colonization and extinction at biogeographic scales. However, few researchers have examined whether nestedness may exist at fine scales due to the ways in which individual organisms discriminate among potential habitat patches. In 1999, we experimentally fragmented an old‐field habitat into patches of varying size to test whether nestedness could exist on a fine spatial scale. Five treatments of differing patch size were replicated five times in a Latin square design by selectively mowing 15×15 m² plots within an old‐field (patch areas: 225, 180, 135, 90, and 45 m²). Specifically, we tested whether butterflies foraging within a network of patches differing in area conformed to a nested subset structure. We also classified species according to (1) their flight height while foraging (high or low), and (2) their adult habitat breadth (ubiquitous, general, or restricted) to determine whether nestedness could be explained by difference in species’ tendency to discriminate among patches differing in area.
We found significant evidence that a community of foraging Lepidoptera conformed to a nested subset structure based on the difference between the observed nestedness within the butterfly community and the nestedness obtained from randomly generated species presence/absence matrices. Poisson regression analyses demonstrated that high‐flying, habitat‐restricted species avoided the smallest patches (90 and 45 m²) in favor of larger remnants, whereas low‐flying, habitat generalists used all patch sizes. Thus, our study is one of the first to demonstrate that nestedness among species subsets can be observed at fine spatial scales (within a single 1.5 hectare field) and may be maintained by species behavioral differences: discriminating species (i.e. high‐flying, habitat restricted) avoided the smallest patches, and less discriminating species (i.e. low‐flying, ubiquitous) were distributed throughout the field without regard to patch size. Our results also suggest that nestedness should be viewed as yet another scalar pattern in ecology, generated by variation in patch use by individuals at fine‐scales as well as the more traditionally invoked processes of extinction and colonization of species at broad‐scales.     

Effects of habitat edges on American lobster abundance and survival

Habitat edges frequently possess distinct ecological conditions that affect interactions such as competition and predation. Within a species' preferred habitat, the structural complexity and resource availability of adjacent habitats may influence the effect of edges on ecological processes. In nearshore waters of New England, American lobsters (Homarus americanus) inhabit fragmented cobble reefs that often are bordered by unvegetated sediment and occasionally by seagrass. We determined whether proximity to cobble patch edges, microhabitat characteristics within cobble habitat, and the type of habitat adjacent to cobble patches (seagrass or unvegetated sediment) influence the density and survival of juvenile and adult American lobsters in Narragansett Bay, Rhode Island, USA. We surveyed naturally occurring cobble patches and artificial cobble reefs to determine how the odds of finding lobsters varied with distance from the edge and habitat type. Additionally, we tethered lobsters at different distances from the edge inside and outside of cobble patches to determine how lobster relative survival varied with edge proximity and habitat type. In cobble habitat, the odds of finding large lobsters (adolescents and adults > 40 mm carapace length (CL)) were highest near patch edges regardless of adjacent habitat type, whereas smaller lobsters (e.g. emergent juveniles 15-25 mm CL) were more abundant in patch interiors when seagrass bordered cobble patches. The odds of finding lobsters also increased with the relative amount of cobble cover within patches. In predation experiments, lobster relative survival after 6 h was lowest outside of cobble and increased toward cobble patch interiors, but after 24 h this trend disappeared or reversed. Seagrass appeared to offer greater refuge for lobsters than did unvegetated sediment. Our results suggest that proximity to patch edges influences lobster distribution and survival, and that edge effects on lobsters vary with life history phase and with the type of habitat adjacent to cobble patches.     

达乌尔鼠兔扩散过程中的生境选择

通过调控牧压,研究了达乌尔鼠兔扩散过程中的生境选择。结果表明,放牧活动强了草原植被的斑块性,改变了植被为鼠兔提供的资源条件,导致鼠兔斑块间的扩散和扩散鼠兔对不同植被斑块的生境选择。     

Linking fish colonization rates and water level change in littoral habitats of a Venezuelan floodplain river

Change in water level during the annual hydrologic cycle of tropical floodplain rivers results in continuous disassembly and reassembly of faunal communities in littoral habitat patches. As such, the rate of water level change should influence colonization rates of vagile organisms among habitat patches. We experimentally tested this hypothesis in a Venezuela floodplain river using artificial rocky patches as sampling units, water level change as the independent variable, and total number of individual fish that colonized a patch as the response variable. Water level significantly affected the total number of individuals that colonized patch habitats, i.e., rapidly receding waters were associated with higher colonization rates. Results suggest that water-level recession directly affects community assembly by influencing the rate at which individuals abandon and colonize local habitat patches.     

Colonization and extinction dynamics of an annual plant metapopulation in an urban environment

The metapopulation framework considers that the spatiotemporal distribution of organisms results from a balance between the colonization and extinction of populations in a suitable and discrete habitat network. Recent spatially realistic metapopulation models have allowed patch dynamics to be investigated in natural populations but such models have rarely been applied to plants. Using a simple urban fragmented population system in which favourable habitat can be easily mapped, we studied patch dynamics in the annual plant Crepis sancta (Asteraceae). Using stochastic patch occupancy models (SPOMs) and multi‐year occupancy data we dissected extinction and colonization patterns in our system. Overall, our data were consistent with two distinct metapopulation scenarios. A metapopulation (sensu stricto) dynamic in which colonization occurs over a short distance and extinction is lowered by nearby occupied patches (rescue effect) was found in a set of patches close to the city centre, while a propagule rain model in which colonization occurs from a large external population was most consistent with data from other networks. Overall, the study highlights the importance of external seed sources in urban patch dynamics. Our analysis emphasizes the fact that plant distributions are governed not only by habitat properties but also by the intrinsic properties of colonization and dispersal of species. The metapopulation approach provides a valuable tool for understanding how colonization and extinction shape occupancy patterns in highly fragmented plant populations. Finally, this study points to the potential utility of more complex plant metapopulation models than traditionally used for analysing ecological and evolutionary processes in natural metapopulations.     

Do invasive species undergo metapopulation dynamics? A case study of the invasive Caspian gull,Larus cachinnans,in Poland

Aim The mechanisms of initial dispersal and habitat occupancy by invasive alien species are fundamental ecological problems. Most tests of metapopulation theory are performed on local population systems that are stable or in decline. In the current study we were interested in the usefulness of metapopulation theory to study patch occupancy, local colonization, extinction and the abundance of the invasive Caspian gull (Larus cachinnans) in its initial invasion stages. Location Waterbodies in Poland. Methods Characteristics of the habitat patches (waterbodies, 35 in total) occupied by breeding pairs of Caspian gulls and an equal sample of randomly selected unoccupied patches were compared with t‐tests. Based on presence–absence data from 1989 to 2006 we analysed factors affecting the probability of local colonization, extinction and the size of local populations using generalized linear models. Results Occupied habitat patches were significantly larger and less isolated (from other habitat patches and other local populations) and were located closer to rivers than empty patches. The proximity of local food resources (fish ponds, refuse dumps) positively affected the occurrence of breeding pairs. The probability of colonization was positively affected by patch area, and negatively by distances to fish ponds, nearest habitat patch, nearest breeding colony and to a river, and by higher forest cover around the patch boundaries. The probability of extinction was lower in patches with a higher number of breeding pairs and with a greater area of islets. The extinction probability increased with distances to other local populations, other habitat patches, fish ponds and to refuse dumps and with a higher cover of forest around the patch boundaries. The size of the local population decreased with distances to the nearest habitat patch, local population, river, fish pond and refuse dump. Local abundance was also positively affected by the area of islets in the patch. Main conclusions During the initial stages of the invasion of Caspian gulls in Poland the species underwent metapopulation‐like dynamics with frequent extinctions from colonized habitat patches. The results prove that metapopulation theory may be a useful conceptual framework for predicting which habitats are more vulnerable to invasion.     

Metacommunity,mainland‐island system or island communities? Assessing the regional dynamics of plant communities in a fragmented landscape

Understanding the regional dynamics of plant communities is crucial for predicting the response of plant diversity to habitat fragmentation. However, for fragmented landscapes the importance of regional processes, such as seed dispersal among isolated habitat patches, has been controversially debated. Due to the stochasticity and rarity of among‐patch dispersal and colonization events, we still lack a quantitative understanding of the consequences of these processes at the landscape‐scale. In this study, we used extensive field data from a fragmented, semi‐arid landscape in Israel to parameterize a multi‐species incidence‐function model. This model simulates species occupancy pattern based on patch areas and habitat configuration and explicitly considers the locations and the shapes of habitat patches for the derivation of patch connectivity. We implemented an approximate Bayesian computation approach for parameter inference and uncertainty assessment. We tested which of the three types of regional dynamics – the metacommunity, the mainland‐island, or the island communities type – best represents the community dynamics in the study area and applied the simulation model to estimate the extinction debt in the investigated landscape. We found that the regional dynamics in the patch‐matrix study landscape is best represented as a system of highly isolated ‘island’ communities with low rates of propagule exchange among habitat patches and consequently low colonization rates in local communities. Accordingly, the extinction rates in the local communities are the main drivers of community dynamics. Our findings indicate that the landscape carries a significant extinction debt and in model projections 33–60% of all species went extinct within 1000 yr. Our study demonstrates that the combination of dynamic simulation models with field data provides a promising approach for understanding regional community dynamics and for projecting community responses to habitat fragmentation. The approach bears the potential for efficient tests of conservation activities aimed at mitigating future losses of biodiversity.     

Landscape genetic connectivity in European wildcat (Felis silvestris silvestris): a matter of food,shelters and demographic status of populations

Understanding landscape impacts on gene flow is necessary to plan comprehensive management and conservation strategies of both the species of interest and its habitat. Nevertheless, only a few studies have focused on the landscape genetic connectivity of the European wildcat, an umbrella species whose conservation allows the preservation of numerous other species and habitat types. We applied population and landscape genetics approaches, using genotypes at 30 microsatellites from 232 genetically-identified wildcats to determine if, and how, landscape impacted gene flow throughout France. Analyses were performed independently within two population patches: the historical north-eastern patch and the central patch considered as the colonization front. Our results showed that gene flow occurred at large spatial scales but also revealed significant spatial genetic structures within population patches. In both population patches, arable areas, pastures and permanent grasslands and lowly fragmented forested areas were permeable to gene flow, suggesting that shelters and dietary resources are among the most important parameters for French wildcat landscape connectivity, while distance to forest had no detectable effect. Anthropized areas appeared highly resistant in the north-eastern patch but highly permeable in the central patch, suggesting that different behaviours can be observed according to the demographic context in which populations are found. In line with this hypothesis, spatial distribution of genetic variability seemed uneven in the north-eastern patch and more clinal in the central patch. Overall, our results highlighted that European wildcat might be a habitat generalist species and also the importance of performing spatial replication in landscape genetics studies.

     

Implications of empirical data quality to metapopulation model parameter estimation and application

Parameter estimation is a critical step in the use of any metapopulation model for predictive purposes. Typically metapopulation studies assume that empirical data are of good quality and any errors are so insignificant that they can be ignored. However, three types of errors occur commonly in metapopulation data sets. First, patch areas can be mis-estimated. Second, unknown habitat patches may be located within or around the study area. Third, there may be false zeros in the data set, that is, some patches were observed to be empty while there truly was a population in the patch. This study investigates biases induced into metapopulation model parameter estimates by these three types of errors. It was found that mis-estimated areas influence the scaling of extinction risk with patch area; extinction probabilities for large patches become overestimated. Missing patches cause overestimation of migration distances and colonization ability of the species. False zeros can affect very strongly all model components, the extinction risk in large patches, intrinsic extinction rates in general, migration distances and colonization ability may become all overestimated. Biases in parameter estimates translate into corresponding biases in model predictions, which are serious particularly if metapopulation persistence becomes overestimated. This happens for example when the migration capability of the species is overestimated. Awareness of these biases helps in understanding seemingly anomalous parameter estimation results. There are also implications for field work: it may be reasonable to allocate effort so that serious errors in data are minimized. It is particularly important to avoid observing false zeros for large and/or isolated patches.