共查询到20条相似文献,搜索用时 31 毫秒
1.
Peter beim Graben Dimitris Pinotsis Douglas Saddy Roland Potthast 《Cognitive neurodynamics》2008,2(2):79-88
We construct a mapping from complex recursive linguistic data structures to spherical wave functions using Smolensky’s filler/role
bindings and tensor product representations. Syntactic language processing is then described by the transient evolution of
these spherical patterns whose amplitudes are governed by nonlinear order parameter equations. Implications of the model in
terms of brain wave dynamics are indicated.
Electronic supplementary material The online version of this article (doi: ) contains supplementary material, which is available to authorized users.
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Peter beim GrabenEmail: |
2.
Peter Godfrey-Smith 《Biology & philosophy》2007,22(3):429-437
Jablonka and Lamb's claim that evolutionary biology is undergoing a ‘revolution’ is queried. But the very concept of revolutionary
change has uncertain application to a field organized in the manner of contemporary biology. The explanatory primacy of sequence
properties is also discussed.
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Peter Godfrey-SmithEmail: |
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Chris Haufe 《Biology & philosophy》2008,23(1):115-128
The importance of mate choice and sexual selection has been emphasized by the majority of evolutionary psychologists. This
paper assesses three cases of work on mate choice and sexual selection in evolutionary psychology: David Buss on cross-cultural
human mate preferences, Randy Thornhill and Steve Gangestad on the link between mate preferences and fluctuating asymmetry,
and Geoffrey Miller on the role of Fisher’s runaway process in human evolution. A mixture of conceptual and empirical problems
in each case highlights the general weakness of work in evolutionary psychology on these issues.
相似文献
Chris HaufeEmail: |
5.
Debates over adaptationism can be clarified and partially resolved by careful consideration of the ‘grain’ at which evolutionary
processes are described. The framework of ‘adaptive landscapes’ can be used to illustrate and facilitate this investigation.
We argue that natural selection may have special status at an intermediate grain of analysis of evolutionary processes. The
cases of sickle-cell disease and genomic imprinting are used as case studies.
相似文献
Peter Godfrey-SmithEmail: |
6.
Sub-Antarctic Marion Island has had a permanent research station for 50 years and the islands Wandering Albatrosses have been intensively studied for 20 years. The reactions of breeding birds to approaches by a human on foot were recorded. Three response variables were calculated: intensity of vocal reaction (IVR), intensity of non-vocal reaction (INR) and overall response index (ORI). At 5 m from the nest, twice as many birds stood and/or vocalised as at 15 m. Nearest neighbour distance, age and gender did not explain individual variability of responses. Study colony birds had higher IVR scores than non-study colony birds; birds at colonies closest to the station had the highest ORI scores. A better breeding record was associated with lower IVR and ORI scores, but a causative relationship remains to be demonstrated. A minimum viewing distance of 25 m is recommended for breeding Wandering Albatrosses.
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Marienne S. de VilliersEmail: Fax: +27-21-6503434 |
John CooperEmail: |
Peter G. RyanEmail: |
7.
Roger Sansom 《Biology & philosophy》2009,24(4):441-459
One current version of the internalism/externalism debate in evolutionary theory focuses on the relative importance of developmental
constraints in evolutionary explanation. The received view of developmental constraints sees them as an internalist concept
that tend to be shared across related species as opposed to selective pressures that are not. Thus, to the extent that constraints
can explain anything, they can better explain similarity across species, while natural selection is better able to explain
their differences. I challenge both of these aspects of the received view and propose a hierarchical view of constraints.
相似文献
Roger SansomEmail: |
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T. Ryan Gregory 《Evolution》2008,1(3):259-273
The occurrence, generality, and causes of large-scale evolutionary trends—directional changes over long periods of time—have
been the subject of intensive study and debate in evolutionary science. Large-scale patterns in the history of life have also
been of considerable interest to nonspecialists, although misinterpretations and misunderstandings of this important issue
are common and can have significant implications for an overall understanding of evolution. This paper provides an overview
of how trends are identified, categorized, and explained in evolutionary biology. Rather than reviewing any particular trend
in detail, the intent is to provide a framework for understanding large-scale evolutionary patterns in general and to highlight
the fact that both the patterns and their underlying causes are usually quite complex.
相似文献
T. Ryan GregoryEmail: |
12.
The recent contribution by Jarmila Kukalová-Peck on Hennigian phylogenetics and hexapod limb evolution is critically evaluated.
相似文献
Michael S. Engel (Corresponding author)Email: |
13.
This paper focuses on evolution as a unifying theme in biology education. Our aim is to argue that the different topics taught
in secondary school biology classes should be enriched with and linked together by means of accounts of the history of life.
We named this approach a “natural history perspective” on biology education. An essential aspect of the natural history perspective
is the claim that evolutionary history forms the context for the development of an understanding of evolutionary processes.
While there are some indications that a natural history perspective can function as a context for understanding micro-evolutionary
processes, more research is called for.
相似文献
Esther M. van DijkEmail: |
14.
T. Ryan Gregory 《Evolution》2008,1(2):121-137
Charles Darwin sketched his first evolutionary tree in 1837, and trees have remained a central metaphor in evolutionary biology
up to the present. Today, phylogenetics—the science of constructing and evaluating hypotheses about historical patterns of
descent in the form of evolutionary trees—has become pervasive within and increasingly outside evolutionary biology. Fostering
skills in “tree thinking” is therefore a critical component of biological education. Conversely, misconceptions about evolutionary
trees can be very detrimental to one’s understanding of the patterns and processes that have occurred in the history of life.
This paper provides a basic introduction to evolutionary trees, including some guidelines for how and how not to read them.
Ten of the most common misconceptions about evolutionary trees and their implications for understanding evolution are addressed.
相似文献
T. Ryan GregoryEmail: |
15.
Anya Plutynski 《Biology & philosophy》2008,23(5):605-623
The discussion of the adaptive landscape in the philosophical literature appears to be divided along the following lines.
On the one hand, some claim that the adaptive landscape is either “uninterpretable” or incoherent. On the other hand, some
argue that the adaptive landscape has been an important heuristic, or tool in the service of explaining, as well as proposing
and testing hypotheses about evolutionary change. This paper attempts to reconcile these two views.
相似文献
Anya PlutynskiEmail: |
16.
Ursula Pieper Ranyee Chiang Jennifer J. Seffernick Shoshana D. Brown Margaret E. Glasner Libusha Kelly Narayanan Eswar J. Michael Sauder Jeffrey B. Bonanno Subramanyam Swaminathan Stephen K. Burley Xiaojing Zheng Mark R. Chance Steven C. Almo John A. Gerlt Frank M. Raushel Matthew P. Jacobson Patricia C. Babbitt Andrej Sali 《Journal of structural and functional genomics》2009,10(2):107-125
To study the substrate specificity of enzymes, we use the amidohydrolase and enolase superfamilies as model systems; members
of these superfamilies share a common TIM barrel fold and catalyze a wide range of chemical reactions. Here, we describe a
collaboration between the Enzyme Specificity Consortium (ENSPEC) and the New York SGX Research Center for Structural Genomics
(NYSGXRC) that aims to maximize the structural coverage of the amidohydrolase and enolase superfamilies. Using sequence- and
structure-based protein comparisons, we first selected 535 target proteins from a variety of genomes for high-throughput structure
determination by X-ray crystallography; 63 of these targets were not previously annotated as superfamily members. To date,
20 unique amidohydrolase and 41 unique enolase structures have been determined, increasing the fraction of sequences in the
two superfamilies that can be modeled based on at least 30% sequence identity from 45% to 73%. We present case studies of
proteins related to uronate isomerase (an amidohydrolase superfamily member) and mandelate racemase (an enolase superfamily
member), to illustrate how this structure-focused approach can be used to generate hypotheses about sequence–structure–function
relationships.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.
相似文献
Andrej Sali (Corresponding author)Email: URL: http://salilab.org |
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T. Ryan Gregory 《Evolution》2008,1(4):358-389
The origin of complex biological structures has long been a subject of interest and debate. Two centuries ago, natural explanations
for their occurrence were considered inconceivable. However, 150 years of scientific investigation have yielded a conceptual
framework, abundant data, and a range of analytical tools capable of addressing this question. This article reviews the various
direct and indirect evolutionary processes that contribute to the origins of complex organs. The evolution of eyes is used
as a case study to illustrate these concepts, and several of the most common misconceptions about complex organ evolution
are discussed.
相似文献
T. Ryan GregoryEmail: |
19.
The competitiveness of online algorithms is measured based on the correctness of the results produced and processing time
efficiency. Traditionally evolutionary algorithms are not favored in online paradigms because of the large number of iterations
involved in the algorithm which translates directly into processing time overhead. In this paper we describe MARS (Management
Architecture for Resource Services) online scheduling algorithm which uses Simulated Annealing and concepts from Tabu Search
to drastically decrease the processing time of the algorithm. The paper outlines the concepts behind MARS, the components
involved and scheduling methodology used. In addition we also identify the time consuming bottlenecks in the performance of
the system and how evolutionary algorithms help us soar past them.
相似文献
Hesham El-RewiniEmail: |
20.
Gérard Battail 《Biosemiotics》2008,1(2):221-238
This paper is intended to complement our previous works on the necessary existence of error-correcting codes endowing genomes
with the ability of being regenerated, not merely copied. It sketchily recalls some fundamental definitions and results of
information theory and error-correcting codes; provides an overview of our research; shows that the disjunction of replication
and regeneration enlightens the divide between germinal and somatic cells; suggests that some phenomena referred to as epigenetic
may possibly find an explanation within the framework of error-correcting codes; points out some difficulties, especially
those related to sexual reproduction; criticizes the template-replication paradigm, and prompts geneticists to become familiar
with information theory.
相似文献
Gérard BattailEmail: |