Quantifying relationships between traits and explicitly measured gradients of stress and disturbance in early successional plant communities

Questions: How can one explicitly quantify, and separately measure, stress and disturbance gradients? How do these gradients affect functional composition in early successional plant communities and to what extent? Can we accurately predict trait composition from knowledge of these gradients? Location: Southern Quebec, Canada. Methods: Using eight environmental variables measured in 48 early successional plant communities, we estimated stress and disturbance gradients through structural equation modelling. We then measured 10 functional traits on the most abundant species of these 48 communities and calculated their community‐level mean and variance weighted by the relative abundance of each species. Finally, we related these community‐weighted means and variances to the estimated stress and disturbance gradients using general linear models or generalized additive models. Results: We obtained a well‐fitting measurement model of the stress and disturbance gradients existing in our sites. Of the 10 studied traits, only average plant reproductive height was strongly correlated with the stress (r²=0.464) and disturbance (r²=0.543) gradients. Leaf traits were not significantly related to either the stress or disturbance gradients. Conclusions: The well‐fitting measurement model of the stress and disturbance gradients, combined with the generally weak trait–environment linkages, suggests that community assembly in these early successional plant communities is driven primarily by stochastic processes linked to the history of arrival of propagules and not to trait‐based environmental filtering.     

Honey bee and bumblebee trypanosomatids: specificity and potential for transmission

Abstract 1. Experimental studies of multihost parasite dynamics are scarce. Understanding the transmission dynamics of parasites in these systems is a key task in developing better models of parasite evolution and to make more accurate predictions of disease dynamics. 2. Bumblebee species (Bombus spp.) host the trypanosomatid parasite, Crithidia bombi. Its transmission in the field occurs through the shared use of flowers. Flowers are a perfect scenario for inter‐taxa transmission of diseases because they are used by a wide range of animals. 3. Honey bees host a poorly studied trypanosomatid, Crithidia mellificae. In this study, five questions have been experimentally addressed: (a) Can C. bombi infect honey bees? (b) Can C. mellificae infect bumblebees? (c) Can the honey bee act as a vector for C. bombi? (d) Are C. bombi cells present in honey‐bee faeces? (e) Does C. bombi have an effect on the mortality of honey bees after ingestion? 4. While both parasites were found to be specific to their hosts at the genus level, results suggest that honey bees may play a role in the epidemiology of C. bombi transmission.     

Neural stem cells: From fly to vertebrates

Our goal in this review is to explore the relationship between Drosophila and vertebrate neural stem cell development by comparing progress in each system with the aim of answering several central questions in stem cell biology: (a) How are stem cells formed? (b) Do stem cells divide symmetrically or asymmetrically? (c) How is stem cell fate maintained? (d) How is stem cell differentiation initiated? (e) How are different stem cell fates determined? (f) How “plastic” are different neural stem cell fates? (g) How do neural stem cells produce different progeny? and (h) What regulates stem cell proliferation versus quiescence? Not surprisingly, research in Drosophila and vertebrate systems each have their own biases, strengths, and weaknesses; we hope that by directly comparing progress in each field, new experiments and interpretations in both vertebrate and Drosophila research will become apparent. It has become increasingly clear that vertebrates and Drosophila share many fundamental mechanisms of neurogenesis, validating a comparative approach. © 1998 John Wiley & Sons, Inc. J Neurobiol 36: 111–127, 1998     

BOOK REVIEWS

Book Reviews in this Article: Good Intentions: How Big Business and the Medical Establishment Are Corrupting the Fight Against AIDS, Alzheimer's, Cancer and More, by Bruce Nussbaum. If I Were A Rich Man Could I Buy A Pancreas?: and other essays on the ethics of health care, by Arthur L. Caplan. Bloomington and Indianapolis Competency. A Study of Informal Competency Determinations in Primary Care. Edited by M.A. Gardell Cutter and E.E. Shelp. Ethics and Nursing Practice: A case study approach, by Ruth Chadwick and Win Tadd. Basingstoke Spare Parts: Organ Replacement in American Society by Renée C. Fox and Judith P. Swazey     

The origins of weedy rice

Where do weeds come from? How do they evolve from nonweedy ancestors? In this issue of Molecular Ecology, Londo and Schaal examine the origin of weedy rice (Oryza sativa) populations in the USA. Analysing nuclear DNA sequence and microsatellite data, they show the importance of parallel evolution, hybridization, gene flow, and migration in the evolution of these weeds.     

Islamic faith as a cultural dimension to ethnic relations

Ralph Grillo, 2015 Muslim Families, Politics and the Law. A Legal Industry in Multicultural Britain. Farnham: Ashgate, xvi + 337 pp. £75 (hardback) ISBN 978-1-4724-5121-7

John R Bowen, 2010 Can Islam Be French? Pluralism And Pragmatism in a Secularist State, Princeton: Princeton University Press, xi + 230 pp. $23.95 (paperback) ISBN978-0691-13283-9

John R Bowen, 2012 Blaming Islam. Cambridge: MIT Press, 144 pp. $15.95 (paperback) ISBN 978262017589     

Molecular clocks underlying vertebrate embryo segmentation: A 10-year-old hairy-go-round

Segmentation of the vertebrate embryo body is a fundamental developmental process that occurs with strict temporal precision. Temporal control of this process is achieved through molecular segmentation clocks, evidenced by oscillations of gene expression in the unsegmented presomitic mesoderm (PSM, precursor tissue of the axial skeleton) and in the distal limb mesenchyme (limb chondrogenic precursor cells). The first segmentation clock gene, hairy1, was identified in the chick embryo PSM in 1997. Ten years later, chick hairy2 expression unveils a molecular clock operating during limb development. This review revisits vertebrate embryo segmentation with special emphasis on the current knowledge on somitogenesis and limb molecular clocks. A compilation of human congenital disorders that may arise from deregulated embryo clock mechanisms is presented here, in an attempt to reconcile different sources of information regarding vertebrate embryo development. Challenging open questions concerning the somitogenesis clock are presented and discussed, such as When?, Where?, How?, and What for? Hopefully the next decade will be equally rich in answers. Birth Defects Research (Part C) 81:65–83, 2007. © 2007 Wiley‐Liss, Inc.     

Monkeying around with ploidy

Inferences of whole genome duplication (WGD) events accompany the annotation of every newly sequenced plant genome, but much remains unknown about the evolutionary processes and pathways relating to WGD (Soltis et al. 2010). What ecological, biogeographical and genetic factors cause WGD to occur in nature? How does WGD affect gene expression? How do genomes evolve after WGD? New species that have arisen recently through WGD are good places to seek answers to such questions. These could be relatively common in nature, but reliably demonstrating their recent origin requires documentary evidence, which can be very hard to come by. Thus far, records of species introductions and meticulous botanizing have demonstrated six new natural allopolyploids in just four genera: Tragopogon miscellus and T. mirus, Senecio cambrensis and S. eboracensis, Spartina anglica and Cardamine schultzii (Abbott & Rieseberg 2012; Ainouche et al. 2009; Soltis & Soltis 2009). It is risky to generalize about a universal feature of plant evolution from such a small sample; more examples are needed, in different genera. It is therefore of considerable interest that Mario Vallejo‐Marin of University of Stirling has this year named a new allopolyploid species of monkey flower, Mimulus peregrinus, and presented evidence that it is <140 years old (Vallejo‐Marin 2012). This discovery is particularly timely as the monkey flower genus is developing rapidly as a model system for ecological genetics (Wu et al. 2008), and in the current issue of Molecular Ecology, Jennifer Modliszewski and John Willis of Duke University present new data showing high genetic diversity in another recently discovered monkey flower allopolyploid, M. sookensis (Modliszewski & Willis 2012).     

Fifteen compelling open questions in plant cell biology

As scientists, we are at least as excited about the open questions—the things we do not know—as the discoveries. Here, we asked 15 experts to describe the most compelling open questions in plant cell biology. These are their questions: How are organelle identity, domains, and boundaries maintained under the continuous flux of vesicle trafficking and membrane remodeling? Is the plant cortical microtubule cytoskeleton a mechanosensory apparatus? How are the cellular pathways of cell wall synthesis, assembly, modification, and integrity sensing linked in plants? Why do plasmodesmata open and close? Is there retrograde signaling from vacuoles to the nucleus? How do root cells accommodate fungal endosymbionts? What is the role of cell edges in plant morphogenesis? How is the cell division site determined? What are the emergent effects of polyploidy on the biology of the cell, and how are any such “rules” conditioned by cell type? Can mechanical forces trigger new cell fates in plants? How does a single differentiated somatic cell reprogram and gain pluripotency? How does polarity develop de-novo in isolated plant cells? What is the spectrum of cellular functions for membraneless organelles and intrinsically disordered proteins? How do plants deal with internal noise? How does order emerge in cells and propagate to organs and organisms from complex dynamical processes? We hope you find the discussions of these questions thought provoking and inspiring.

We asked 15 experts to address what they consider to be the most compelling open questions in plant cell biology and these are their questions.     

A critical assessment of the h-index

Editor's suggested further reading in BioEssays: Can we do better than existing author citation metrics? Abstract and Counting citations in texts rather than reference lists to improve the accuracy of assessing scientific contribution Abstract     

Forecasting the pattern and pace of Fagus forest expansion in Majella National Park,Italy

Question: Can the pattern and pace of spontaneous Fagus forest expansion from 1975 to 2003 be accurately detected with mid‐resolution satellite imagery? Can the historical Fagus expansion be modelled on the basis of environmental predictors? If so, where are the highest probabilities for future Fagus expansion? What are the implications for park management? Location: Majella National Park, Italy, > 1000 m a.s.l.; municipalities of S. Eufemia and Pacentro. Methods: Fagus cover change was detected by overlaying three classified sequential satellite images. Historical Fagus expansion was related to environmental variables using ordinary logistic and autologistic regression models. Fagus expansion probabilities were generated with the best predictive model. Results: From 1975 to 2003 Fagus advanced into abandoned farmland and subalpine pastures from the contiguous, midaltitudinal Fagus forest and from Fagus outliers, at a rate of 1.2 % per year. Substantial spatial and temporal variations in expansion rates were detected. The ordinary and autologistic models based on the single predictor Distance‐from‐Fagus‐1975 forecasted the Fagus expansion well (AUC 0.81 resp. 0.88). Multiple logistic models, including the topo‐climatic and substrate predictors, improved prediction insignificantly. The strong predictive power of proximity to historical Fagus presence is explained by the dispersal biology of Fagus combined with the shading impact of the Fagus canopy at the forest fringe. Conclusion: Decade‐long Fagus expansion patterns might be reliably forecasted by proximity to historical Fagus distribution. Consequences for park management options are outlined.     

Vegetation transition following drainage in a high‐latitude hyper‐oceanic ecosystem

Questions: How does draining affect the composition of vegetation? Are certain functional groups favoured? Can soil parameters explain these differences? Location: Central Faroe Islands, treeless islands in the northern boreal vegetation zone. Since 1987, an area of 21 km² at 100–200 m a.s.l. was drained in order to provide water for hydro‐electric production. Method: Vegetation and soil of a drained area and a control, undrained neighbouring area of approximately the same size were sampled in 2007. Six sites were sampled in each area. The vegetation was classified with cluster analysis. Results: Four plant communities were defined in the area: Calluna vulgaris–Empetrum nigrum–Vaccinium myrtillus heath, Scirpus cespitosus–Eriophorum angustifolium blanket mire, Carex bigelowii–Racomitrium lanuginosum moss‐heath, Narthecium ossifragum–Carex panacea mire. Heath was more extensively distributed within, and was the dominant community of the drained area, whereas moss‐heath was more extensive in the undrained area. Blanket mire and mire had approximately the same distribution in both areas. For the blanket mire, species composition indicated drier conditions in the drained than in the undrained area. The drained area had higher frequencies of woody species and lichens, grasses had finer roots and available soil phosphate was considerably higher, whereas the undrained area had higher frequencies of grasses and sedges. Conclusion: The dominant plant communities were different in the two areas, which indicated that the blanket mire was drying in the drained area. Higher concentration of soil phosphate in the drained area also indicated increased decomposition of organic soils owing to desiccation.     

Population dynamics of four understorey shrub species in beech forest

Question: In the population dynamics of four understorey shrub species (Hp, Hydrangea paniculata Sieb, et Zucc.; Lu, Lindera umbellata Thunb. var. membranacea (Maxim.) Momiyama; Ms, Magnolia salicifolia (Sieb, et Zucc.) Maxim.; Vf, Viburnum furcatum Blume ex Maxim.), (1) What is the relative importance of seedling regeneration versus vegetative growth? (2) Can these shrubs persist stably for a long time in the understorey? (3) What kind of variation in demographic features is observed among these shrubs? Location: 780m a.s.l., north‐eastern Japan. Methods: Population dynamics were analyzed by using stage‐classified matrix models. Models were mainly constructed from five years stem‐census data, including current‐year seedlings and sprouts. Results: Current‐year sprouts emerged every year in every species. Current‐year seedlings emerged every year in Lu and Vf, but densities were very low. In every species, population growth rate (A) was close to the equilibrium value 1.0 and no statistical difference was found among species. The stable stage‐distribution predicted from the matrix model was similar to the observed distribution for Lu, Ms and Vf, but much different for Hp. Elasticity matrix was also similar among Lu, Ms and Vf, but was quite different for Hp. Conclusions: Lu, Ms and Vf were considered as climax shrubs that can regenerate and maintain their population stably in the understorey, even if canopy gaps form infrequently. Hp is a pioneer shrub that require more frequent formation of canopy gaps for long‐term persistence in the understorey.     

A geometric morphometric approach for disparity of the sulcus acusticus of sagitta in species of Gerreidae (Teleostei: Perciformes)

This paper explores shape disparity in the sulcus acusticus of saccular otolith using geometric morphometric methods in selected Gerreidae species. First, multivariate linear regressions between size (CS-log-transformed) and shape were implemented to uncover allometry in the variation of the sulcus acusticus at three levels: intraspecific, intrageneric, and interspecific. Second, we assessed species disparity to investigate if differences in disparity are associated with three biologically contrasting ecological or historical processes within the family. Specifically, we asked: (1) How has disparity changed as a result of an ecological shift from marine to freshwater habitat? (2) How has disparity changed in genera with increasing taxonomic richness? and (3) How did a vicariant event across the Panama isthmus changed disparity in a pair of sister species? Our results indicate that the disparity of the sulcus acusticus shape of the single freshwater species (Eugerres mexicanus) is in the middle of the range of values of the 17 marine species compared. This suggests that the change to a freshwater environment did not influence the variability of the sulcus acusticus. In the taxonomic comparisons, as expected, disparity is lowest in the monotypic Deckertichthys, while it increases with species number in Diapterus. In the vicariant pair, the Pacific basin species (Diapterus brevirostris) has a disparity value almost twice the value than in the Atlantic taxon (D. rhombeus). It remains to be investigated if the same disparity patterns documented here are associated to marine-freshwater ecological shifts and vicariant events in other fish families.

     

'Escentric' molecules

Can a fragrance be revolutionary? In this commentary, the creation of two unusual, extravagant fine fragrances, ‘escentr?c01’ and ‘molecule01’, is described. In response to the fantasy components found in release notes of many recent perfume launches, both center around a single real fragrance raw material, the transparent woody aroma chemical ‘Iso E Super’ ( 1 + 2 ). The perfume ‘escentr?c01’ contains 65% of it, accompanied by Trisamber ( 3 ), red pepper, lime oil, incense and musks, while ‘molecule01’ consists exclusively of ‘Iso E Super’ ( 1 + 2 ). The elegant woody note lives here its own eccentric life – the revolution starts.     

Carbon allocation in forest ecosystems

Carbon allocation plays a critical role in forest ecosystem carbon cycling. We reviewed existing literature and compiled annual carbon budgets for forest ecosystems to test a series of hypotheses addressing the patterns, plasticity, and limits of three components of allocation: biomass, the amount of material present; flux, the flow of carbon to a component per unit time; and partitioning, the fraction of gross primary productivity (GPP) used by a component. Can annual carbon flux and partitioning be inferred from biomass? Our survey revealed that biomass was poorly related to carbon flux and to partitioning of photosynthetically derived carbon, and should not be used to infer either. Are component fluxes correlated? Carbon fluxes to foliage, wood, and belowground production and respiration all increased linearly with increasing GPP (a rising tide lifts all boats). Autotrophic respiration was strongly linked to production for foliage, wood and roots, and aboveground net primary productivity and total belowground carbon flux (TBCF) were positively correlated across a broad productivity gradient. How does carbon partitioning respond to variability in resources and environment? Within sites, partitioning to aboveground wood production and TBCF responded to changes in stand age and resource availability, but not to competition (tree density). Increasing resource supply and stand age, with one exception, resulted in increased partitioning to aboveground wood production and decreased partitioning to TBCF. Partitioning to foliage production was much less sensitive to changes in resources and environment. Overall, changes in partitioning within a site in response to resource supply and age were small (<15% of GPP), but much greater than those inferred from global relationships. Across all sites, foliage production plus respiration, and total autotrophic respiration appear to use relatively constant fractions of GPP – partitioning to both was conservative across a broad range of GPP – but values did vary across sites. Partitioning to aboveground wood production and to TBCF were the most variable – conditions that favored high GPP increased partitioning to aboveground wood production and decreased partitioning to TBCF. Do priorities exist for the products of photosynthesis? The available data do not support the concept of priorities for the products of photosynthesis, because increasing GPP increased all fluxes. All facets of carbon allocation are important to understanding carbon cycling in forest ecosystems. Terrestrial ecosystem models require information on partitioning, yet we found few studies that measured all components of the carbon budget to allow estimation of partitioning coefficients. Future studies that measure complete annual carbon budgets contribute the most to understanding carbon allocation.     

A phytosociological classification of Swiss mire vegetation

The mapping and monitoring of Swiss mires has so far relied on a classification system based on expert judgement, which was not supported by a quantitative vegetation analysis and which did not include all wetland vegetation types described in the country. Based on a spatially representative sample of 17,608 relevés from 112 Swiss mires, we address the following questions: (1) How abundant are wetland vegetation types (phytosociological alliances) in Swiss mires? (2) How are they distributed across the country––is there a regional pattern? (3) How clearly are they separated from each other? (4) How clear and reliable is their ecological interpretation? Using published wetland vegetation relevés and lists of diagnostic species for phytosociological units (associations and alliances) established by experts, we developed a numerical method for assigning relevés to units through the calculation of similarity indices. We applied this method to our sample of 17,608 relevés and estimated the total area covered by each vegetation type in Switzerland. We found that vegetation types not included in previous mapping were either rare in Switzerland (partly due to mire drainage) or poorly distinguished from other vegetation units. In an ordination, the Swiss mire vegetation formed a triangular gradient system with the Sphagnion medii, the Caricion davallianae and the Phragmition australis as extreme types. Phytosociological alliances were clearly separated in a subset of 2,265 relevés, which had a strong similarity to one particular association, but poorly separated across all relevés, of which many could not be unequivocally assigned to one association. However, ecological gradients were reflected equally well by the vegetation types in either case. Overall, phytosociological alliances distinguished until now proved suitable schemes to describe and interpret vegetation gradients. Nevertheless, we see the urgent need to establish a data base of Swiss wetland relevés for a more reliable definition of some vegetation units.     

Segmental identity and cerebellar granule cell induction in rhombomere 1

Background  

Cerebellar granule cell precursors are specifically generated within the hindbrain segment, rhombomere 1, which is bounded rostrally by the midbrain/hindbrain isthmus and caudally by the boundary of the Hoxa2 expression domain. While graded signals from the isthmus have a demonstrable patterning role within this region, the significance of segmental identity for neuronal specification within rhombomere 1 is unexplored. We examined the response of granule cell precursors to the overexpression of Hoxa2, which normally determines patterns of development specific to the hindbrain. How much does the development of the cerebellum, a midbrain/hindbrain structure, reflect its neuromeric origin as a hindbrain segment?     

Ordovician Bathyal Trace Fossils From Metasiliciclastics in Central Norway and Their Sedimentological and Paleogeographical Implications

Numerous trace fossils are recognized in metasiliciclastic rocks of the Lower-Middle Ordovician Lower Hovin Group, Upper Ordovician Ekne Group and on roofing slates from an unknown locality (probably Ordovician) from the Trondheim region, central Norway. The trace fossil assemblages are dominated by meandering pascichnial forms, i.e., Helminthoidichnites in the Lower Hovin Group and Helminthoidichnites and Nereites in the slates. Protovirgularia, Dictyodora, ?Planolites and ?Palaeophycus are less common. Alcyonidiopsis, ?Trichophycus, Chondrites, cf. Chondrites, Gordia, ?Phycodes, ?Helminthopsis, cf. Naviculichnium, Treptichnus, Saerichnites, Megagrapton and ?Paleodictyon (Squamodictyon) are rare. The trace fossils were collected or observed at 17 different localities and represent assemblages belonging to the Nereites ichnofacies (deep-sea flysch deposits with thinly bedded turbidites). They reflect a distal Nereites subfacies (fan-fringe or basin-plain deposits) transitional to a Nereites/Paleodictyon subfacies (proximal fan facies). The trace fossil assemblages indicate an opportunistic style of colonization related to fluctuations in food supply introduced by turbidity currents.