Well-Being: A Theoretical Program

A theoretical program of anthropological well-being is described and a special theory linking adaptive potential to biocultural success, longevity, and physical health is tested with a multicultural sample of 133 college students born outside, the United States. Those students who scored high in adaptive potential reported fewer symptoms of physical illness. The implications of the theory for a better understanding of cultural dynamics are discussed.     

Neuroimmunology: Theoretical and clinical aspects

In this article, we discuss the aspects of neuroimmune interactions in various pathological processes, such as cerebral (including lateralized) ischemia (experimental and clinical data), the demyelinating process in the central nervous system (CNS) in patients with multiple sclerosis, and secondary immunodeficiency. The original and published data are considered, and approaches to the substantiation of immunocorrection and neuroimmunotherapy in CNS pathologies are given.     

Foraging behavior of ants: Theoretical considerations

This paper describes models of behavior for two ant species recruiting to very different sorts of resource. One species, Solenopsis geminata, recruits to sugar solution. The other, Pogonomyrmex occidentalis, recruits to patches of seeds. The models clarify the assumptions entering into the theoretical analysis of these behaviors and point to measurements that should be made for their experimental analysis.Both models assume that the colony gains energy when a forager gets a load of resource. Energy is lost during the trip to a patch of resource in a manner dependent upon the current physical conditions of the environment. The only factor counterbalancing an ever increasing net energy gain when the recruitment rates are increased is interference among workers at a patch. As the rate of recruitment is elevated this interference decreases the efficiency with which the resource can be used and, thus, sets an optimum at some intermediate rate of recruitment.The limitation of considerations in this paper to energetic efficiency is discussed and justified in terms of components of fitness and ant physiology. It is found that several qualitative predictions can be experimentally tested, but that quantitative predictions require fine measurement of metabolic costs to individual foragers and of complicated gains to the colony as a whole. Both models can be differentiated experimentally from corresponding time minimization models.     

Enzyme-gas chromatography: Theoretical and experimental aspects

A method based on the production of gas by enzymes was developed to determine the concentration of amino acids. The enzyme was immobilized by coreticulation on the external surface of a capillary silicone tube. The gas produced diffused through the silicone membrane to the lumen of the tube and was carried by a vector gas to a gas chromatograph. The amount of measured gas has been shown to be a function of the amino acid concentration. A model of the system that gave good agreement between experimental and calculated values was developed.     

Book Reviews: General/Theoretical Anthropology

Book reviewed in this article:
Ecstasy, Ritual, and Alternate Reality: Religion in a Pluralistic World . Felicitas D. Goodman
Religious Worlds: The Comparative Study of Religion . William E. Paden     

Theoretical molecular biology: prospectives and perspectives

I briefly discuss some aspects of theoretical molecular biology. Specifically, I include the issues of searches for homologies via string matchings, for patterns of specific nucleotide groupings and of sequence-structure relationship. The various approaches developed in order to achieve this end are described, attempting to convey some of the excitement in this quickly growing field.     

Parameter Identifiability and Redundancy: Theoretical Considerations

Background

Models for complex biological systems may involve a large number of parameters. It may well be that some of these parameters cannot be derived from observed data via regression techniques. Such parameters are said to be unidentifiable, the remaining parameters being identifiable. Closely related to this idea is that of redundancy, that a set of parameters can be expressed in terms of some smaller set. Before data is analysed it is critical to determine which model parameters are identifiable or redundant to avoid ill-defined and poorly convergent regression.

Methodology/Principal Findings

In this paper we outline general considerations on parameter identifiability, and introduce the notion of weak local identifiability and gradient weak local identifiability. These are based on local properties of the likelihood, in particular the rank of the Hessian matrix. We relate these to the notions of parameter identifiability and redundancy previously introduced by Rothenberg (Econometrica 39 (1971) 577–591) and Catchpole and Morgan (Biometrika 84 (1997) 187–196). Within the widely used exponential family, parameter irredundancy, local identifiability, gradient weak local identifiability and weak local identifiability are shown to be largely equivalent. We consider applications to a recently developed class of cancer models of Little and Wright (Math Biosciences 183 (2003) 111–134) and Little et al. (J Theoret Biol 254 (2008) 229–238) that generalize a large number of other recently used quasi-biological cancer models.

Conclusions/Significance

We have shown that the previously developed concepts of parameter local identifiability and redundancy are closely related to the apparently weaker properties of weak local identifiability and gradient weak local identifiability—within the widely used exponential family these concepts largely coincide.     

Polymerization on the Rocks: Theoretical Introduction

It is difficult if not impossible to synthesize long polymers of amino acids, nucleotides, etc., in homogeneous aqueous solution. We suggest that long polymers were synthesized on the surface of minerals in a prebiotic process analogous to solid-phase synthesis. Provided that the affinity of a mineral for an oligomer increases with the length of the oligomer, adsorption must become essentially irreversible for sufficiently long oligomers. Irreversibly adsorbed oligomers may be elongated indefinitely by repeated cycles in which the mineral with its adsorbed oligomers is first incubated with activated monomers and then washed free of deactivated monomer and side-products. We discuss in some detail the formation of oligomers of negatively-charged amino acids such as glutamic acid on anion-exchange minerals such as hydroxylapatite or illite. We show that the average length of adsorbed oligomers at steady state, n, depends on the balance between the rate of chain elongation and the rate of hydrolysis, and we derive a very approximate formula for n.     

Bragg-Scattered Surface Plasmon Microscopy: Theoretical Study

We present a new approach to surface plasmon microscopy with high refractive index sensitivity and spatial resolution that is not limited by the propagation length of surface plasmons. It is based on a nanostructured metallic sensor surface supporting Bragg-scattered surface plasmons. We show that these non-propagating surface plasmon modes are excellently suited for spatially resolved observations of refractive index variations on the sensor surface owing to their highly confined field profile perpendicular to as well as parallel to the metal interface. The presented theoretical study reveals that this approach enables reaching similar refractive index sensitivity as regular surface plasmon resonance (SPR) microscopy and offers the advantage of improved spatial resolution when observing dielectric features with lateral size <10???m for the wavelength around 800?nm and gold as the SPR-active metal. This paper demonstrates the potential of Bragg-scattered surface plasmon microscopy for high-throughput SPR biosensing with high-density microarrays.     

Active Nucleosome Displacement: A Theoretical Approach

Three-quarters of eukaryotic DNA are wrapped around protein cylinders forming so-called nucleosomes that block the access to the genetic information. Nucleosomes need therefore to be repositioned, either passively (by thermal fluctuations) or actively (by molecular motors). Here we introduce a theoretical model that allows us to study the interplay between a motor protein that moves along DNA (e.g., an RNA polymerase) and a nucleosome that it encounters on its way. We aim at describing the displacement mechanisms of the nucleosome and the motor protein on a microscopic level to understand better the intricate interplay between the active step of the motor and the nucleosome-repositioning step. Different motor types (Brownian ratchet versus power-stroke mechanism) that perform very similarly under a constant load are shown to have very different nucleosome repositioning capacities.     

Metachromasy: An Experimental and Theoretical Reevaluation

Non-chromotropic substances such as fibrin and gelatin and most tissue and cellular structures stain orthochromatically with internal dye concentrations of such metachromatic dyes as methylene blue and toluidine blue which, if in solution, would be metachromatic. Therefore, at ordinary levels of staining these substances depress the natural tendency of these dyes to change color. However, at elevated levels of dye-binding metachromasy eventually occurs. This phenomenon is explained on the basis of the distribution of dye-binding sites. In these substrates, by contrast with chromotropic substances, many binding sites are too far removed for dye interaction, consequently the interaction frequency can become high enough to produce a color change only as saturation of the available sites is approached. It is also shown that the destruction of color is a characteristic of metachromasy and that water molecules intercalated between approximated dye ions are responsible for the loss and change of color. A concept of metachromasy is proposed in which the interaction between water molecules and suitably approximated dye ions plays an essential role. The experimental studies are described against a background of the history and evolution of ideas on metachromasy. The literature is reviewed and reassessed particularly from the physicochemical viewpoint.