Carbon accumulation in a raised bog

Summary Laboratory measurements on the CO₂ exchange and data on actual field temperatures and irradiation were used to compute (by simulation) an annual carbon budget for the Empetrum nigrum/Sphagnum fuscum community. A net fixation of 160 g CO₂ m^-2 was predicted for the growing season. This was already the figure at the beginning of July, after which no significant change occured. For one day in June (when CO₂ exchange was most intense), estimates of c. 10 and 7 g CO₂ m^-2 for total photosynthesis and total respiration were derived, respectively. The annual net result is in accordance with earlier estimates of production and carbon accumulation in similar ecosystems, thereby partly validating the model. Radical changes in the annual peat production are to be expected, if the mean temperature changes even one or two Celsius degrees; an increase of 2° C resulted in an equilibrium in the carbon flow between bog and atmosphere (i.e. no net change in the carbon content of the bog).     

Nitrogen-fixing activity in peat soils from a raised bog

The nitrogenase (acetylene reductase) activity in monolithic and minced peat samples was found to be low, no more than 0.014-0.022 mg N/(kg h). Incorporation of the 15N2 isotope into organic compounds of peat soil was from 2.71-8.13 mg N/kg over 15 days. The nitrogen-fixing activity was the highest in a 10-20 cm layer of soil and much lower in the upper (under green moss) and deeper (20-30 cm) layers. The addition of glucose to soil samples stimulated nitrogen fixation considerably after 18-26 h. The maximum nitrogenase activity (3.5-3.8 mg N/(kg h)) observed after 60-70 h coincided with the peak of respiratory activity. A repeated addition of glucose after its exhaustion increased nitrogenase activity without a lag period to 8.5 mg N/(kg h). Investigation of the effect of environmental factors (temperature, pH, aeration, and light intensity) on potential nitrogen-fixing activity in peat samples revealed that nitrogen fixation could proceed in a wide range of pH values (from 3.0 to 7.5) and temperatures (from 5 to 35 degrees C). The nitrogen-fixing bacteria belonging to different trophic groups were enumerated by using nitrogen-free media with pH values and mineralization levels close to those in situ. In samples of peat soil, diazotrophic methanol-utilizing bacteria prevailed (2.0-2.5 x 10(6) cells/g); the second largest group was facultatively anaerobic bacteria of the family Enterobacteriaceae.     

The Bourtanger Moor: endurance and vulnerability of a raised bog system

From the study of a raised bog complex in the former Bourtanger Moor in the northeastern Netherlands, which was formed between ca. 4500 BC and 1700 AD, it is clear that raised bogs are both very robust and vulnerable systems, which can develop within fairly broad climatological limits, but that they are also extremely sensitive to the effects of drainage caused by reclamation carried out by man. By means of good management, aimed primarily at restoring the typical ombrogenous hydrological system, in all likelihood it will be possible to develop the growth of raised bog in nature reserves suitable for this purpose, namely peat-bog relicts.     

Reconstitution of biochemically altered nuclear pores: transport can be eliminated and restored

Biochemically altered nuclear pores specifically lacking the N-acetylglucosamine-bearing pore proteins were constructed in a nuclear assembly extract in order to assign function to these proteins. The depleted pores do not bind nuclear signal sequences or actively import nuclear proteins, but they are functional for diffusion. These defects can be fully repaired by assembly with readded Xenopus pore glycoproteins. Strikingly, isolated rat pore glycoproteins also restore transport. Electron microscopy reveals that depleted pores have largely normal morphology. Thus, the pore glycoproteins are not required for assembly of the nuclear envelope, the major structures of the pore, or a pore diffusional channel. Instead, they are essential for active protein import and, unexpectedly, for construction of the part of the pore necessary for signal sequence recognition.     

Diurnal and seasonal variation of carbon dioxide exchange from a former true raised bog

Carbon dioxide exchange was measured, using the eddy covariance technique, during a one and a half year period in 1994 and 1995. The measurements took place over a former true raised bog, characterized by a shallow peat layer and a vegetation dominated by Molinia caerulea. The growing season extended from May until late October, with a maximum LAI in August of 1.7. The carbon balance shows a net release of 97 g C m^–2 y^–1 (265 kg C ha^–1 y^–1) from the peat bog ecosystem to the atmosphere. During June, July and August there is net consumption of CO₂, while during the rest of the year there is net production of CO₂. The average daytime assimilation rates ranged between – 0.2 and – 0.5 mg CO₂ m^–2 s^–1 (– 45 and –11.3 μmol CO₂ m^–2 s^–1), in a period where the LAI ranged between 1 and 1.7. A high vapour pressure deficit (> 15 hPa) corresponding with high temperatures was found to reduce the assimilation rate by on average 50%. Apart from these factors, LAI and the soil temperature codetermine the net exchange of CO₂. The total nocturnal respiration during the growing season lies within the same order as the average daytime net assimilation rate. Temperature was found to be the main factor controlling soil respiration, with a Q₁₀ of 4.8.     

Methanogen communities and Bacteria along an ecohydrological gradient in a northern raised bog complex

Mires forming an ecohydrological gradient from nutrient-rich, groundwater-fed mesotrophic and oligotrophic fens to a nutrient-poor ombrotrophic bog were studied by comparing potential methane (CH(4)) production and methanogenic microbial communities. Methane production was measured from different depths of anoxic peat and methanogen communities were detected by detailed restriction fragment length polymorphism (RFLP) analysis of clone libraries, sequencing and phylogenetic analysis. Potential CH(4) production changed along the ecohydrological gradient with the fens displaying much higher production than the ombrotrophic bog. Methanogen diversity also decreased along the gradient. The two fens had very similar diversity of methanogenic methyl-coenzyme M reductase gene (mcrA), but in the upper layer of the bog the methanogen diversity was strikingly lower, and only one type of mcrA sequence was retrieved. It was related to the Fen cluster, a group of novel methanogenic sequences found earlier in Finnish mires. Bacterial 16S rDNA sequences from the fens fell into at least nine phyla, but only four phyla were retrieved from the bog. The most common bacterial groups were Deltaproteobacteria, Verrucomicrobia and Acidobacteria.     

Emergence phenology and ecology of aquatic and semi-terrestrial insects on a boreal raised bog in Central Finland

Emergence of peatland insects was studied in Central Finland by sampling insects on a raised bog with tent traps from five different surfaces: muddy hollow without vegetation; hollow covered with Sphagnum ; deep (0.7–0.9 m) open-water pool; shallow (about 0.3 m) pool with bottom covered by Carex vegetation; shallow (about 0.3 m) pool with bare muddy bottom. The material was collected at two-days intervals from 13 May until 31 August in 1981.
Biomass emerging from the sites varied considerably. In general, aquatic sites were clearly more productive than semi-terrestrial sites. Corrected total biomass values for deep pools, shallow Carex pools, and shallow mud pools were 2.471, 1.066, and 0 514 g m⁻², respectively. The corresponding values for muddy and Sphagnum hollows were 0.208 and 0.236 g m⁻², respectively.
All chironomids, chaoborids and trichopterans from the aquatic sites were identified to species, and their emergence phenology and habitat preferences are discussed. 14 species were considered as eurytopic littoral species, 9 species showed strong preference for the bog pools or polyhumic lakes, and 8 species were of diverse origin. Differences in emergence patterns and habitat preferences are probably connected with species-specific resistances to freezing and oxygen and nutrient requirements. The role of emerging insects in the peatland food webs, especially as food for breeding birds, is briefly discussed.     

Moorland pools as refugia for endangered species characteristic of raised bog gradients

In intact raised bog landscapes transitions from ombrotrophic into minerotrophic conditions occur. These gradients are lost from many bogs due to peat harvesting and drainage, and are difficult to restore. To determine which endangered species are characteristic of pristine raised bog gradients and their current status in degraded bogs, plants and macroinvertebrates were surveyed in Estonian intact raised bogs and Dutch degraded bog remnants. Dutch national distribution data were used to determine whether communities with these species occurred outside bog habitats. Water chemistry data were used to describe associated environmental conditions. Intact bog gradients were the preferred habitat for six plant species and fifteen macroinvertebrate species, all of which are endangered. In degraded bogs these species were scarce or not recorded. In intact bogs these species lived at sites where runoff from the bog massif came into contact with regional ground water resulting in a gradient in pH, alkalinity, Ca, Fe and ionic ratio. Analysis of Dutch national distribution data revealed aggregations of these endangered species in moorland pools. These pools contained water chemistry gradients similar to those found in pristine bogs, which occurred at sites were groundwater seepage and stream water came in contact. In the past, stream water has been used to increase pH and trophic status of moorland pools facilitating fisheries. Today, this practice offers a conservation strategy for the protection of endangered species for which no short-term alternatives are available.     

Rhicadhesin-mediated attachment and virulence of an Agrobacterium tumefaciens chvB mutant can be restored by growth in a highly osmotic medium.

Cyclic beta-1,2-glucan is considered to play a role in osmoadaptation of members of the family Rhizobiaceae in hypotonic media. Agrobacterium tumefaciens chvB mutants, lacking beta-1,2-glucan, exhibit a pleiotropic phenotype, including nonmotility, attachment deficiency, and avirulence. Here we report that by growth of chvB mutant cells in tryptone-yeast extract medium supplemented with 7 mM CaCl2 and 100 mM NaCl, the mutant cells become motile, attach to pea root hair tips, and are virulent on Kalanchoë leaves. Moreover, whereas chvB mutants grown in tryptone-yeast extract medium containing 7 mM CaCl2 do not produce active rhicadhesin, addition of 100 mM NaCl to this medium resulted in restoration of rhicadhesin activity. The presence of CaCl2 appeared to be required for attachment, virulence, and activity of rhicadhesin. The results support a role for cyclic beta-1,2-glucan in osmoadaptation and strengthen the notion that rhicadhesin is required for attachment and virulence of A. tumefaciens.     

Mammals reduce methionine-S-sulfoxide with MsrA and are unable to reduce methionine-R-sulfoxide, and this function can be restored with a yeast reductase

Methionine is an essential amino acid in mammals at the junction of methylation, protein synthesis, and sulfur pathways. However, this amino acid is highly susceptible to oxidation, resulting in a mixture of methionine-S-sulfoxide and methionine-R-sulfoxide. Whether methionine is quantitatively regenerated from these compounds is unknown. Here we report that SK-Hep1 hepatocytes grew on methionine-S-sulfoxide and consumed this compound by import and methionine-S-sulfoxide reductase (MsrA)-dependent reduction, but methionine-R-sulfoxide reductases were not involved in this process, and methionine-R-sulfoxide could not be used by the cells. However, SK-Hep1 cells expressing a yeast free methionine-R-sulfoxide reductase proliferated in the presence of either sulfoxide, reduced them, and showed increased resistance to oxidative stress. Only methionine-R-sulfoxide was detected in the plasma of wild type mice, but both sulfoxides were in the plasma of MsrA knock-out mice. These results show that mammals can support methionine metabolism by reduction of methionine-S-sulfoxide, that this process is dependent on MsrA, that mammals are inherently deficient in the reduction of methionine-R-sulfoxide, and that expression of yeast free methionine-R-sulfoxide reductase can fully compensate for this deficiency.     

Avian coccidiosis: a disturbed host-parasite relationship to be restored

The co-evolution of Eimeria and its host the domestic chicken has resulted in a delicate balance of mutual understanding and respect. This balance has been broken by the complete change of the environment in which the parasite was able to reproduce to such an extent that the host, stressed and weakened by heat, crowding and concurrent infections could not combat the shear numbers of organisms. The use of drugs to control the situation has been shown to only temporarily create relief. Resistance widely developed by the flexible genome of the parasite returned new drugs at a greater speed than they had been developed. Improved hygienic measures, better facility management and good understanding of epidemiology of the parasites spreading and proliferation seem the first and most promising set of tools to control the balance. Reduction of stock density may only provide any relief if this is done at a factor of 10 or higher and this is not a realistic measure in relation to the profit. Free-range chickens are an alternative if only animal welfare is at stake. However, in terms of prevalence of parasitic infections, such as coccidia, helminthes or ectoparasites, chickens do not seem to be better off (Permin et al., 2002). Immunological surveillance and the development of safe, effective and economical vaccines are further refinements that can be used to restore the relationship between parasite and host. Several live vaccines are effective and applied, but certainly have drawbacks in safety and production. New technology such as recombinant vectors together with a better understanding of the cell biology of the parasite from biological and genomic information should provide improved vaccines for the future. The strong genetically determined characteristics involved in the induction and maintenance of a sustainable protective immune response might turn out to be of decisive importance for the success of these strategies. The consequences for the physiology of the parasite remain to be understood.     

CH4 emission from a hollow-ridge complex in a raised bog: The role of CH4 production and oxidation

The aim of this study was to correlate magnitude andcontrols of CH₄ fluxes with the microtopographyand the vegetation in a hollow-ridge complex of araised bog. High CH₄ emission rates were measuredfrom hollows and mud-bottom hollows, while hummocksconsumed atmospheric CH₄ at a low rate. Thehighest emissions were measured from plots with Eriophorum vaginatum and Scheuchzeriapalustris. CH₄ emission ceased after Scheuchzeria had been clipped below the water table,indicating the importance of this aerenchymatic plantas a conduit for CH₄.Peat in the upper catotelm of hollows was younger andless decomposed than in hummocks. Potential CH₄production in vitro was higher and themethanogenic association was better adapted to highertemperatures in hollow than in hummock peat. Highertemperatures in hollows resulted in a strongerCH₄ source in hollows than in hummocks. Negativefluxes from hummocks indicated that even in wetlandsmethanotrophic bacteria exist that are able to oxidizeCH₄ at atmospheric mixing ratios, and thatoxidation controls CH₄ emission completely. TheCH₄ mixing ratio was low in the acrotelm, but itincreased within the catotelm. Comparing fluxesmeasured in static chambers with fluxes calculatedfrom the porewater CH₄ profiles it was deducedthat the zone of methane oxidation was located closeto the water table.In hollows, CH₄ production at in situtemperature was far higher than emission into theatmosphere, corresponding to an oxidation rate ofnearly 99%. The CH₄ flux between the catotelmand the acrotelm of hollows was also higher than theemission, indicating the importance of CH₄oxidation in the aerobic acrotelm, too. CH₄microprofiles showed that CH₄ oxidation inmud-bottom hollows was confined to the topmost 2 mm,and that in Sphagnum-covered hollows CH₄oxidation occurred at the lower edge of green Sphagnum-parts.     

Signal peptidase can cleave inside a polytopic membrane protein

The signal peptides of most proteins targeted to the endoplasmic reticulum are specifically cleaved by signal peptidase. Although potential cleavage sites occur frequently in polytopic proteins after membrane-spanning segments, processing is restricted to the first hydrophobic domain, suggesting that signal peptidase might not have access to subsequently translocated, internal domains. To test this hypothesis, we replaced the third transmembrane segment of an artificial threefold membrane-spanning protein by a sequence which is normally an amino-terminal signal. Upon in vitro translation and insertion into microsomes, efficient cleavage at this sequence was observed, thus demonstrating the ability of signal peptidase to cleave within polytopic membrane proteins.     

Photosynthesis can be enhanced by lateral CO2 diffusion inside leaves over distances of several millimeters

This study examines the extent to which lateral gas diffusion can influence intercellular CO(2) concentrations (c(i)) and thus photosynthesis in leaf areas with closed stomata. Leaves were partly greased to close stomata artificially, and effects of laterally diffusing CO(2) into the greased areas were studied by gas-exchange measurement and chlorophyll fluorescence imaging. Effective quantum yields (Delta F/F(m)') across the greased areas were analysed with an image-processing tool and transposed into c(i) profiles, and lateral CO(2) diffusion coefficients (D(C'lat)), directly proportional to lateral conductivities (), were estimated using a one-dimensional (1D) diffusion model. Effective CO(2) diffusion distances in Vicia faba (homobaric), Commelina vulgaris (homobaric) and Phaseolus vulgaris (heterobaric) leaves clearly differed, and were dependent on D(C'lat), light intensity, [CO(2)], and [O(2)]: largest distances were approx. 7.0 mm for homobaric leaves (with high D(C'lat)) and approx. 1.9 mm for heterobaric leaves (low D(C'lat)). Modeled lateral CO(2) fluxes indicate large support of photosynthesis over submillimeter distances for leaves with low D(C'lat), whereas in leaves with large D(C'lat), photosynthesis can be stimulated over distances of several millimeters. For the plant species investigated, the surplus CO(2) assimilation rates of the greased leaf areas (A(gr)) differed clearly, depending on lateral conductivities of the respective leaves.