Methanogenic community compositions in surface sediment of freshwater aquaculture ponds and the influencing factors

Aquaculture ponds represent ecologically relevant environments to study the community composition and diversity of methanogenic assemblages, as well as their interactions with cultivated species and chemical indicators. In this study, aquaculture ponds with crab (Eriocheir sinensis), oriental river prawn (Macrobrachium nipponense), perch (Micropterus salmonides) and Wuchang fish (Parabramis pekinensis) were sampled, and Illumina high-throughput sequencing was used to investigate the methanogenic communities. The results revealed that the abundant methanogenic orders in surface sediment were Methanomicrobiales, Methanosarcinales and Methanocellales. The relative abundance of Methanocellales was higher in crab and prawn ponds as compared to other ponds. Methanogenic 16S rRNA gene abundance and beta diversity of the community was affected by the cultivated species. Methanogenic communities in aquaculture ponds with higher contents of total nitrogen and organic matter had decreased species richness, while those with higher contents of ammonia and nitrite had an overall decreased abundance of methanogens and their respective diversities. Overall, in addition to the differences in cultivated species, the consequent differences in farming practices including the types and amounts of feeds used, the contents of total nitrogen, organic matter, ammonia and nitrite could all influence the methanogenic community in surface sediment of aquaculture ponds.     

水稻种子的细菌含量和群落结构及其影响因素分析

【目的】种子是植物微生物群代际传递的重要途径,但种子携带的微生物群落尚缺乏系统的研究。本研究以水稻种子为模型,定量分析种子的细菌含量、测定种子的细菌群落结构、探究地域与品种对细菌含量及群落结构的影响和鉴定水稻种子的核心菌群。【方法】选取18个水稻品种,每个品种分别来自中国海南和天津2个地域,共36组样本。每组样本包含5或10个DNA样本,每个DNA样本由3粒种子提取的总DNA构成。使用细菌特异性16S rDNA介导的荧光定量PCR技术测定种子的细菌含量,并分析影响因素;使用16S rDNA扩增子测序技术测定种子的细菌群落结构,并用生物信息学方法分析了影响因素和核心菌群。【结果】本研究测定了1 080粒水稻种子的细菌含量,发现经过表面除菌的水稻种子内部存在共栖细菌,平均每克种子的细菌含量为1.53×10⁶。水稻品种对种子的细菌含量有显著影响,而地域无影响。测定180个扩增子文库的细菌群落结构,发现水稻种子的菌群与水稻植株有相似之处,均以变形菌门为主要的细菌门类;地域对水稻种子的细菌群落结构有重要影响,不同地域的水稻种子在主坐标分析(principal co-ordinate analysis, PCoA)中有明显分离;而粳稻和籼稻之间无显著差异。还发现水稻种子存在核心菌群,且相对丰度高达总菌群的85.56%。【结论】本研究系统地揭示了水稻种子的细菌含量、群落结构及其影响因素,为利用种传微生物促进水稻健康提供了数据和方法支持。     

Environmental factors influencing community composition of gastropods and their trematode parasites in southern Ontario

Agricultural activity and landscape features have previously been associated with diversity and prevalence of trematode species in amphibian second intermediate hosts. In this study, the density, diversity, and size of snail first intermediate hosts, and the diversity and prevalence of their trematode species, were assessed in 2 types of ponds, i.e., those adjacent to cornfields and those from the same region in southwestern Ontario that were adjacent to nonagricultural settings. Species of trematodes included, but were not restricted to, those that are known parasites of larval and adult frogs. We also assessed landscape factors likely to influence use by definitive hosts. Presence of the herbicide atrazine in ponds was measured to check that ponds adjacent to agriculture had potential to be affected by agricultural runoff. Both snail size and the proportion of snails releasing cercariae were greater in nonagricultural ponds, contrasting with a previous finding of lower trematode infection in tadpoles from nonagricultural ponds. Percentage of forest cover was associated with prevalence of certain trematode species, but not with estimates of combined prevalence. Absence of relations of trematode prevalence to measures of road density also contrasted with previous studies. We interpret our results in light of how agricultural activity might influence trematode viability, snail growth, and use by wildlife definitive hosts, independently of landscape factors.     

不同类型景观水体浮游动物群落差异及其影响因素

探明不同类型景观水体中环境敏感型浮游动物群落特征差异及影响因素对景观水体生物多样性维持和水生生态系统保护十分重要。于2014年5月在上海选取具代表性的8个景观水体共设置35个采样点进行浮游动物采样调查,并同步测定水体环境指标。本次调查采集并鉴定浮游动物40种,其中轮虫29种,枝角类7种,桡足类4种。基于浮游动物群落组成进行聚类分析,所有采样点聚为四种景观类型:天然湖泊(淀山湖)、人工湖泊(滴水湖)、AAAA级公园水体(共青森林公园和古猗园)和普通综合性公园水体(世纪公园、和平公园、长风公园和车镜公园)。两种公园水体浮游动物种类较为丰富,多样性较高,各自约有40%的种为生境特有种,而淀山湖特有种仅1种(为猛水蚤),滴水湖3种均为蛭态类。物种相似性方面,大型天然淀山湖与人工滴水湖相似性最高(37.5%),普通公园水体次之(33.3%),与AAAA公园水体相似度最低(20%)。后两者间的相似性较高(27.8%),且两者与滴水湖的相似度均较低(18.5%和12.0%)。四类水体仅有3个共有种/类群:角突臂尾轮虫(Brachionus angularis)、螺形龟甲轮虫(Keratella co...     

极端水文干旱下鄱阳湖浮游动物群落结构特征及其影响因素

2022年鄱阳湖流域发生了特大干旱事件,对鄱阳湖生态环境产生了严重影响。为揭示极端水文干旱年的鄱阳湖浮游动物群落结构特征及其主要影响因素,于2022年1月(冬季)、4月(春季)、7月(夏季)和10月(秋季)对鄱阳湖浮游动物进行了综合调查。本次调查共鉴定出浮游动物70种(轮虫40种、桡足类17种和枝角类13种),丰度和生物量范围分别为0—152.67个/L和0—1.52 mg/L。浮游动物群落结构具有较大的时空差异：在季节上,物种数夏季最多,丰度和生物量呈现夏季最高、秋季最低的特征,干旱季节的Shannon-Wiener多样性指数和优势种组成明显不同于非干旱季节;在空间上,南部湖区的物种数、丰度、生物量高于北部湖区,多样性指数在中部湖区最高、北部湖区最低。极端水文干旱年的物种数、丰度和生物量均明显低于往年同期,但空间上的差异较小。相关性分析和冗余分析结果表明,浮游动物群落结构在干旱季节和非干旱季节的主要影响因素存在明显差异,其中干旱季节浮游动物群落结构主要受水温、水位、硝态氮、氨氮等的共同影响,非干旱季节受化学需氧量和水位的影响较大。总体上,极端水文干旱使得鄱阳湖浮游动物群落结构稳定性较...     

Archaeal diversity and community development in deep-sea hydrothermal vents

Over the past 35 years, researchers have explored deep-sea hydrothermal vent environments around the globe and studied a number of archaea, their unique metabolic and physiological properties, and their vast phylogenetic diversity. Although the pace of discovery of new archaeal taxa, phylotypes and phenotypes in deep-sea hydrothermal vents has slowed recently, bioinformatics and interdisciplinary geochemistry-microbiology approaches are providing new information on the diversity and community composition of archaea living in deep-sea vents. Recent investigations have revealed that archaea could have originated and dispersed from ancestral communities endemic to hydrothermal vents into other biomes on Earth, and the community structure and productivity of chemolithotrophic archaea are controlled primarily by variations in the geochemical composition of hydrothermal fluids.     

阿尔金山自然保护区植物群落生物量和物种多样性的空间格局及其影响因素

以阿尔金山国家级自然保护区的植物群落为研究对象,用样方法调查分析了不同植物群落的物种多样性、生物量的空间格局及其与环境因子间的关系。结果表明:西南高海拔地区主要植被类型为高寒草原,东北低海拔地区主要植被类型为沼泽草甸和高寒草原,西北部中海拔和东南低海拔区域的植被类型则主要为高寒荒漠;植物群落的物种多样性和生物量并未表现出明显的纬度、经度和海拔梯度变化;植物群落的多样性指数与土壤全氮、土壤总碳、土壤有机碳呈显著正相关,与土壤含水量呈极显著正相关;植物生物量与土壤有机碳和土壤含水量呈显著正相关,与土壤全氮呈极显著正相关,与土壤容重呈显著负相关。综上,阿尔金山保护区内植物群落生物多样性与生物量的空间分异是地理因子、土壤因子以及气象条件等综合作用的结果,在保护区尺度上土壤和气象因子对植物群落的影响超过地理因子的影响。     

莲虾共作池塘夏季浮游植物群落及其与环境因子关系

为研究莲虾共作生态系统夏季浮游植物的群落结构特征,于2018年6月至8月对洪湖莲虾共作池塘的浮游植物和水质进行了定量调查监测,并探讨了浮游植物群落结构变化与环境因子之间的关系。结果显示,共鉴定有浮游植物7门71种属,其中绿藻门种类最多,蓝藻门和硅藻门种类次之,三者共占浮游植物总种类数的83.1%。浮游植物优势种有8种,以蓝藻门和绿藻门为主。莲虾共作池塘夏季浮游植物密度和生物量分别变化在2.50×10⁶~6.20×10⁷ cells/L和0.93~24.36 mg/L之间,浮游植物密度总体表现为逐渐升高的趋势,而浮游植物生物量为先升高后降低的趋势,且浮游植物各门的密度、生物量月份间差异不显著(P>0.05)。浮游植物Shannon-Wiener指数和Pielou均匀度指数均以7月最高出现峰值,不具有明显的月份差异(P>0.05);夏季各月的浮游植物多样性指数均较好,表明莲虾共作池塘浮游植物群落结构处于较稳定的状态。冗余分析（RDA）显示养殖期间的浮游植物物种密度受水温（WT）、总氮（TN）、氨氮（NH₄ ⁺—N）、高锰酸钾指数（COD_Mn）等多种环境因子的影响,而影响莲虾共作池塘各月浮游植物分布的关键环境因子是WT、NH₄ ⁺—N、TN。     

鱼池生态系统中影响浮游细菌生长制约因素的研究

从溶解有机质及营养盐对细菌生长、细菌利用和矿化营养物质的影响,细菌捕食者和水温对细菌生长的影响等方面就鱼池生态系内影响细菌生长的主要制约因素进行研究。结果表明,向池水中添加P明显促进了细菌的生长和对C、N素的吸收,而添加C和N对细菌数量增长和营养物质吸收的作用不明显,但添加N明显增强了细菌对有机N的矿化能力,表明原池水中C、N供应充足,而无机磷限制了细菌的生长和对营养物质的利用;捕食组的细菌生长速率最低,比对照组减少6.26%-15.4%,且增长结束后细菌数量下降较其它组显著;池塘水体的原有细菌丰度,试验培养中细菌增长数量和生长速率在温度较高的季节也较高,温度升高促进了细菌生长,减弱捕食对细菌生长的负作用。     

Archaeal community diversity in municipal waste landfill sites

Despite the pivotal role of archaea in methane production in landfills, the identity, ecology, and functional diversity of these microorganisms and their link to environmental factors remain largely unknown. We collected 11 landfill leachate samples from six geographically distinct landfills of different ages in China and analyzed the archaeal community by bar-coded 454 pyrosequencing. We retrieved 121,797 sequences from a total of 167,583 sequences (average length of 464 bp). The archaeal community was geographically structured, and nonabundant taxa primarily contributed to the observed dissimilarities. Canonical correlation analysis (CCA) suggested that the total phosphorous (TP), nitrate, and conductivity are important drivers for shaping the archaeal community. The hydrogenotrophic methanogens Methanomicrobiales and Methanobacteriales greatly dominated 9 of 11 samples, ranging from 83.7 to 99.5 %. These methanogens also dominated the remaining two samples, accounting for 70.3 and 58.8 %, respectively. Interestingly, for all of the studied Chinese landfills, 16S rRNA analysis indicated the predominance of hydrogenotrophic methanogens.     

Archaeal lipids and their biotechnological applications

The lipids of Archaea, based on glycerol isopranoid ethers, can be used taxonomically to distinguish between phenotypic subgroups of the domain to delineate them clearly from all other organisms. This review is a general survey of the structural features of archaeal lipids and how they relate to survival in the harsh environments in which the Archaea live. The molecular organization of archaeal lipids in monolayers, artificial black membranes and vesicles and the unique properties and possible biotechnological applications of liposomes of the lipids are presented. The results with these liposomes are compared with similar data obtained with synthetic compounds which mimic the structure of archaeal lipids. Studies on computer simulation are also reported.A. Gambacorta is with the istituto per la Chimica di Molecole di interesse Biologico, CNR via Toiano 6, 80072 Arco Felice, Napoli, Italy; A Gliozzi is with the Dipartimento di Fisica, Università di Genova, via Dodecanneso 33, 16146 Genova, Italy. M. De Rosa is with the Istituto di Biochimica delle Macromolecole. Seconda Università di Napoli, via Costantinopoli 16, 80132 Napoli, Italy.     

Maternal, neonatal and community factors influencing neonatal mortality in Brazil

Child mortality (the mortality of children less than five years old) declined considerably in the developing world in the 1990s, but infant mortality declined less. The reductions in neonatal mortality were not impressive and, as a consequence, there is an increasing percentage of infant deaths in the neonatal period. Any further reduction in child mortality, therefore, requires an understanding of the determinants of neonatal mortality. 209,628 birth and 2581 neonatal death records for the 1998 birth cohort from the city of S?o Paulo, Brazil, were probabilistically matched. Data were from SINASC and SIM, Information Systems on Live Births and Deaths of Brazil. Logistic regression was used to find the association between neonatal mortality and the following risk factors: birth weight, gestational age, Apgar scores at 1 and 5 minutes, delivery mode, plurality, sex, maternal education, maternal age, number of prior losses, prenatal care, race, parity and community development. Infants of older mothers were less likely to die in the neonatal period. Caesarean delivery was not found to be associated with neonatal mortality. Low birth weight, pre-term birth and low Apgar scores were associated with neonatal death. Having a mother who lives in the highest developed community decreased the odds of neonatal death, suggesting that factors not measured in this study are behind such association. This result may also indicate that other factors over and above biological and more proximate factors could affect neonatal death.     

非光合固碳微生物菌群的耐盐特性及其影响因素

从海洋中分离驯化得到的非光合固碳微生物菌群(NPMC)是无需光照和供氢的化能自养微生物,若能用于贫瘠盐碱地改良,实现其在盐碱土壤中的二次固碳,对于盐碱土壤的低碳化改良具有重要的意义.本实验初步验证了NPMC的耐盐特性,以及微量元素和磷酸盐缓冲液两单因素在次高盐条件下对NPMC固碳效率的影响.并通过响应面法研究了微量元素与盐浓度对NPMC固碳效率的交互作用.结果表明,非光合固碳微生物拥有耐受高盐浓度的特性,可耐受高达100g/L以上的总盐度,因此可用于重盐碱土壤的改良.微量元素和磷酸盐缓冲液浓度的增加,都可增强NPMC的固碳效率,微量元素的促进效应高于磷酸盐缓冲液.微量元素和盐度对NPMC固碳效率的影响存在交互作用.     

城市中的花粉致敏植物及其影响因素

大量致敏花粉飘散于空气中会引发花粉症,严重危害人体健康。由于不当的城市绿地建设使得花粉致敏植物在城市中大量聚集,加之城市热岛效应和交通污染等多方面的因素,使得城市中花粉症患者数量激增。综述了花粉致敏植物的种类、物候特征和影响因素提出了控制花粉致敏植物的建议;总结了目前花粉致敏植物研究中应进一步关注的问题,旨在为改善城市空气质量,建设合理绿化环境提供科学依据。     

长白山土壤微生物群落结构及酶活性随海拔的分布特征与影响因子

长白山是由火山喷发形成的山地生态系统,是研究生态系统重建和演替过程的天然实验室。以长白山西坡垂直带中的亚高山针叶林带、亚高山岳桦林带、高山草甸带、高山苔原带土壤为研究对象,采用磷脂脂肪酸法(PLFA)和微孔板法分别测定土壤微生物群落结构及酶活性,探讨(1)长白山西坡微生物群落结构及酶活性沿海拔的分布特征;(2)垂直带植被因子、土壤因子对微生物群落结构及酶活性的影响。结果表明:土壤有机碳、全氮、全磷含量均随海拔升高先增加再减少,有机碳和全氮最高值出现在岳桦林带;随海拔升高,土壤微生物总PLFA和各类群微生物PLFA呈现出先增加后减少的变化特征,表现为亚高山岳桦林带亚高山针叶林带高山草甸带高山苔原带;在对土壤微生物总PLFA的贡献率上,表现为细菌真菌放线菌,G~-G~+;微生物PLFA相关性方面,细菌、放线菌、G~+、G~-之间的关联性较大,真菌与这四者之间的关联性较小;土壤全氮含量与各微生物类群均表现为显著正相关,而C/N则与各微生物类群均表现为负相关,二者是调控土壤微生物沿海拔变化的主要因子;土壤水解酶βG和AP活性随海拔升高而逐渐增加,其中AP活性对高山苔原带生态系统表现出很好的响应;土壤含水量、C/N和土壤温度是调控土壤酶活性垂直变化的主要因子;高山苔原带草甸化过程对土壤含水量、全磷含量、水解酶AP活性产生重要影响,而对土壤微生物PLFA含量和其他酶活性影响不大。长白山垂直带土壤微生物群落结构和酶活性除了受到土壤环境因子和水热条件的影响,还与植被群落组成及凋落物性质具有紧密联系。     

重庆丘陵山区池塘沉积物有机碳埋藏速率及其影响因素

池塘等小型水体在全球碳循环中发挥着重要作用,是碳排放的热区,但是对池塘碳埋藏速率认识相对匮乏,限制了全面认识池塘在流域碳传输中的功能。为探究池塘沉积物有机碳埋藏速率及其影响因素,选取重庆市北碚区柳荫镇的11个池塘为研究对象,于2022年7月对池塘沉积物进行采样,分析了池塘沉积物基本理化性质,估算出池塘沉积物有机碳埋藏量和埋藏速率,并分析了池塘因素和流域因素对池塘沉积物有机碳埋藏速率的影响。结果显示：(1)沉积物总有机碳(TOC, Total Organic Carbon)含量在1.03%—3.51%之间变化,总体呈现随深度增加而逐渐降低的趋势;(2)有机碳埋藏速率均值为194.60 g m^-2 a^-1,范围区间为142.76—293.32 g m^-2 a^-1,略高于其他池塘的类似研究结果;(3)沉积物TOC含量与总氮(TN, Total Nitrogen)含量呈显著正相关(P<0.01),与流域中林地面积占比呈显著正相关(P<0.05),与旱地面积占比呈显著负相关(P<0.05),...     

杨树人工林根际古菌群落随细根生长的演变

研究细根不同生长时期根际土壤古菌群落组成结构差异,对深入了解林木细根与土壤微生物互作关系具有重要理论意义.依据细根表面颜色,采集杨树一级细根不同生长时期(白色新生根、黄色成熟根、褐色衰老根)根际土壤并提取微生物总DNA,采用特异性引物对古菌16S rDNA V4-V5区进行扩增,利用Illumina MiSeq平台进行古菌高通量测序分析.结果表明: 新生根和衰老根根际土壤古菌群落操作分类单元(OTU)丰富度相似,而成熟根根际土壤古菌群落OTU数量较少.新生根和成熟根根际土壤共同含有134个OTU;成熟根和衰老根根际土壤共同含有87个OTU,新生根和衰老根根际土壤共同拥有90个OTU.α多样性分析表明,成熟根根际土壤古菌群落Chao1指数和ACE指数显著低于新生根和衰老根根际土壤,而衰老根根际土壤古菌群落Simpson指数和Shannon指数显著低于新生根和成熟根根际土壤.PERMANOVA分析表明,新生根和衰老根根际土壤古菌群落组成有显著差异.物种注释显示,杨树根际土壤共包含12个古菌属,其中新生根5个、成熟根10个、衰老根6个.β多样性指数表明,杨树根际土壤古菌群落相似度随着细根的生长逐渐下降,不同生长阶段细根根际土壤的古菌群落结构有较大差异.其中,占绝对优势的古菌为氨氧化古菌Candidatus_Nitrososphaera,其相对丰度超过70%.且随细根生长发育,该类古菌在根际土壤中的丰度呈现上升趋势,表明其可能与细根的生长发育关系密切.