Ecological memory at millennial time-scales: the importance of data constraints,species longevity and niche features

Ecological memory describes how antecedent conditions drive the dynamics of an ecological system. Palaeoecological records are paramount to understand ecological memory at millennial time-scales, but the concept is widely neglected in the literature, and a formal approach is lacking. Here, we fill such a gap by introducing a quantitative framework for ecological memory in palaeoecology, and assessing how data constraints and taxa traits shape ecological memory patterns. We simulate the population dynamics and pollen abundance of 16 virtual taxa with different life and niche traits as a response to an environmental driver. The data is processed to mimic a realistic sediment deposition and sampled at increasing depth intervals. We quantify ecological memory with Random Forests, and assess how data properties and taxa traits shape ecological memory. We find that life-span and niche features modulate the relative importance of the antecedent values of the driver and the pollen abundance over periods of 240 yr and longer. Additionally, we find that accumulation rate and decreasing pollen-sampling resolution inflate the importance of antecedent pollen abundance. Our results suggest that: 1) ecological memory patterns are sensitive to varying accumulation rates. A better understanding on the numerical basis of this effect may enable the assimilation of ecological memory concepts and methods in palaeoecology; 2) incorporating niche theory and models is essential to better understand the nature of ecological memory patterns at millennial time-scales. 3) Long-lived generalist taxa are highly decoupled from the environmental signal. This finding has implications on how we interpret the abundance-environment relationship of real taxa with similar traits, and how we use such knowledge to forecast their distribution or reconstruct past climate.     

Pithonelloid wall-type of the Late Cretaceous calcareous dinoflagellate cyst genus Tetratropis

The late Cretaceous calcareous dinoflagellate genus Tetratropis features both a pithonelloid wall-type (evenly inclined wall-components, proven here by a polarisation optical revision) and a peridinialean paratabulation strongly suggesting a dinoflagellate origin of at least part of the Pithonelloideae. This affinity with dinoflagellates sheds more light on the palaeoecology of the Pithonelloideae (commonly termed “calcispheres”), which are characteristic of the middle to Late Cretaceous. The very short-term stratigraphic occurrence of all Tetratropis species is comparable to the distribution pattern of other calcareous dinoflagellate cyst species with a distinctive paratabulation and is thought to reflect a narrow palaeoecological niche. Tetratropis species can be interpreted either as paratabulated morphotypes of otherwise atabulate Pithonelloideae formed under exceptional palaeoenvironmental conditions or as invaders from a highly specific palaeoecological niche during short-term palaeoceanographic events probably related to the initiation of the Late Cretaceous global cooling.     

Natural and human impact in Mediterranean landscapes: An intriguing puzzle or only a question of time?

Time is a key factor to understand the effects of disturbance on natural communities or ecosystems. In Mediterranean landscapes, where nature and humans have been strongly intermingling since mid-Holocene, the relationships between plant ecology and palaeoecology and their role for the interpretation of natural and anthropogenic changes still needs to be clearly understood. Ecology and palaeoecology are both investigating such problems, but each of them cannot disentangle the specific role played by nature and by humans in shaping the present plant communities and landscapes. A new age of cooperation among researchers in ecology and palaeoecology is needed, and the integration of these closely related but separated research fields is necessary to explain the resulting dynamic puzzle. Plant ecologists should avoid the oversimplification of the actual causes as the exclusive drivers of plant communities and landscapes and force the exploitation of the available data to generate and test new hypotheses for past, present and future environmental reconstructions and management. Even when planning for the future biodiversity conservation, we need to properly use the existing information about millennia of human effects on the natural biotas, to properly set landscape management and conservation priorities.     

白垩纪中期缅甸琥珀昆虫行为生态学研究进展

缅甸琥珀生物群产自距今约98.8Ma的白垩纪中期,该生物群是世界上物种多样性很高的琥珀生物群之一,为了解白垩纪中期生物多样性和古生态提供了重要窗口。文中以近年来缅甸琥珀地层学、琥珀生物学研究为依据,总结缅甸琥珀形成环境,并对缅甸琥珀揭示的昆虫与植物的协同演化、昆虫的捕食、社会性证据、寄生、求偶和结构色等方面的研究结果进行总结,以期较全面地综述缅甸琥珀的古环境和昆虫行为生态学特征。     

Integrating models with data in ecology and palaeoecology: advances towards a model-data fusion approach

It is increasingly being recognized that global ecological research requires novel methods and strategies in which to combine process-based ecological models and data in cohesive, systematic ways. Model-data fusion (MDF) is an emerging area of research in ecology and palaeoecology. It provides a new quantitative approach that offers a high level of empirical constraint over model predictions based on observations using inverse modelling and data assimilation (DA) techniques. Increasing demands to integrate model and data methods in the past decade has led to MDF utilization in palaeoecology, ecology and earth system sciences. This paper reviews key features and principles of MDF and highlights different approaches with regards to DA. After providing a critical evaluation of the numerous benefits of MDF and its current applications in palaeoecology (i.e., palaeoclimatic reconstruction, palaeovegetation and palaeocarbon storage) and ecology (i.e. parameter and uncertainty estimation, model error identification, remote sensing and ecological forecasting), the paper discusses method limitations, current challenges and future research direction. In the ongoing data-rich era of today's world, MDF could become an important diagnostic and prognostic tool in which to improve our understanding of ecological processes while testing ecological theory and hypotheses and forecasting changes in ecosystem structure, function and services.     

Stratigraphical setting of the Silurian thelodonts from Prince of Wales Island, Northwest Territories

Additional and corrected information is given regarding the stratigraphy and palaeoecology of the thelodont-bearing sequence on Prince of Wales Island. The thelodont fauna is not older than latest Wenlockian.     

Diversity and palaeoecology of a highly diverse Late Triassic marine biota from the Cassian Formation of north Italy

A sample of marine invertebrates from the Late Triassic Cassian Formation (north Italy) yielded one of the most diverse Early Mesozoic fossil assemblages ever reported (c. 170 species). The assemblage was found in basin clays, but was transported from nearby carbonate platforms as indicated by fragmentation, microbial encrustation and the presence of coated grains and ooids. Most of the specimens are small (< 1 cm) reflecting both, small adult sizes and size sorting during transport. Rarefaction analysis suggests that diversity of surface collection and bulk sampling is the same. However, rank abundance, species richness and taxonomic composition differ strongly according to sampling method. Low‐grade lithification of the sediments is the main reason that high diversity can be recognized, because it facilitates disaggregation and finding of small molluscs. Sample standardization shows that the studied assemblage is much more diverse than known Early Triassic assemblages. However, its diversity is similar to that of Anisian assemblages. This suggests that recovery from the end‐Permian mass‐extinction was quite advanced in the Middle Triassic and alpha‐diversity remained high until the Late Triassic. According to current models, Early Triassic and Anisian faunas match the niche overlap phase of recovery during which diversity is built up by increasing alpha‐diversity, whereas beta‐diversity rises slowly. Subsequently, habitat width of species contracts because of increasing competition, making beta‐diversity the principal drive of overall diversity increase. The diversity pattern of various Late Triassic Cassian associations meets the predictions for the transition from the niche overlap to the habitat contraction phase.: Triassic, Cassian Formation, palaeoecology, diversity, mollusc dominance.     

Contributions of Quaternary palaeoecology to nature conservation

Abstract. Quaternary palaeoecology has traditionally been associated with the reconstruction of past biota and past environments over long time periods such as the Holocene period. Recent methodological developments and conceptual advances have resulted in an ‘applied palaeoecology’ that can address specific ecological and environmental questions over the last 100-200 yr, the time span of primary interest to nature conservationists. The contributions of palaeoecology to the assessment of naturalness of ecosystems, to the assessment of the fragility of ecosystems, to the assessment of the conservation status of rare species, and to the development of a factual basis for attempts at ecosystem enhancement and restoration are discussed, with reference to palaeoecological studies in Scotland, England, southwest Ireland, and Sweden. Palaeoecological results indicate that few, if any, vegetation types in western Europe are natural. Palaeoecology can provide unique insights into the fragility of ecosystems in response to human activity and other biotic factors such as grazing and to acidification. Palaeoecology can contribute basic information required for understanding the causes of recent decline of taxa such as the natterjack toad, aquatic macrophytes, and arcticalpine plants. Palaeoecology is often the only source of baseline data about past ecosystem composition and function that are essential for any realistic attempts at ecosystem restoration or enhancement.     

Organism-substrate relations: terminology for ecology and palaeoecology

Terms for indicating the relationship between organisms and their substrates are necessary for effective communication in ecology and palaeoecology. Usage of terms denoting these relationships are discussed and suggestions for more meaningful usage given. Suggested/recommended usage attempts to adhere as closely as possible to the meanings of the terms as originally proposed (e.g. symbiosis). Distinction between substrate and medium is important. Although substrate is categorized as firm and loose, detailed petrographical and/or sedimentological analyses of substrates are needed in both ecology and palaeoecology. A symmetrical classification of organism-substrate relations defining recommended terms which cover broad categories provides a terminology which hopefully is flexible and serves a useful function.     

Combining marine macroecology and palaeoecology in understanding biodiversity: microfossils as a model

There is growing interest in the integration of macroecology and palaeoecology towards a better understanding of past, present, and anticipated future biodiversity dynamics. However, the empirical basis for this integration has thus far been limited. Here we review prospects for a macroecology–palaeoecology integration in biodiversity analyses with a focus on marine microfossils [i.e. small (or small parts of) organisms with high fossilization potential, such as foraminifera, ostracodes, diatoms, radiolaria, coccolithophores, dinoflagellates, and ichthyoliths]. Marine microfossils represent a useful model system for such integrative research because of their high abundance, large spatiotemporal coverage, and good taxonomic and temporal resolution. The microfossil record allows for quantitative cross‐scale research designs, which help in answering fundamental questions about marine biodiversity, including the causes behind similarities in patterns of latitudinal and longitudinal variation across taxa, the degree of constancy of observed gradients over time, and the relative importance of hypothesized drivers that may explain past or present biodiversity patterns. The inclusion of a deep‐time perspective based on high‐resolution microfossil records may be an important step for the further maturation of macroecology. An improved integration of macroecology and palaeoecology would aid in our understanding of the balance of ecological and evolutionary mechanisms that have shaped the biosphere we inhabit today and affect how it may change in the future.     

A review of Semigenetta (Viverridae,Carnivora) from the Miocene of Eurasia based on material from the hominid locality of Hammerschmiede (Germany)

The present article offers a detailed review of the taxonomy, distribution and palaeoecology of the genus Semigenetta. The study is based on new craniodental and postcranial remains of the genus from the early late Miocene (Tortonian) locality of Hammerschmiede (Bavaria, Germany). Most of the new specimens are attributed to the medium-sized species Semigenetta sansaniensis, whereas one lower carnassial is assigned to the large-sized Semigenetta grandis, making Hammerschmiede 4 the first known locality with two species of the genus. The variability of the material of S. sansaniensis from Europe allows us to revise the taxonomic weight of some previously used characters, and to identify the smaller-sized late Miocene form Semigenetta ripolli as a junior synonym of the former. Such an evolutionary transition of S. sansaniensis towards smaller forms is explained by niche partitioning with larger carnivorans of similar ecology, such as the herein reported S. grandis. Additionally, the species Semigenetta huaiheensis is here considered as a junior synonym of Semigenetta elegans.     

Spatial niche partitioning in dinosaurs from the latest cretaceous (Maastrichtian) of North America

We examine patterns of occurrence of associated dinosaur specimens (n = 343) from the North American Upper Cretaceous Hell Creek Formation and equivalent beds, by comparing their relative abundance in sandstone and mudstone. Ceratopsians preferentially occur in mudstone, whereas hadrosaurs and the small ornithopod Thescelosaurus show a strong association with sandstone. By contrast, the giant carnivore Tyrannosaurus rex shows no preferred association with either lithology. These lithologies are used as an indicator of environment of deposition, with sandstone generally representing river environments, and finer grained sediments typically representing floodplain environments. Given these patterns of occurrence, we argue that spatial niche partitioning helped reduce competition for resources between the herbivorous dinosaurs. Within coastal lowlands ceratopsians preferred habitats farther away from rivers, whereas hadrosaurs and Thescelosaurus preferred habitats in close proximity to rivers, and T. rex, the ecosystem's sole large carnivore, inhabited both palaeoenvironments. Spatial partitioning of the environment helps explain how several species of large herbivorous dinosaurs coexisted. This study emphasizes that different lithologies can preserve dramatically dissimilar vertebrate assemblages, even when deposited in close proximity and within a narrow window of time. The lithology in which fossils are preserved should be recorded as these data can provide unique insights into the palaeoecology of the animals they preserve.     

The concepts of potential natural vegetation (PNV) and other abstractions (trying to pick up fish with wet hands)

This note follows from an earlier Commentary published in Journal of Biogeography ( Carrión & Fernández, 2009 , 36 , 2202–2203), which provided palaeoecological data, and two replies in the form of Correspondence ( Loidi et al., 2010 , 37 , 2209–2211; Farris et al., 2010 , 37 , 2211–2213). The latter papers attempt to invalidate the palaeoecological database as a source of comparison with the maps of potential vegetation. Here, some of the different interpretations of the term ‘potential natural vegetation’ (PNV), as used by the floristic phytosociological school, are discussed. It is suggested that there is a conceptual impasse that will not have a solution until a terminological consensus is reached. This terminology will open new methodological avenues that will facilitate the entry of new information derived from historical biogeography, palaeoecology, ecology, phylogeography, and niche and community modelling. One of the main sources of conflict arises from the link made between habitats and floristically‐determined associations, a confusion that has crucial repercussions in biological conservation, including in respect of the EU Habitats Directive.     

Closing the gap between plant ecology and Quaternary palaeoecology

Ecology and Quaternary palaeoecology have largely developed as parallel disciplines. Although both pursue related questions, information exchange is often hampered by particularities of the palaeoecological data and a communication gap has been perceived between the disciplines. Based on selected topics and developments mainly in Quaternary palaeoecology, we show that both disciplines have converged somewhat during recent years, while we still see untapped potential for closer interactions. Macroecology is probably the discipline that most easily combines different time scales and where co‐operations between palaeoecologists, geneticists and vegetation modellers have been inspiring. Quantitative vegetation reconstructions provide robust estimates of tree composition and land cover at different spatial scales, suitable for testing hypotheses about long‐term vegetation changes or as quantitative background data in studies on contemporary vegetation patterns. Palaeo data also hold yet unexplored potential to study the drivers of long‐term diversity, and aspects of functional diversity may facilitate comparisons between continents and over glacial–interglacial cycles.     

BILDUNG UND GEBRAUCH VON BEGRIFFEN IN DER PALÄOÖKOLOGIE

During the past 20 years, palaeoecology has established itself as a concept in palaeontology and geology. As in other interdisciplinary sciences, the interchange of methods and terminology between the branches involved has led to changes in the meaning of the terms, and changes or confusion in the corresponding scientific concepts. This calls for stricter adherence to the original definition of the terms in many cases and for their redefinition in others. Starting with a critical review of the scientific and methodological range of palaeoecology, this paper presents a reconsideration of its basic concepts, with proposals concerning the conservation or redefinition of terms and with special regard to terms coined in German literature. It is desirable that similar revisions be undertaken in other language areas in order to attain a stricter, internationalized terminology, preferably substantiated in a dictionary.     

Distributional change and conservation on the Andean flank: a palaeoecological perspective

Aim To review the insights that palaeoecology can offer on the threat posed to Andean communities by global climate change. Location The geographical focus is the eastern flank of the tropical Andes, with particular reference to Peru. Method The article presents a synthetic review of the problem. Results Species‐rich communities of the eastern Andean flank are threatened both by development and climate change. If, as predicted, the cloudbase and frost line lifts 600 m elevation this century, there will be a substantial loss of cloud forest habitat. Palaeoecology provides insights on the location and nature of past ecotones, the continuity of niche availability, and estimates for rates and modes of migration. With further warming and drying of lower montane regions, upslope migration of species will be individualistic: a new equilibrium with the altered climate is unlikely to be attained. The zone of agriculture will move upslope faster than the migrating trees and so landscape conversion will negate the ability of some species to respond to the new conditions. Conservation of the lower reaches of modern cloud forest is advocated as a means to limit this foreseeable extinction event. Main Conclusions Climate change will induce changes in plant and animal communities. Human disturbance will invade climatically marginal agricultural lands at the pace of climate change. Rapid migratory response such as that witnessed at the onset of the Holocene may not be evident as climates warm, because Holocene climatic stability has reduced outlying upslope populations that may have served as expansion nuclei. Conservation must aim to maintain plant and animal niches, rather than particular communities of species.     

Phylogeny and palaeoecology of Polyommatus blue butterflies show Beringia was a climate-regulated gateway to the New World

Transcontinental dispersals by organisms usually represent improbable events that constitute a major challenge for biogeographers. By integrating molecular phylogeny, historical biogeography and palaeoecology, we test a bold hypothesis proposed by Vladimir Nabokov regarding the origin of Neotropical Polyommatus blue butterflies, and show that Beringia has served as a biological corridor for the dispersal of these insects from Asia into the New World. We present a novel method to estimate ancestral temperature tolerances using distribution range limits of extant organisms, and find that climatic conditions in Beringia acted as a decisive filter in determining which taxa crossed into the New World during five separate invasions over the past 11 Myr. Our results reveal a marked effect of the Miocene-Pleistocene global cooling, and demonstrate that palaeoclimatic conditions left a strong signal on the ecology of present-day taxa in the New World. The phylogenetic conservatism in thermal tolerances that we have identified may permit the reconstruction of the palaeoecology of ancestral organisms, especially mobile taxa that can easily escape from hostile environments rather than adapt to them.     

Palaeoecology of cave bears as evidenced by dental wear analysis: a review of methods and recent findings

Abstract

The study of dental wear was first used years ago to infer the palaeoecology of fossil mammals and in particular their diet. Results depend predominantly on the scale of the analysis used. Analyses of dental macrowear, mesowear or microwear do not provide the same type of dietary information, be it about the seasonal, annual or lifetime diet. This contribution focuses on emblematic species, cave bears (Ursidae), in particular Ursus spelaeus spelaeus. Methods used by previous researchers to infer their dietary preferences and thus their palaeoecology are reviewed and compared. This review is complemented by an analysis of several specimens of cave bears from the Goyet cave in Belgium, using dental microwear texture analysis (DMTA), a methodology widely applied for reconstructing palaeodiets. Three main conclusions are drawn here: (1) DMTA is the method that provides the most precise palaeobiological inferences; (2) during the pre-dormancy period, cave bears show dietary flexibility; (3) dental wear alone might be not sufficient to provide a complete reconstruction of the cave bear palaeodiet.     

Tropifer laevis Gould (Coleiidae: Crustacea) and a new crustacean from the Rhaetian Bone Bed of Aust Cliff, Avon

Tropifer laevis Gould is redescribed from new material, and tentatively placed in the family Coleiidae of the decapod Crustacea. Other fragmentary crustacean remains are described and assigned to the order Isopoda. The palaeoecology of these forms is briefly considered with reference to the Rhaetian Bone Bed, from which they came.