Population genetics meets behavioral ecology

Populations are often composed of more than just randomly mating subpopulations - many organisms from social groups with distinct patterns of mating and dispersal. Such patterns have recieved much attention in behavioral ecology, yet theories of population genetics rarely take social structures into account. Consequently, population geneticists often report high levels of apparent in breeding and concomitantly low efective sizes, even for species that avoid mating between close kin. Recently, a view of gene dynamics has been introduced that takes dispersal and social structure into account. Accounting for social structure in population genetics leads to a different perspective on how genetic variation is partitoned and the rate at which genic diversity is lost in natural populations - a view that is more consistent with observed behaviors for the minimization of inbreeding.     

Population genetics of Drosophila ananassae: inversion polymorphism and body size in Indian geographical populations

Twelve Indian natural populations of Drosophila ananassae, a cosmopolitan and domestic species, were sampled and laboratory populations (mass cultures) were established from naturally impregnated females. These populations were maintained in the laboratory for some generations and were analysed chromosomally to know the frequency of different inversions. The chromosomal analysis revealed the presence of three cosmopolitan inversions. The data on the whole show that there are significant differences in the frequencies of different chromosome arrangements in these populations. Body size (wing length and thorax length) was measured in both sexes (50 females and 50 males), in all the 12 geographical populations of D. ananassae. There are statistically significant differences in wing length as well as in thorax length of both sexes among different geographical populations. Five geographical strains were crossed reciprocally and body size (wing length and thorax length) was measured in F₁ and F₂ progeny. The comparison of body size (both traits) between mid‐parent, F₁ and F₂ shows that there is an increase in body size in F₁ and F₂ progeny as compared with parents. Thus, there is no break down of heterosis in F₂, which suggests absence of coadaptation in geographical populations of D. ananassae. Scaling test statistical analysis showed additive, dominance and epistatic effects in certain crosses involving geographical strains of D. ananassae. Correlation between chromosome arrangement frequency and body size has also been tested and significant negative correlation has been found between 2L – ST chromosome arrangement and male thorax.     

Population genetics and ecology of Artemia: Insights into parthenogenetic reproduction

The relative advantages of sexual and parthenogenetic reproduction have long interested biologists and remain a central issue in ecological and evolutionary studies. Recent data on brine shrimp (Artemia) indicate that extensive ecological and genetic divergence occurs in an obligately parthenogenetic lineage. This challenges the belief that parthenogenetic lineages are evolutionary 'dead ends' and that extensive divergence is necessarily linked to recent recruitment from sexual ancestors. The molecular evidence suggests that parthenogenesis in Artemia is relatively ancient, with a single asexual lineage branching from an Old World sexual ancestor approximately five million years ago. Automictic recombination (which can occur in diploid but not polyploid parthenogenetic brine shrimp) appears to play a central role in the long-term maintenance of the parthenogenetic lineage.     

Population genetics study of the differential fertility in urban populations

In an urban population with widespread birth control practice the distribution of the number of pregnancies, births and abortions was studied in a cohort of women of completed fertility. The mean number of pregnancies per woman was 4.03 +/- 0.08 (sigma = = 2.98); the mean number of births - 1.12 +/- 0.02 (sigma = 0.77). 7.4% of women which had completed their reproductive performance had no pregnancies and 19.5% - no births. The Crow's Index of the Opportunity for Selection and its components connected with differential fertility and differential mortality were estimated. In the population under study two components of selection - selection at the prenatal stages and selection associated with infertility - are shown to be still significant. Such type of selection is exemplified by investigation of couples suffering from repeated spontaneous abortions.     

Population genetics of 30 INDELs in populations of Poland and Taiwan

The Investigator DIPplex^® kit (Qiagen) contain components for the simultaneous amplification and analysis of 30 biallelic autosomal INDELs and amelogenin. The objective of this study was to estimate the diversity of the 30 markers in Polish (N _P = 122) and Taiwanese (N _T = 126) population samples and to evaluate their usefulness in forensic genetics. All amplicon lengths were shorter than 160 base pairs. The DIPplex genotype distributions showed no significant deviation from Hardy–Weinberg rule expectations (Bonferroni corrected) except for DLH39 in the Taiwanese population. Among the Poles and the Taiwanese the mean observed heterozygosity values are 0.4385 and 0.4079, and the combined matching probability values are 7.98 × 10^?14 and 1.22 × 10^?11, respectively. The investigated marker set has been confirmed as a potential extension to standard short tandem repeat-based kits or a separate informative system for individual identification and kinship analysis. Eight INDELs have been selected as possible ancestry informative single-nucleotide polymorphisms for further analyses.     

Population genetics of marine species: the interaction of natural selection and historically differentiated populations

High gene flow, particularly as mediated by larval dispersal, has usually been viewed as sufficient to limit geographic isolation as a major source of population differentiation among marine species. Despite the general observation of relatively little geographic variation among populations of high dispersal marine species many cases of divergence have been observed and natural selection has usually been invoked to explain geographic divergence. Detailed study of several allozyme polymorphisms provided additional evidence that selection may be the predominant force that determines genetic divergence in marine systems. There is, however, growing evidence that marine species with high dispersal are more subdivided than originally thought. The use of multi-locus approaches and the application of molecular techniques have provided new insight into the nature of population divergence in marine species. I argue that (1) many species, which were formerly thought to be unstructured, are in fact subdivided into genetically discrete groups, (2) it is often the case that genetically subdivided populations have distinct evolutionary histories, (3) in many cases, natural selection is the consequence of introgression between these groups, and (4) the combination of molecular assays of both nuclear and mitochondrial DNA and allozyme loci provides the best approach to understanding the evolutionary dynamics of these interacting populations.     

The genetics and ecology of seed size variation in a biennial plant,Hydrophyllum appendiculatum (Hydrophyllaceae)

The goal of this study was to elucidate the sources of seed size variation in Hydrophyllum appendiculatum, an outcrossing, biennial plant. The genetic basis of seed size variation was examined with a diallel breeding design. The analysis did not reveal any evidence for additive genetic variance, suggesting that seed size could not evolve in response to natural selection. A series of greenhouse experiments was conducted to determine the sensitivity of seed weight to a number of ecological variables. Seed weight was affected by inbreeding depression: seeds produced by self-pollinations were significantly lighter that outcrossed seeds. Maternal plants did not differentially provision seeds that were the result of crosses between subpopulations (separated by 300 m) or between populations (separated by 1.7 km). Mean seed size was independent of the number of outcrossed pollen donors (one vs. many) that sired seeds on an inflorescence; however, the variance was greater on inflorescences pollinated by multiple donors. Direct manipulations of the abiotic environment showed that seed size was greater on plants growing under full sunlight compared to shaded plants. Seed size was unaffected by soil type, fertilizer addition, or defoliation. Finally, I determined the effect of varying pollination intensity at the level of a single inflorescence, and at the whole plant level. Seed weight was greatest on plants that had only 1 and 5 inflorescences pollinated, and least on those that had 10 and 20 pollinated. At the inflorescence level, seed weights were greatest on those where all flowers were pollinated, compared to inflorescences where only half of the flowers were pollinated. Perhaps the greatest contributor to variance in seed size in this species was the temporal decline within plants through the flowering season. These results indicate that maternal plants are not capable of producing uniform seed crops. Rather, the final distribution of seed size produced by plants within a population will necessarily vary and be the result of pollination effects, heterogeneity in the abiotic environment, and developmental constraints.     

Population genetics of introduced and native populations of the green mussel, Perna viridis: determining patterns of introduction

Genetic variation can be used to determine routes of introduction of non-native species and whether introduced populations lost variation during establishment. The present study sought to determine whether multiple, geographically isolated non-native populations of the green mussel, Perna viridis, were the product of a stepping stone expansion of a single introduction or from multiple independent introductions from the native range. Measurements of genetic variation were compared among five introduced populations and three populations from within the native range. We sequenced 650 bp of the mitochondrial gene cytochrome oxidase I from 280 samples from five introduced populations and another 190 samples from three native populations. Haplotype frequencies of all introduced populations were not significantly different from each other, but virtually all populations differed from samples taken from the native range. Measurements of genetic variation tended to suggest that introduced populations had less variation than most native populations and there was no evidence for admixture in any of the introduced populations. The genetic data and Monte Carlo simulations both provide compelling evidence of a stepping-stone pattern of introduction of P. viridis from the native range to Trinidad, and from Trinidad to other locations in the Caribbean and United States. The lack of genetic variation in introduced populations suggests that the initial introduction was relatively small and the lack of admixture suggests a single original source population.     

The influence of ecology and genetics on behavioral variation in salamander populations across the Eastern Continental Divide

Understanding the unique contributions of ecology and history to the distribution of species within communities requires an integrative approach. The Eastern Continental Divide in southwestern Virginia separates river drainages that differ in species composition: the more aquatic, predatory Desmognathus quadramaculatus is present only in the New River drainage (which drains to the Gulf of Mexico), while Desmognathus monticola is present in both the New River drainage and the James River drainage (which drains to the Atlantic Ocean). We investigated natural distributions, behavioral variation in experimental mesocosms, population genetic, and phylogenetic implications of community structure. The presence of D. quadramaculatus increased the terrestriality of D. monticola in natural and experimental situations but to different degrees in allopatric and sympatric populations. Our ecological data suggest that the degree of terrestriality in D. monticola is a result of a balance between the optimal aquatic habitat and risks of predation. Our genetic analyses suggest that D. monticola has experienced a recent range expansion and has only a recent history of association with D. quadramaculatus in Virginia. This is surprising given the strong behavioral variation that exists in populations experiencing unique community compositions over a scale of meters. This study demonstrates the need to combine both ecology and genetics toward an understanding of the factors affecting species distributions, behavioral variation between populations, and patterns of genetic variation across a landscape.     

Integrating floral scent, pollination ecology and population genetics

1 . Floral scent is a key factor in the attraction of pollinators. Despite this, the role of floral scent in angiosperm speciation and evolution remains poorly understood. Modern population genetic approaches when combined with pollination ecology can open new opportunities for studying the evolutionary role of floral scent.
2 . A framework of six hypotheses for the application of population genetic tools to questions about the evolutionary role of floral scent is presented. When floral volatile chemistry is linked to pollinator attraction we can analyse questions such as: Does floral volatile composition reflect plant species boundaries? Can floral scent facilitate or suppress hybridization between taxa? Can the attraction of different pollinators influence plant mating systems and pollen-mediated gene flow? How is population genetic structure indirectly influenced by floral scent variation?
3 . The application of molecular tools in sexually deceptive orchids has confirmed that volatile composition reflects species boundaries, revealed the role of shared floral odour in enabling hybridization, confirmed that the sexual attraction mediated by floral odour has implications for pollen flow and population genetic structure and provided examples of pollinator-mediated selection on floral scent variation. Interdisciplinary studies to explore links between floral volatile variation, ecology and population genetics are rare in other plant groups.
4 . Ideal study systems for future floral scent research that incorporate population genetics will include closely related taxa that are morphologically similar, sympatric and co-flowering as well as groups that display wide variation in pollination mechanisms and floral volatiles.     

Population genetics of Japanese monkeys: III. Ancestry and differentiation of local populations

Genetic variability in local populations of the Japanese macaque (Macaca fuscata) was quantified by the proportion of polymorphic loci (P_poly) and the average heterozygosity per individual ( ) from the starch- and polyacrylamide-gel electrophoreses of blood proteins controlled by 32 independent genetic loci. P_poly averaged 13.6% and 2.1%, the values being at lower level compared with other mammalian species. Geographical distribution of the genetic variations was not uniform in the whole species but its local differentiation was remarkable. Genetic variability tended to be lower in the southern localities, especially in the southernmost island of Yaku, than in the central and northern localities. The genetic distance and the principal component analyses showed that the most divergent local populations were the population in the Shimokita peninsula at the northernmost distribution area of the species and the populations on the Yaku island at the southernmost. The most contributory loci to the genetic divergence were the PGM-II, Gc, and Hb-β, the variant allele at the first locus being concentrated in the Yaku island, in the Shimokita peninsula, and in the easternmost Boso peninsula, and the variant allele at the latter two loci having high frequencies in the Shimokita and the Izu peninsulas. The Hennigian cladistic analysis, for which the Chinese rhesus macaque (M. mulatta) was used as the outgroup, revealed that the number of presence of derived (apomorphic) alleles was conspicuously smaller in southern islet populations than in central and northern populations, whereas any areal tendency was not recognized in the number of loss of ancestral (plesiomorphic) alleles. The observed distribution pattern that the plesiomorphic variant allele at the PGM-II locus concentrated only in the peripheral (southernmost, northernmost, and easternmost) ranges of the species, would indicate, as a possibility, the occurrence of two or more waves of immigration of ancestors of the present-day Japanese macaque from the Asian continent.     

Population genetics of Japanese monkeys: I. Estimation of the effective troop size

In order to estimate the genetically effective troop size of Japanese monkeys, we have to know the pattern of distribution of the numbers of gametes contributed by the individual members of the parental population to the next generation. The author inspected the observation records of macaque troops made by a number of socio-ecologists and found that the relationship between sexual rank and sexual activity of adult males could be approximately expressed by the law of geometrical series. Assuming that the genetic contribution of male parents to the next generation was proportional to their sexual activity and that the numbers of gametes contributed by the female parents formed thePoisson distribution, the author derived a formula for estimating effective troop size (N), namely, whereN _c was the census number andN _m andN _f the numbers of male and female parents, respectively, of the troop. Moreover, assumingN _m =0.2N _c andN _f =0.3N _c as an average, the effective size could be estimated as 36% or less of the census number.