Modeling and Analysis of the Effect of Training on \dot{V}O_{2} Kinetics and Anaerobic Capacity

In this paper, we present an application of a number of tools and concepts for modeling and analyzing raw, unaveraged, and unedited breath-by-breath oxygen uptake data. A method for calculating anaerobic capacity is used together with a model, in the form of a set of coupled nonlinear ordinary differential equations to make predictions of the kinetics, the time to achieve a percentage of a certain constant oxygen demand, and the time limit to exhaustion at intensities other than those in which we have data. Speeded oxygen kinetics and increased time limit to exhaustion are also investigated using the eigenvalues of the fixed points of our model. We also use a way of analyzing the oxygen uptake kinetics using a plot of vs which allows one to observe both the fixed point solutions and also the presence of speeded oxygen kinetics following training. A method of plotting the eigenvalue versus oxygen demand is also used which allows one to observe where the maximum amplitude of the so-called slow component will be and also how training has changed the oxygen uptake kinetics by changing the strength of the attracting fixed point for a particular demand.     

Structures and aromaticity of Cationic closo-$$ B_{n} H_{{n - 3}} {\left( {CO} \right)}^{ + }_{3} $$ (n = 5−12)

Structures and stabilities of tricarbonyl closo-boranes cation, BnHn-3(CO)3+ (n = 5-12), isolobal with cationic closo-carboranes C3Bn-3Hn+, have been investigated at the B3LYP/6-311+G** level of theory. The most stable positional isomers of individual cluster are in agreement with those of closo-C3Bn-3Hn+ clusters except for n = 8 and 10. Energetic analysis identifies closo-B6H3(CO)3+, closo-B10H7(CO)3+ and closo-B12H9(CO)3+ as the most stable cages. It is also found that closo-BnHn-3(CO)3+ is much less strained than closo-C3Bn-3Hn+. The negative nucleus independent chemical shifts (NICS) at the cage center reveal three-dimensional aromaticity of the closo-BnHn-3(CO)3+ cages. The CO stretching frequencies have been computed in advance to aid experimental study.     

Estradiol -17-β enhances the formation of {3H}-PGF2α from {3H}-PGE2 in the uterus isolated from ovariectomized rats

Formation of {³H}-PGF_2α and {³H}-13,14,dihydro-15-keto-PGF_2α from {³H}-PGE₂ by the supernatant of uterine homogenates from estrous and ovariectomized rats, was studied, using the reaction system PGE₂ + NADPH + {³H}-PGE₂ + supernatant. Enzymatic conversion was lower in uterine supernatants from spayed rats than in uterine homogenates of rats at natural estrus.Spayed animals were injected with progesterone (P) or with estradiol-17-β (E₀) at a dose of 1.0 or 50.0 ug. Conversion of {³H}-PGF_2α to {³H}-PGE₂ or to {³H}-13,14,dihydro-15-keto-PGF_2α did not differ in control ovariectomized or ovariectomized rats receiving P or 1.0 ug E₀. However, 50.0 ug E₀ induced a significant oversion after 30 (P < 0.01) and 60 (P < 0.001) min of incubation.It is concluded that E₀, at the 50.0 ug dose, but not the 1.0 ug dose of E₀, nor progesterone, stimulated conversion of {³H}-PGE₂ into {³H}-PGF_2α or {³H}-13, 14,dihydro-15-keto-PGF_2α, presumably through the activity of the enzyme PGE₂-9-keto-reductase.     

Octanuclear {Co6W2} aggregate versus mixed valence {Co}3 cluster in the assembling of Co(phen)2Cl2 (phen = 1,10-phenanthroline) with octacyano metallates: A case of non-isostructurality between {W(CN)8}4− and {Nb(CN)8}4−

An unprecedented octanuclear aggregate, [{Co(phen)₂}₆{W(CN)₈}₂Cl₂] · 2Cl, 2, resulted from the assembling of {Co(phen)₂Cl₂}, 1, and {W(CN)₈}^4?. Surprisingly, the reaction with the paramagnetic {Nb(CN)₈}^4? unit did not afford the homologous {Co–Nb} cluster. Instead the latter building unit undergoes dissociation which led to the formation of a mixed-valence [{Co^II(phen)₂}{Co^III(phen)(CN)₄}₂], 3. This observation is in contrast to the usual trend that {Nb^IV(CN)₈}^4? forms compounds isostructural to that observed for {Mo^IV(CN)₈}^4? and {W^IV(CN)₈}^4?. The structures of the compounds 2 and 3 have been established by single crystal X-ray diffraction. Magnetic behaviors for compounds 1–3 are reported.     

Mammalian {alpha}-mannosidases--multiple forms but a common purpose?

Previously,     

Fully relativistic rovibrational energies and spectroscopic constants of the lowest {\text{X}}:(1)0_g^{ + } , A′:(1)2 u , A:(1)1 u , {\text{B}}\prime :(1)0_u^{ - } and {\text{B}}:(1)0_u^{ + } states of molecular chlorine

The main goal of this paper is to present the rovibrational energies and spectroscopic constants of the Cl(2) molecular system in the relativistic states [Formula: see text], A':(1)2( u ), A:(1)1( u ), [Formula: see text] and [Formula: see text]. More precisely, we have evaluated the Cl(2) ω ( e ), ω ( e ) x ( e ), ω ( e ) y ( e ), α ( e ), γ ( e ) and B ( e ) rovibrational spectroscopic constants using two different procedures. The first was obtained by combining the rovibrational energies, calculated through solving Schr?dinger's nuclear equation and the diatomic rovibrational energy equation. The second was obtained by using the Dunham method. The calculated properties are in good agreement with available experimental data.     

Dynamic aggregation of the mid-sized gadolinium complex {Ph4[Gd(DTTA)(H2O)2]− 3}

A compound binding three Gd³⁺ ions, {Ph₄[Gd(DTTA)(H₂O)₂]^? ₃} (where H₅DTTA is diethylenetriaminetetraacetic acid), has been synthesized around a hydrophobic center made up of four phenyl rings. In aqueous solution the molecules start to self-aggregate at concentrations well below 1 mM as shown by the increase of rotational correlation times and by the decrease of the translational self-diffusion constant. NMR spectra recorded in aqueous solution of the diamagnetic analogue {Ph₄[Y(DTTA)(H₂O)₂]^? ₃} show that the aggregation is dynamic and due to intermolecular π-stacking interactions between the hydrophobic aromatic centers. From estimations of effective radii, it can be concluded that the aggregates are composed of two to three monomers. The paramagnetic {Ph₄[Gd(DTTA)(H₂O)₂]^? ₃} exhibits concentration-dependent ¹H NMR relaxivities with high values of approximately 50 mM^?1 s^?1 (30 MHz, 25 °C) at gadolinium concentrations above 20 mM. A combined analysis of ¹H NMR dispersion profiles measured at different concentrations of the compound and ¹⁷O NMR data measured at various temperatures was performed using different theoretical approaches. The fitted parameters showed that the increase in relaxivity with increasing concentration of the compound is due to slower global rotational motion and an increase of the Lipari–Szabo order parameter S ².     

An extended combinatorial 15N, 13Cα, and $$ ^{13} {\text{C}}^{\prime } $$ labeling approach to protein backbone resonance assignment

Solution NMR studies of α-helical membrane proteins are often complicated by severe spectral crowding. In addition, hydrophobic environments like detergent micelles, isotropic bicelles or nanodiscs lead to considerably reduced molecular tumbling rates which translates into line-broadening and low sensitivity. Both difficulties can be addressed by selective isotope labeling methods. In this publication, we propose a combinatorial protocol that utilizes four different classes of labeled amino acids, in which the three backbone heteronuclei (amide nitrogen, α-carbon and carbonyl carbon) are enriched in ¹⁵N or ¹³C isotopes individually as well as simultaneously. This results in eight different combinations of dipeptides giving rise to cross peaks in ¹H–¹⁵N correlated spectra. Their differentiation is achieved by recording a series of HN-detected 2D triple-resonance spectra. The utility of this new scheme is demonstrated with a homodimeric 142-residue membrane protein in DHPC micelles. Restricting the number of selectively labeled samples to three allowed the identification of the amino-acid type for 77 % and provided sequential information for 47 % of its residues. This enabled us to complete the backbone resonance assignment of the uniformly labeled protein merely with the help of a 3D HNCA spectrum, which can be collected with reasonable sensitivity even for relatively large, non-deuterated proteins.     

Acetato complexes of molybdenum(V): A novel tetranuclear core based on the metal–metal bonded {Mo2O4}2+ units

A series of acetato complexes of molybdenum(V), based on the singly metal–metal bonded {Mo₂O₄}²⁺ structural fragment, has been prepared. A dinuclear (PyH)₃[Mo₂O₄Cl₄(OOCCH₃)] · CH₃CN (1) (PyH⁺ = pyridinium cation, C₅H₅NH⁺) was obtained upon the reaction of (PyH)₅[MoOCl₄(H₂O)]₃Cl₂ with the equimolar solution of pyridine and acetic acid in acetonitrile at ambient conditions. The acetato ligand in 1 is coordinated to a pair of molybdenum atoms in a syn–syn bidentate bridging manner. (PyH)_n[MoOBr₄]_n afforded in an analogous synthetic procedure a tetranuclear cluster, [Mo₄O₈(OOCCH₃)₃(OH)Py₄] · 1/2CH ₃CN · 1/2H₂O (3), with a novel core which may be envisioned as the acetate- and hydroxide-assisted assembly of {Mo₂O₄}²⁺ building blocks. Its structure is presented in terms of known tetranuclear clusters which are also composed of two {Mo₂O₄}²⁺ units. The acetato ligands in 3 adopted apart from bidentate bridging binding modes also a monodentate one. Partial substitution of chlorido ligands in (PyH)₃[Mo₂O₄Cl₄(OOCCH₃)] · CH₃CN (1) with pyridine resulted in a neutral [Mo₂O₄Cl(OOCCH₃)Py₃] · PrⁱOH · Py (2) which retained the original acetate coordination. The title compounds were fully characterized by X-ray diffraction studies and infrared vibrational spectroscopy.     

The Effect of Transposon P{GUS · p53.259H} on the Frequency of Tumor Clones in Drosophila melanogaster wtsP2/+ Heterozygotes

We showed that transposon P{GUS · p53.259H}, mapped to chromosome 3 and carrying a dominant mutation p53 ^259H.GUS, has a positive effect on the frequency of spontaneous and carcinogen-induced tumor mosaic clones warts ^– in Drosopila melanogaster heterozygotes for the tumor suppressor gene warts located in the same chromosome. The transposon effect could be explained either by the arrest of apoptosis in the cells expressing mutant p53 ^259H.GUS gene and containing carcinogen-induced pre-mutations, and/or by genetic instability introduced into chromosome 3 by the P{GUS · p53.259H} transposon itself. The effect of the P{GUS · p53.259H} appeared to be carcinogen-specific. It substantially increased the frequency of tumors induced by supermutagenic platinum complex, oxoplatin, and did not increase the frequencies of tumors induced by polycyclic aromatic hydrocarbons, benzo()pyrene and pyrene. In the spectrum of mutations induced by all carcinogens tested, somatic recombination events prevailed over somatic mutations. Hence, carcinogen-specificity of the P{GUS · p53.259H} effect cannot be explained by preferential induction of somatic mutations or somatic recombination by one of the carcinogens. Organ-specificity of the increased frequency of mosaic warts ^– clones induced by P{GUS · p53.259H} was established.     

Does the {Delta}F508-CFTR mutation induce a proinflammatory response in human airway epithelial cells?

In the clinical setting, mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene enhance the inflammatory response in the lung to Pseudomonas aeruginosa (P. aeruginosa) infection. However, studies on human airway epithelial cells in vitro have produced conflicting results regarding the effect of mutations in CFTR on the inflammatory response to P. aeruginosa, and there are no comprehensive studies evaluating the effect of P. aeruginosa on the inflammatory response in airway epithelial cells with the ΔF508/ΔF508 genotype and their matched CF cell line rescued with wild-type (wt)-CFTR. CFBE41o- cells (ΔF508/ΔF508) and CFBE41o- cells complemented with wt-CFTR (CFBE-wt-CFTR) have been used extensively as an experimental model to study CF. Thus the goal of this study was to examine the effect of P. aeruginosa on gene expression and cytokine/chemokine production in this pair of cells. P. aeruginosa elicited a more robust increase in cytokine and chemokine expression (e.g., IL-8, CXCL1, CXCL2 and TNF-α) in CFBE-wt-CFTR cells compared with CFBE-ΔF508-CFTR cells. These results demonstrate that CFBE41o- cells complemented with wt-CFTR mount a more robust inflammatory response to P. aeruginosa than CFBE41o-ΔF508/ΔF508-CFTR cells. Taken together with other published studies, our data demonstrate that there is no compelling evidence to support the view that mutations in CFTR induce a hyperinflammatory response in human airway epithelial cells in vivo. Although the lungs of patients with CF have abundant levels of proinflammatory cytokines and chemokines, because the lung is populated by immune cells and epithelial cells there is no way to know, a priori, whether airway epithelial cells in the CF lung in vivo are hyperinflammatory in response to P. aeruginosa compared with non-CF lung epithelial cells. Thus studies on human airway epithelial cell lines and primary cells in vitro that propose to examine the effect of mutations in CFTR on the inflammatory response to P. aeruginosa have uncertain clinical significance with regard to CF.     

Exploring the Role of a Conserved Class A Residue in the {Omega}-Loop of KPC-2 β-Lactamase: A MECHANISM FOR CEFTAZIDIME HYDROLYSIS

Gram-negative bacteria harboring KPC-2, a class A β-lactamase, are resistant to all β-lactam antibiotics and pose a major public health threat. Arg-164 is a conserved residue in all class A β-lactamases and is located in the solvent-exposed Ω-loop of KPC-2. To probe the role of this amino acid in KPC-2, we performed site-saturation mutagenesis. When compared with wild type, 11 of 19 variants at position Arg-164 in KPC-2 conferred increased resistance to the oxyimino-cephalosporin, ceftazidime (minimum inhibitory concentration; 32→128 mg/liter) when expressed in Escherichia coli. Using the R164S variant of KPC-2 as a representative β-lactamase for more detailed analysis, we observed only a modest 25% increase in k(cat)/K(m) for ceftazidime (0.015→0.019 μm(-1) s(-1)). Employing pre-steady-state kinetics and mass spectrometry, we determined that acylation is rate-limiting for ceftazidime hydrolysis by KPC-2, whereas deacylation is rate-limiting in the R164S variant, leading to accumulation of acyl-enzyme at steady-state. CD spectroscopy revealed that a conformational change occurred in the turnover of ceftazidime by KPC-2, but not the R164S variant, providing evidence for a different form of the enzyme at steady state. Molecular models constructed to explain these findings suggest that ceftazidime adopts a unique conformation, despite preservation of Ω-loop structure. We propose that the R164S substitution in KPC-2 enhances ceftazidime resistance by proceeding through "covalent trapping" of the substrate by a deacylation impaired enzyme with a lower K(m). Future antibiotic design must consider the distinctive behavior of the Ω-loop of KPC-2.     

Computational modeling of factors that modulate the unique FeNO bonding in {FeNO}6 heme–thiolate model complexes

A density functional theory account of the changes in FeNO bonding that occur in response to both bonded and nonbonded structural perturbations is reported for a series of {FeNO}(6) heme-thiolate model complexes. Using [Fe(porphine)(SCH(3))NO] as the reference complex, we constructed models to mimic equatorial (cis), distal, and proximal influences of protein environments. Overall, the results from these calculations reveal that the Fe-NO and N-O bond strengths change in the same direction upon variations in structure and environment. These bonding changes are manifested in unique direct correlations between the Fe-NO and N-O vibrational frequencies and bond lengths, as evidenced by their positive slopes (slopes of the familiar inverse or backbonding correlations are negative). The electronic origin of the direct correlations appears to derive from the electron density distribution in high-energy molecular orbitals. This variability modulates the FeNO antibonding character throughout the triatomic FeNO moiety. The results of this study suggest that the stabilities and reactivities of {FeNO}(6) centers in heme-thiolate enzymes can be modulated over a significant range through a variety of bonded and nonbonded means.     

Measurement of inter-glycosidic 13C-1H coupling constants in a cyclic β(1→2)-glucan by 13C-filtered 2D {1H,1H}ROESY

Summary A method for measuring three-bond ¹³C-¹H scalar coupling constants across glycosidic bonds in a cyclic (12)-glucan icosamer is presented. This oligosaccharide molecule, with its high degree of symmetry, represents a particular challenge for NMR spectroscopy to distinguish inter-residue from intra-residue heteronuclear coupling effects. Chemically equivalent H2 protons in adjacent glucosyl residues are distinguished on the basis of their different through-space, dipolar interactions with the anomeric protons (H1). The strong NOE contact between anomeric (H1) and aglyconic (H2) protons permits the selective observation of the inter-residue heteronuclear couplings ³J_C1H2 and ³J_C2H1 in a natural-abundance ¹³C-₁-half-filtered {¹H,¹H} ROESY experiment.Abbreviations COSY scalar correlated spectroscopy - NOE nuclear Overhauser effect - NOESY NOE spectroscopy - ROESY rotating-frame NOE spectroscopy     

Synthesis, spectroscopy, tandem mass spectrometry, and electrochemistry of the linearly bridged μ-{trans-1,4-bis[2-(4-pyridyl)ethenyl]-benzene}-{Ru3O(CH3COO)6(py)2}2 cluster

The novel polynuclear [{Ru₃O(CH₃COO)₆(py)₂}₂(BPEB)](PF₆)₂ species containing the linear bridging trans-1,4-bis[2-(4-pyridyl)ethenyl]-benzene ligand (BPEB) was synthesized and its structural characterization carried out by means of positive ion electrospray (ESI-MS) and tandem mass (ESI-MS/MS) spectrometry, as well as by ¹H NMR spectroscopy. The doubly charged cation [{Ru₃O(CH₃COO)₆(py)₂}₂(BPEB)]²⁺ was detected in the ESI-MS mass spectrum as a multiple-component isotopomeric ionic cluster centered at m/z 974, which ion abundance and m/z distribution matched perfectly the isotopic pattern calculated for this multiple isotope Ru₃-containing ion. The tandem mass spectrum of [{Ru₃O(CH₃COO)₆(py)₂}₂(BPEB)]²⁺ provided a structural diagnostic dissociation behavior, on the basis of the characteristic charge splitting and sequential ligand loss steps. The cyclic voltammograms of the complex exhibited a quasi-reversible multistep redox behavior, displaying three waves at 1.14, 0.08, and −1.21 V ascribed to the [Ru₃O]^2+/1+/0/1− processes and two waves at −1.56 and −1.78 V ascribed to the BPEB^0/1−/2− redox processes which are also observed in the free ligand, at −1.48 and 1.61 V, respectively. In spite of the conducting nature of the bridging ligand, the electrochemical and spectroelectrochemical results indicated a weak electronic coupling between the triangular cluster centers.     

Reactions of the cationic monobut-2-yne complex [WI(CO)(NCMe)(dppm)(η2-MeC2Me)][BF4] {dppm = Ph2P(CH2)PPh2} with carbon monoxide and tButylisonitrile

The compound [WI(CO)(NCMe)(dppm)(η²-MeC₂Me)][BF₄] reacts with carbon monoxide and ^tbutylisonitrile in CH₂Cl₂ at room temperature to give the substituted products [WI(CO)₂(dppm)(η²-MeC₂Me)][BF₄] (1) and [WI(CO)(CN^tBu)(dppm)(η²-MeC₂Me)][BF₄] (2) in good yield. The new complexes were fully characterised by elemental analysis, infrared, ¹H and ¹³C NMR spectroscopy. ¹³C NMR spectroscopy suggests that the but-2-yne ligand is donating four electrons to the tungsten in these complexes.     

Synthesis of N-{2-O-2-Acetamido-1-O-acyl (or 1,6-di-O-acyl)-2,3-dideoxy-α-d-glucopyranose-3-yl]-d-lactoyl}-l-alanyl-d-isoglutamine Methyl Esters,and Their Immunoadjuvant Activities

A variety of 1-O-acyl and 1,6-di-O-acyl derivatives of N-acetylmuramoyl-l-alanyl-G-isoglutamine methyl esters were synthesized from N-[2-O-(2-acetamido-2,3-dideoxy-4,6-O-iso- propylidene-d-glucopyranose-3-yl)-d-lactoyl]-l-alanyl-d-isoglutamine methyl ester, and their biological activities were examined in guinea-pigs and mice.     

Anti-Auxin Activity of Xyloglucan Oligosaccharides: the R?le of Groups other than the Terminal {alpha}-L-Fucose Residue

The quantitatively major nonasaccharide (XG9) derived from xyloglucanby digestion with cellulase exhibits anti-auxin activity inthe pea stem segment straight-growth bioassay; the most effectiveconcentration of XG9 is c. 10^–9 M. Previous work had shownthat XG9 owes its biological activity to the presence of a terminal-L-fucopyranose residue. In order to investigate to what extentthe remainder of the XG9 molecule is essential for activity,several fucose-containing compounds were tested for their abilityto mimic the anti-auxin effect of XG9. A fucose-containing pentasaccharideof xyloglucan (XG5; probable structure FucGalXylGlcGlc) was,at 10^–8 M, about as effective an anti-auxin as 10^–9M XG9; unlike XG9, XG5 did not diminish in effectiveness at10^–7 M. The human milk trisaccharide, 2'-fucosyl-lactose[L-fucopyranosyl--(12)-D-galactopyranosyl-ß-(14)-D-glucose],whose FucGal unit is identical with that of XG9, inhibited auxin-inducedelongation over a wide range of concentrations centred on about10^–8 M. 2'-Fucosyl-lactose at 10^–8 M was about aseffective an anti-auxin as 10^–9 M XG9. Free L-fucose andmethyl--L-fucopyranoside were unable to inhibit auxin-inducedgrowth at any concentration tested (10^–10 M to 10^–6M) and neither compound interfered with the inhibition causedby 10^–9 M XG9 when co-incubated at concentrations up to10^–4 M. The results confirm the essential r?le of an -linkedterminal fucose residue in the anti-auxin activity of XG9 andshow that the sub-terminal galactose residue may also be required.Possible reasons why high concentrations of XG9 fail to antagonizeauxin-induced growth while high concentrations of XG5 and 2'-fucosyl-lactosecontinue to do so are discussed. Key words: Anti-auxin, oligosaccharin, fucose