Effects of chromosome reconstruction on deletion clustering in Hordeum vulgare

Summary The barley standard karyotype, two reconstructed karyotypes with all chromosomes interdistinguishable, and four translocation lines were treated with maleic hydrazide. A specific chromosomal site in satellite chromosome 7 (segment 44 adjacent to the nucleolus organizer region) of the standard karyotype was found to represent a deletion hot spot. A sample of specifically reconstructed karyotypes were used to check whether or not transposition of the hot spot region, or changes of its neighborhood, would affect its involvement in deletions. One of the seven karyotypes (translocation line T 505 with a pair of chromosomes having both nucleolus organizer regions and satellites in opposite arms) was without deletion clustering in segment 44. At the same time, a prominent Giemsa band close to the secondary constriction was absent from segment 44. These data show that the involvement in deletions of a certain chromosome segment is modifiable in certain cases by chromosome reconstruction. Similar observations have been made in Vicia faba.     

The B chromosomes of the grasshopper Eyprepocnemis plorans and the intragenomic conflict

The grasshopper Eyprepocnemis plorans harbours an extremely widespread polymorphism for supernumerary (B) chromosomes, which is found in almost all circum-Mediterranean and Caucasian populations hitherto analysed. B chromosomes in this species have been shown to evolve through several stages of parasitic and near-neutral nature, presumably because of an arms race between the standard (A) and B chromosomes. This intragenomic conflict can either be solved with the extinction of the neutralised B chromosome or, more interestingly, with the replacement of the neutralised B by a mutant version being parasitic again and thus prolonging B chromosome life. This species thus provides a complete view of the long-term life-cycle of parasitic B chromosomes.     

Chromosome organization revealed upon the decondensation of telophase chromosomes inAllium

Chromosomes of root tip cells ofAllium cepa andAllium sativum were studied in early, middle and late telophase to examine the organization of mitotic chromosomes, taking advantage of the naturally occurring chromosome dispersion during the process of decondensation in telophase. Longitudinal and transverse sections of telophase chromosomes viewed under the transmission electron microscope showed that mitotic chromosomes inAllium were composed of helically coiled 400–550 nm chromatin fibres. In some regions of the longitudinal sections, these chromatin fibres were seen to be orientated parallel to one another but formed roughly a right angle to the long axis of the chromosome. In transverse sections, the telophase chromosome appeared to have a hollow centre encircled by the 400–550 nm chromatin fibre which in turn was a hollow tube structure formed by the coiling of a thinner fibre of 170–200 nm. In addition, cross views of chromatin fibres of 170–200 nm and 50–70 nm were also identified in telophase chromosome preparations. These two organizational levels of chromatin fibres also showed a hollow centre. The process of decondensation of telophase chromosomes is described, and some morphological characteristics associated with the activities of chromosome decondensation are analysed. Based on the observations made onAllium chromosomes in this study, various models of chromosome organization are discussed.     

CHROMOSOMES AND SYSTEMATICS OF ASPLENIUM SECT. HYMENASPLENIUM (ASPLENIACEAE)

Gametic and somatic chromosome numbers of eight Asian species belonging to Asplenium sect. Hymenasplenium were determined. Seven species were observed to have chromosome numbers based on x = 39, and one on x = 38. These chromosome numbers are exceptional in Asplenium which is well known to have chromosomes of n = 36 or multiples thereof. Decisions on the taxonomic status of the species of section Hymenasplenium were facilitated by cytological observations. Systematic recognition of this section is also supported by the peculiarity in the chromosome numbers, and evidence for the addition to the section of several other species is presented.     

Destruction of specific heterochromatic chromosomes during spermatogenesis in the Comstockiella chromosome system (Coccoidea: Homoptera)

In male coccids with the Comstockiella chromosome system, the set of chromosomes of paternal orgin becomes heterochromatic (H) during early cleavage. Just prior to prophase I of spermatogenesis, some of the H chromosomes are destroyed; the rest are eliminated following meiosis. In this report a Comstockiella sequence is described from Dactylopius opuntiae (2n=10) in which one chromosome pair is about three times longer than the others. During prophase I the number of small H chromosomes present varied from cyst to cyst, but the long H chromosome was present in every cyst. These observations provide the best evidence to date that in the Comstockiella system a particular chromosome may always escape destruction. An analysis of Kitchin's (1975) data about the frequency of prophase I cysts with 1–4 H chromosomes in three species of Parlatoria with 2n = 8 suggested that in these species chromosomes of similar size may have very different probabilities of being destroyed. Evidence that in other species with the Comstockiella system a particular H chromosome is always retained is reviewed, and the possibility that in Ancepaspis tridentata the variation in the length of the H chromosome retained is due to the partial destruction of the longest chromosome is discussed.     

Allelic complementation between mutants in the fertility factyors of the Y chromosome in Drosophila melanogaster

Summary Complementation maps of the seven male fertility factors in the Y chromosome of D. melanogaster have been constructed and are linearly consistent in all cases. These observations are further evidence that genetic loci in heterochromatic chromosomes share many characteristics with loci in euchromatic regions of chromosomes. These functional maps are consistent with the hypothesis that the genetic material of the male fertility factors in the Y chromosome is made up of single-copy sequences which become amplified in the primary spermatocyte.     

Origin of human chromosome 2 revisited

Similarities in chromosome banding patterns and hornologies in DNA sequence between chromosomes of the great apes and humans have suggested that human chromosome 2 originated through the fusion of two ancestral ape chromosomes. A lot of work has been directed at understanding the nature and mechanism of this fusion. The recent availability of the human chrornosome-2-specific alpha satellite DNA probe D2Z and the human chromosome-2p-specific subtelomeric DNA probe D2S445 prompted us to attempt cross-hybridization with chromosomes of the chimpanzee (Pan troglodytes), gorilla (Gorilla gorilla) and orangutan (Pongo pygmaeus) to search for equivalent locations in the great apes and to comment on the origin of human chromosome 2. The probes gave different results. No hybridization to the chromosome-2-specific alpha satellite DNA probe was observed on the presumed homologous great ape chromosomes using both high-stringency and low-stringency post-hybridization washes, whereas the subtelomeric-DNA probe specific for chromosome 2p hybridized to telomeric sites of the short arm of chromosome 12 of all three great apes. These observations suggest an evolutionary difference in the number of alpha satellite DNA repeat units in the equivalent ape chromosomes presumably involved in the chromosome fusion. Nevertheless, complete conservation of DNA sequence of the subtelomeric repeat sequence D2S445 in the ape chromosomes is demonstrated.     

The classification of the chromosomes of rye (Secale cereale L.): A translocation tester set

The difficulties encountered in classifying the seven chromosomes of rye (Secale cereale L.) are discussed. Unequivocal classification is possible only with a standard testing system such as a translocation tester set. In the present paper a set is described which contains seven reciprocal translocations. Each chromosome participates at least once. The translocated chromosomes can be visually recognized. The size of the chromosome arms was measured and is expressed as % of the total complement length. Which chromosomes were involved in the translocations was studied by using a special graphic method based on the arm ratios of the mitotic chromosomes, and also by intercrossing followed by an analysis of the meiotic cofigurations in the F₁'s.     

Karyotypes ofMegaselia scalaris (Diptera) wild-type and translocation strains

Making use of somatic pairing of homologous chromosome arms and of balanced translocations as cytogenetic markers, the three chromosome pairs of the phorid flyMegaselia scalaris have been identified and described. From measurements of the compliments a standard karyotype was constructed. Identification of the chromosomes allows cytogenetic, phenotypic and molecular markers to be assigned to specific chromosomes. Sex linkage of t(1;2) and t(2;3) translocations define chromosome 2 as the normal sex determining chromosome pair in our translocation strains, and therefore also, probably, in the wild-type strain from which they were derived. No differences between X and Y with respect to size of arms or C-bands were detected.     

Ultrastructure of meiotic pairing in B chromosomes of Crepis capillaris

The meiotic pairing behaviour of four B isochromosomes of Crepis capillaris was studied by synaptonemal complex (SC) surface spreading of pollen mother cells. The four B chromosomes form a tightly associated group, separate from the standard chromosomes, throughout zygotene and pachytene. All four B chromosomes are also folded around their axis of symmetry, the centromere, and the eight homologous arms are closely aligned from the earliest prophase I stages. A high frequency of multivalent pairing of the four B chromosomes is observed at pachytene, in excess of 90%, mirroring the situation observed at metaphase I but exceeding the frequency expected (76.2%) on the assumption of random pairing among the eight B isochromosome arms with a single distal pairing initiation site per arm. The higher than expected frequency of multivalents is due to the occurrence of multiple pairing initiations along the B isochromosome arms, resulting in high frequencies of pairing partner switches. Pairing of the standard chromosome set is frequently incomplete in the presence of four B chromosomes, and abnormalities of SC structure such as thickening and splitting of axes and lateral elements are also frequently seen. Similarly, B chromosomes show partial pairing failure, the extent of which is correlated with pairing failure in the standard chromosome set. The B chromosomes themselves also show abnormalities of SC structure. Both standard and B chromosomes show non-homologous foldback pairing of regions that have failed to pair homologously.by D. Schweizer     

Multicolor FISH mapping of the dioecious model plant,<Emphasis Type="Italic"> Silene latifolia</Emphasis>

Silene latifolia is a key plant model in the study of sex determination and sex chromosome evolution. Current studies have been based on genetic mapping of the sequences linked to sex chromosomes with analysis of their characters and relative positions on the X and Y chromosomes. Until recently, very few DNA sequences have been physically mapped to the sex chromosomes of S. latifolia. We have carried out multicolor fluorescent in situ hybridization (FISH) analysis of S. latifolia chromosomes based on the presence and intensity of FISH signals on individual chromosomes. We have generated new markers by constructing and screening a sample bacterial artificial chromosome (BAC) library for appropriate FISH probes. Five newly isolated BAC clones yielded discrete signals on the chromosomes: two were specific for one autosome pair and three hybridized preferentially to the sex chromosomes. We present the FISH hybridization patterns of these five BAC inserts together with previously described repetitive sequences (X-43.1, 25S rDNA and 5S rDNA) and use them to analyze the S. latifolia karyotype. The autosomes of S. latifolia are difficult to distinguish based on their relative arm lengths. Using one BAC insert and the three repetitive sequences, we have constructed a standard FISH karyotype that can be used to distinguish all autosome pairs. We also analyze the hybridization patterns of these sequences on the sex chromosomes and discuss the utility of the karyotype mapping strategy presented to study sex chromosome evolution and Y chromosome degeneration.Communicated by J.S. Heslop-Harrison     

THE PROBLEM OF PLOIDY IN ECHEVERIA (CRASSULACEAE) I. DIPLOIDY IN E. CILIATA

The largely Mexican genus Echeveria is characterized by an extensive series of dysploid chromosome numbers, with every gametic number from 12 to 34 known in at least one species. Within this nearly three-fold range of numbers, the boundary between diploidy and tetraploidy is not immediately apparent. However, species of Echeveria can be hybridized in an extraordinary number of combinations, both among themselves and with related genera, and study of the morphology of the hybrids and the pairing of their chromosomes provides information that helps to identify the ploidy of the parents. This paper reports observations from study of 80 hybrids between E. ciliata (n = 25) and 73 other species and/or cytotypes. Hybrids between E. ciliata and definite diploids are all nicely intermediate morphologically, whatever the chromosome numbers. In these same hybrids, most chromosomes become involved in pairing at meiosis, and the number of paired elements (bivalents and multivalents) approaches or equals, but never exceeds, the number of chromosomes received from the lower-numbered parent. In most cells, relatively few univalents are present, sometimes none. These observations are considered to indicate that all paired elements include at least one chromosome from each parent and therefore that pairing occurs between chromosomes of different parents only (allosyndesis). Since none of the 25 gametic chromosomes of E. ciliata is able to pair with any other, although they do pair very extensively with chromosomes from many other species having a wide range of numbers, E. ciliata is considered to be diploid in spite of its relatively high chromosome number. On the other hand, hybrids of E. ciliata with definite polyploids resemble the latter much more closely in their morphology, and at meiosis most or all pairing occurs by autosyndesis between chromosomes received from the polyploid parent, while the chromosomes from E. ciliata generally remain unpaired. In these respects most, but not all, species of Echeveria having as many as 34 gametic chromosomes have the same properties as E. ciliata and also are considered to be diploid. The ancestral chromosome number in the genus is not clear, but it is probably near the upper end of the series of dysploid numbers.     

Somatic cell hybridization of Vicia faba+Petunia hybrida

Summary Isolated protoplasts of Vicia faba and Petunia hybrida have been fused by the action of Ca⁺⁺, high pH and, occasionally, PEG. The heterokaryotic stage frequently endured mitotic divisions. Only one cell was found with apparently fusing nuclei. Another heterokaryon showed asynchronous phases in the nuclear cycle. Three hybrid tissues have been identified 50 and 60 days after fusion. One of them could be propagated, is 9 months old and still rapidly proliferating. The fusion hybrids contained predominantly nuclei or chromosomes of one or the other species and a few chromosomes of the second parent. These observations were assigned to chromosome elimination which has been conclusively seen in cells containing nuclei of Petunia-type and one or two chromosomes of Vicia left in the cytoplasm. Breakage of chromosomes was the only type of chromosome mutations found in hybrid tissue.Dedicated with compliments to Professor Dr. Josef Straub on the occasion of his 67th birthday and the 17th anniversary of his directorship within the 50 years of history of the Erwin-Baur-Institut (Max-Planck-Institut für Züchtungsforschung)     

Do individual allocyclic chromosomes in metaphase reflect their interphase domains?

Summary Individual S phase allocyclic chromosomes have been analyzed in Bloom syndrome lymphocytes, in cells with an r(9), and in hypotetraploid Ehrlich mouse ascites cells treated with 1-methyl-2-benzyl hydrazine. On the basis of the following observations, we conclude that such chromosomes more or less reflect their domains in interphase: (1) The S phase allocyclic chromosomes have the same structure as S phase prematurely condensed chromatin (PCC) in fused cells; in other words they form limited areas of chromatin dots; (2) the allocyclic chromosome is the only chromosome in a metaphase plate which synthesizes DNA simultanneously with interphase nuclei; (3) the size of the allocyclic chromosomes is related to the size of the corresponding metaphase chromosome; and (4) the S phase allocyclic chromosomes resemble closely the chromosome domains in interphase made visible with biotinylated human DNA. A variety of evidence shows that most allocyclic chromosomes are simply left behind in their cycle, which presumably is caused by a deletion or inactivation of a hypothetical coiling center situated on each chromosome arm.     

Ordered arrangement and rearrangement of chromosomes during spermatogenesis in two species of planarians (Plathelminthes)

The pattern of distribution of telomeric DNA (TTAGGG), 28S rDNA, and 5S rDNA has been studied using fluorescence in situ hybridization (FISH) and primed in situ labelling during spermatogenesis and sperm formation in the filiform spermatozoa of two species of planarians, Dendrocoelum lacteum and Polycelis tenuis (Turbellaria, Plathelminthes). In both species, the positions of FISH signals found with each probe sequence are constant from cell to cell in the nuclei of mature sperm. Chromosome regions containing 5S and 28S rDNA genes are gathered in distinct bundles of spiral form. In early spermatids with roundish nuclei, the sites of a given sequence on different chromosomes remain separate. Centromeres (marked by 5S rDNA) gather into a single cluster in the central region of the slightly elongated sperm nucleus. During spermatid maturation, this cluster migrates to the distal pole of the nucleus. In Polycelis, telomeric sites gather into three distinct clusters at both ends and in the middle of the moderately elongated nucleus. These clusters retain their relative positions as the spermatid matures. All the chromosome ends bearing 28S rDNA gather only into the proximal cluster. Our data suggest that structures in the nucleus selectively recognise chromosome regions containing specific DNA sequences, which helps these regions to find their regular places in the mature sperm nucleus and causes clustering of the sites of these sequences located on different chromosomes. This hypothesis is supported by observations on elongated sperm of other animals in which a correlation exists between ordered arrangement of chromosomes in the mature sperm nucleus and clustering of sites of the same sequence from different chromosomes during spermiogenesis. Received: 15 December 1997; in revised form: 24 March 1998 / Accepted: 14 April 1998     

Relationship between relative dry mass and average band width in regions of polytene chromosomes of Drosophila

Whole-mounted polytene chromosomes from Drosophila melanogaster were prepared for high-voltage electron microscopy. Relative dry mass of chromosome regions was estimated by densitometry of electron microscopic negatives. Comparison of dry mass of regions of the male X chromosome with that of regions of associated autosomes established that dry mass values are proportional to DNA content. Relative dry mass values of regions of polytene chromosomes from salivary glands, fat body, and malpighian tubules were correlated with the average diameter of bands in these regions: as mass doubled, band width increased by a factor of approximately 2. To provide a standard for estimating absolute levels of polyteny, band widths were measured for chromosomes representing one major polytene class, 256n. These chromosomes were observed to have an average band width of 0.9 m — These observations provide limits to models of chromatin organization in bands. For each chromatid, this area can accommodate up to five chromatin fibers of 250 Å diameter. This value may represent the extent of folding of a chromatin fiber in an average band. Alternatively, a chromatin fiber of higher-order structure could have a maximum diameter of 560 Å in an average band.     

High-order structure of metaphase chromosomes: evidence for a multiple coiling model

When chromosome preparations made by the conventional air-drying method were processed with the OsO₄/TCH technique and examined by scanning electron microscopy (SEM), spiral structures in chromatids, which have been frequently observed to be present by light microscopy, were found to be composed of 30 nm fibres. In some portions these fibres appeared to be arranged in coils to form thicker fibres. When chromosome preparations were processed for SEM without air drying, chromosomes appeared to consist of fairly homogeneous thick fibrous structures measuring about 200 nm in diameter. In relatively condensed chromosomes, these 200 nm fibres appeared to be arranged perpendicular to the long axis of the chromatid. These findings suggest that chromatid spiral structures represent a regularly loosened state of the compactly spiralized 200 nm fibres which in turn consist of spiralized 30 nm fibres.     

Multiple displacement amplification of the DNA from single flow–sorted plant chromosome

A protocol is described for production of micrograms of DNA from single copies of flow‐sorted plant chromosomes. Of 183 single copies of wheat chromosome 3B, 118 (64%) were successfully amplified. Sequencing DNA amplification products using an Illumina HiSeq 2000 system to 10× coverage and merging sequences from three separate amplifications resulted in 60% coverage of the chromosome 3B reference, entirely covering 30% of its genes. The merged sequences permitted de novo assembly of 19% of chromosome 3B genes, with 10% of genes contained in a single contig, and 39% of genes covered for at least 80% of their length. The chromosome‐derived sequences allowed identification of missing genic sequences in the chromosome 3B reference and short sequences similar to 3B in survey sequences of other wheat chromosomes. These observations indicate that single‐chromosome sequencing is suitable to identify genic sequences on particular chromosomes, to develop chromosome‐specific DNA markers, to verify assignment of DNA sequence contigs to individual pseudomolecules, and to validate whole‐genome assemblies. The protocol expands the potential of chromosome genomics, which may now be applied to any plant species from which chromosome samples suitable for flow cytometry can be prepared, and opens new avenues for studies on chromosome structural heterozygosity and haplotype phasing in plants.     

Structural changes of dinoflagellate chromosomes by pronase and ribonuclease

When cells of the dinoflagellates Prorocentrum micans and Gyrodinium cohnii are exposed to the proteolytic enzyme pronase or alternatively to ribonuclease, the structure of chromosomes is markedly altered. These changes have been observed electron microscopically in thin sections and spreads. Treatment of cells with pronase removed the bulk of nonfibrillar chromosome material completely unmasking fine chromosomal DNA fibres. Pronase had similar effect also on the dense material which is in contact with chromosomes; fibrillar loops protruding from chromosomes were exposed. However, pronase had no effect on the structural integrity of chromosomes. On the contrary, treatment of cells with ribonuclease loosened the package of chromosomal fibres. Thin sections showed that the tight package of longitudinal periodic structures seen in untreated chromosome was relaxed; chromosome extended longitudinally and formed a linear array of balls. When ribonuclease-treated chromosomes were spread, they were substantially more stretched than untreated chromosomes because of uncoiling of two oppositehanded spiral chromatid bundles. The effect of ribonuclease treatment suggests that unknown RNA species have an important role in the maintenance of permanent condensation of dinoflagellate chromosomes. On the other hand, proteins removable by pronase are also present. Most probably they are not linked to the chromosome structure but represent the matrix of nuclear activity.     

Fragmentation par les rayons X de l'organisateur d'une différenciation de chromosome en écouvillon (lampbrush), chez Pleurodeles waltlii

X-rays have been used to induce heritable changes in the specific morphology of the lampbrush chromosomes in the newt Pleurodeles waltlii. The karyotype organization of female progeny of irradiated males was studied. Nine out of ten females were found to have chromosomal aberrations. In one of the nine, one of the breaks occurred at the sphere organizer, the sphere being part of the striking morphological features of chromosome IV. On irradiation the normal sphere organizer had been broken into two fragments each of which, when recombined with other chromosome breaks, still forms a sphere. The relationship of these observations to genome redundancy is discussed.