Synthesis, morphology and cytogenetics of Raphanofortii (TTRR, 2n = 38): a new amphidiploid of hybrid Brassica tournefortii (TT, 2n = 20) ×Raphanus caudatus (RR, 2n=18)

Amphidiploid Raphanofortii was synthesized by colchicinization of the F₁ hybrid Brassica tournefortii (TT, 2n = 20)×Raphanus caudatus (RR, 2n = 18). The crossability between these two species, and the cytomorphology of the F₁ plants and the amphidiploids were investigated. Intergeneric hybrids between the species were obtained only when B. tournefortii was involved as female parent. The hybrid plants were intermediate for most of the morphological attributes and showed very low pollen fertility compared to the parents. Although a majority of the pollen mother cells of the dihaploid hybrid (TR, 2n = 19) harboured univalents, a maximum of six bivalents were also observed. Of the 37 colchicine-treated F₁ plants analyzed cytologically, 21 were found to be true amphidiploids (2n = 38), whereas seven were mixoploids. Meiosis in the amphidiploids was characterized by the occurrence of 19 bivalents, though multivalents and univalents were also observed in a few cells. Most of the amphidiploid plants exhibited a fairly high pollen and seed fertility, which was further enhanced with the advancement of generations. Out of 69 plants investigated in the A₂ generation, 64 were euploids while the remaining five were aneuploids (2n = 36, 37, 39, 40 and 42). The newly synthesized Raphanofortii has great potential as a new commercial crop, as well as a bridge species for the transfer of economically important attributes of both the species to other Brassicas. Received: 2 November 1999 / Accepted: 26 March 2000     

Chloroplast DNA diversity within and among populations of the allotetraploid Prunus spinosa L.

High chloroplast DNA (cpDNA) diversity was found within and among populations of Prunus spinosa sampled from seven European deciduous forests. A study of 12% of the total chloroplast genome detected 44 mutations, which were distributed over 24 haplotypes; four were common to two or more populations and the rest were unique haplotypes. The most-abundant and widely distributed haplotype was H2 (frequency = 41% approximately). Six of the seven populations were polymorphic. All of the six polymorphic populations had ”private” haplotypes (frequency < 5%) in addition to common haplotypes. The UPGMA dendrogram demonstrated a correlation between populations and their geographical locations. The total diversity was high (h_T= 0.824) and a major portion of it was within populations (h_s= 0.663). The level of population subdivision for unordered alleles was low (G_ST= 19.5%) and for ordered alleles was lower (N_ST= 13.6%). No phylogeographic structure could be demonstrated in the present geographical scale. High polymorphism in the cpDNA of P. spinosa has to be considered carefully when planning phylogenetic studies involving this species. Received: 20 September 1999 / Accepted: 10 November 1999     

Coral growth in subtropical eastern Australia

 Extension rates of corals at two sites in subtropical eastern Australia (Solitary Islands and Lord Howe Island) were measured to determine whether growth was low relative to tropical locations. Growth was measured using alizarin staining of skeletons and X-radiographic analysis, and was compared between colonies, species, and sites. Linear extension of individual Pocillopora damicornis colonies averaged 12.4 to 16.1 mm per year at Solitary Islands and Lord Howe Island respectively, which is 50% to 80% of published values for this species at tropical sites. Similarly, average extension of most massive faviid species examined at these sites was between 2.6 mm and 4.6 mm per year, considerably lower than most values reported from lower latitudes (generally 6 mm to 10 mm per year). However, growth rates of Acropora yongei, Turbinaria frondens, and Porites heronensis were close to those of closely-related taxa from the tropics. Causal links between latitude, growth rates of coral colonies, and the potential for reef accretion remain unclear. Accepted: 22 April 1999     

Phylogenetic relationships among Oryza species revealed by AFLP markers

 The genus Oryza to which cultivated rice belongs has 22 wild species. Seventy-seven accessions of 23 Oryza species, five related genera, and three outgroup taxa were fingerprinted using amplified fragment length polymorphism (AFLP). A total of 1191 polymorphic markers were obtained using five AFLP primer combinations. AFLP data were analyzed to study species relationships using different clustering algorithms, and the resulting phenograms were tested for stability and robustness. The findings suggest a common ancestry to the genus Oryza. Moreover, the results demonstrate that: (1) evolution in Oryza has followed a polyphyletic path wherein multiple lineages underwent independent divergence after separation early in the evolution from a common ancestor/pool of related taxa; (2) newly assigned genomes, GG for O. meyeriana and HHJJ for O. ridleyi complexes, are among the most diverged in the genus; (3) CCDD tetraploids have a relatively ancient origin among the Officinalis complex; (4) O. malampuzhaensis, O. indandamanica, O. alta, and O. grandiglumis are diverged enough to deserve species status; (5) O. officinalis and O. eichingeri (CC) are putative progenitors of O. minuta ^* O. malampuzhaensis and tetraploid O. punctata, respectively, (6) O. brachyantha is most diverged species in the genus. AFLP is reliable molecular technique and provides one of the most informative approaches to ascertain genetic relationships in Oryza, which may also be true for other related species/organisms. Received: 1 July 1998 / Accepted: 2 November 1998     

A new species of the genusEudorylaimus Andrássy, 1959 (Nematoda: Qudsianematidae) from East Antarctica

 Eudorylaimus shirasei sp. nov. is described as the seventh member of the genus in the Antarctic region. The specimens were found among green algae collected near the Molodezhnaya Station of Russia, and in moss from Cape Ryugu on the Prince Olav Coast, East Antarctica. This species resembles E. similis (de Man, 1876), E. coniceps Loof, 1975 and E. imitatoris Gagarin, 1982, but differs from them in the shape of the tail and some other characteristics on the lip region, odontostyle, spicules and precloacal supplements. It is also similar to three species known from females, E. eremitus (Thorne, 1939), E. jurassicus (Altherr, 1953) and E. altherri Tjepkema et al., 1971, but differs in the features of the body length, lip region, amphids, odontostyle and vulva. The present species has multinucleate intestinal cells, which have not been so far reported in Eudorylaimus. It is possible that the multinucleation of intestinal cells has been overlooked in the previously known species of the genus. Received: 11 April 1995/Accepted: 19 June 1995     

Relationships between the chromosomes of Aegilops umbellulata and wheat

 A comparative genetic map of Aegilops umbellulata with wheat was constructed using RFLP probes that detect homoeoloci previously mapped in hexaploid bread wheat. All seven Ae. umbellulata chromosomes display one or more rearrangements relative to wheat. These structural changes are consistent with the sub-terminal morphology of chromosomes 2 U, 3 U, 6 U and 7 U. Comparison of the chromosomal locations assigned by mapping and those obtained by hybridization to wheat/Ae. umbellulata single chromosome addition lines verified the composition of the added Ae. umbellulata chromosomes and indicated that no further cytological rearrangements had taken place during the production of the alien-wheat aneuploid lines. Relationships between Ae. umbellulata and wheat chromosomes were confirmed, based on homoeology of the centromeric regions, for 1 U, 2 U, 3 U, 5 U and 7 U. However, homoeology of the centromeric regions of 4 U with wheat group-6 chromosomes and of 6 U with wheat group-4 chromosomes was also confirmed, suggesting that a re-naming of these chromosomes may be pertinent. The consequences of the rearrangements of the Ae. umbellulata genome relative to wheat for gene introgression are discussed. Received: 10 July 1997 / Accepted: 19 September 1997     

Growth of Corynebacterium glutamicum in ammonium- and potassium-limited continuous cultures under high osmotic pressure

 In order to determine the possible effect of nutrient limitations on the response of Corynebacterium glutamicum to a saline osmotic up-shock, the bacteria were grown in continuous cultures, at osmotic pressures of 0.4 osmol/kg and 1.2 osmol/kg, under ammonia and potassium limitation. At the low osmolality of 0.4 osmol/kg, the glutamate and proline levels of 15 mg/g and 5 mg/g dry weight respectively were lower than previously reported in glucose-limited continuous cultures (50 mg/g and 10 mg/g dry weight respectively). On the other hand, the internal trehalose pool was much higher at 40 mg/g dry weight. When the medium osmolality was increased to 1.2 osmol/kg by NaCl addition, under ammonia limitation, the proline content rose from 5 mg/g to 20 mg/g dry weight and the trehalose content from 40 mg/g to 70 mg/g dry weight, whereas the intracellular pool of glutamate remained essentially constant. An increase in the internal sodium content was also observed. Similar results were found for the internal pool of glutamate, proline and trehalose when C. glutamicum was grown under potassium limitations at an osmolality of 1.2 osmol/kg. There were also higher levels of sodium ions, glutamine and alanine. According to the present results, whereas proline was previously reported to be the dominantly accumulated osmoprotectant in C. glutamicum grown under glucose limitations, under ammonia and potassium limitations trehalose represented the dominantly synthesized metabolite. Received: 19 December 1995/Received revision: 9 April 1996/Accepted: 15 April 1996     

Construction of an RFLP linkage map for cultivated sunflower

 An RFLP linkage map was constructed for cultivated sunflower Helianthus annuus L., based on 271 loci detected by 232 cDNA probes. Ninety-three F₂ plants of a cross between inbred lines RHA 271 and HA 234 were used as the mapping population. These genetic markers plus a fertility restoration gene, Rf ₁, defined 20 linkage groups, covering 1164 cM of the sunflower genome. Of the 71 loci 202 had codominant genotypic segregation, with the rest showing dominant segregation. Thirty-two of the 232 probes gave multiple locus segregation. There were 39 clusters of tightly linked markers with 0 cM distance among loci. This map has an average marker-to-marker distance of 4.6 cM, with 11 markerless regions exceeding 20 cM. Received: 17 June 1997 / Accepted: 19 June 1997     

Kelp degradation by Paractora trichosterna (Thomson) (Diptera: Helcomyzidae) at sub-Antarctic South Georgia

 The Diptera are one of the dominant insect consumer groups on sub-Antarctic islands and are thought to contribute significantly to terrestrial ecological processes at many of these islands. The life-cycle of Paractora trichosterna and its contribution to kelp degradation at Husvik Harbour, South Georgia were therefore investigated in the laboratory and in two artificial wrack beds in the field. Duration of the larval stage was approximately 2 months at 10°C, during which time larvae attained a maximum individual mass of ca. 90 mg. Larvae had a relative consumption rate of 0.734 mg dry mass kelp mg dry mass larva^-1 day^-1. Based on this rate and information on larval densities of P. trichosterna, and a smaller species, Antrops truncipennis, kelp consumption was estimated to be 714–870 g dry mass kelp m^-2 over the 7-week study period. During this time, kelp dry biomass declined to 30% of its original value, both in a bed protected from trampling by vertebrates and in an exposed one. P. trichosterna was directly responsible for 12% of this loss in the protected bed and 20% in the exposed one. A. truncipennis was responsible for an additional 3% loss in the exposed bed and 8% in the protected one. These fly species therefore contributed significantly to kelp degradation. Differences in biomass of the larvae and adults of the two species between the beds suggested that P. trichosterna prefers more exposed wrack than does A. truncipennis. Received: 27 March 1995/Accepted: 4 July 1995     

Glycerol fermentation by a new 1,3-propanediol-producing microorganism:Enterobacter agglomerans

 According to their ability to synthesize 1,3-propanediol from glycerol, two species were isolated from the anoxic mud of a distillery waste-water digestor: Clostridium butyricum and Enterobacter agglomerans. The latter, a facultatively anaerobic gram-negative bacterium, is described for the first time as a microorganism producing 1,3-propanediol from glycerol. The products of glycerol conversion by E. agglomerans were identified using nuclear magnetic resonance. A 20-g/l glycerol solution was fermented mainly to 1,3-propanediol (0.51 mol/mol) and acetate (0.18 mol/mol). Ethanol, formate, lactate and succinate were formed as by-products. Gas production was very low; 1,3-propanediol production perfectly balanced the oxido-reduction state of the microorganism. Acetate was the predominant metabolite generating energy for growth. High-glycerol-concentration fermentations (71 g/l and 100 g/l) resulted in an increase of the 1,3-propanediol yield (0.61 mol/mol) at the expense of lactate and ethanol production. Specific rates of glycerol consumption and 1, 3-propanediol and acetate production increased whereas the growth rate decreased. The decrease in ATP yield was linearly correlated with the specific rate of 1,3-propanediol production. Incomplete glycerol consumption (about 40 g/l) was systematically observed when high glycerol concentrations were used. The unbalanced oxido-reduction state, the low carbon recovery and the detection of an unknown compound by HPLC observed in these cases indicate the formation of another metabolite, which is possibly an inhibitory factor. Received: 17 November 1994 / Accepted: 15 December 1994     

Brittle star fauna (Echinodermata: Ophiuroidea) of the arctic northwestern Barents sea: composition,abundance, biomass and spatial distribution

 Epibenthic brittle star assemblages were investigated on the northwestern Barents Sea shelf between 81° and 77°N in July 1991. At 9 drift stations in water depths between 80 and 360 m, series of 35–71 photographs, each depicting about 1 m² of the seabed, were taken along transects of about 150- to 300-m length to assess abundances and spatial distribution patterns of adult brittle stars (disc diameter ≥1 mm). Biomass values were derived by combining abundances with size-weight relationships and size frequencies established using specimens from trawl catches. Six brittle star species were identified on the seabed images. Ophiocten sericeum was the most abundant species on shallow shelf banks (≤100 m). Up to 2,800 individuals were counted on a single photograph; median abundances per station ranged from 32 to 524 ind.m^-2 and biomass from 0.3 to 5.0 g ash-free dry weight (AFDW) m^-2. The spatial distribution along the transects (i.e. on the 100-m scale) was, however, extremely patchy. Disc diameters of O. sericeum ranged between 1.6 mm and 15.4 mm. In deeper shelf habitats (>150 m), O. sericeum was rare or absent, and Ophiacantha bidentata dominated the brittle star fauna with median densities and biomasses of 2–49 ind.m^-2 and 0.07–1.9 g AFDW m^-2, respectively. Its disc diameters ranged from 2.9 to 14.4 mm. The other species (Ophiura sarsi, Ophiopholis aculeata, Ophioscolex glacialis, Ophiopleura borealis) occurred in distinctly lower numbers. Our findings provide further evidence that brittle stars dominate epibenthic communities on Arctic shelves and locally reach very high abundances. Dense beds of Ophiocten sericeum seem to be a general phenomenon on high-Arctic shallow shelf banks. Received: 30 March 1995/Accepted: 30 June 1995     

Model of fringing reef development in response to progressive sea level fall over the last 7000 years – (Kikai-jima, Ryukyu Islands, Japan)

 Kikai-jima in the central Ryukyu Islands of Japan is fringed by exposed terraces of Holocene reefs, which formed as a result of periodic local tectonic uplift associated with subduction/collision. The terraces form four topographically distinct features (TI-IV) around the island and represent reefs that grew to sea level at 9000–6065 y BP, 6065–3390 y BP, 3790–2630 y BP, and 2870 to 1550 y BP. The modern reef terrace has been growing since approximately 1550 y BP. The reef terraces were uplifted sequentially around 6050 y BP (4 m), 3390–3790 y BP (2.5 m), 2630–2870 y BP (1 m) and 1550 y BP (2.5 m). Five sites were studied to define reef development in response to periodic relative sea level fall and different stillstand recovery periods. Thirty coral genera and 70 species were recorded from four distinct shallow reef flat to upper reef slope and one deeper reef slope coral assemblage. Significant lateral variations in total coral abundance, genera number, diversity, and the coverage density of Acropora spp. and Faviids occur both within and between the terraces. Stratigraphically, drill core and outcrop data recorded shallowing upward sequences characterised by tabulate Acropora spp. overlying massive Porites sp. and Faviids. The biological variations may represent growth strategies responding to initial colonisation, episodic perturbation (relative sea level fall) and differing recovery times during stillstands, and indicate a reef ecosystem stable and strong enough to recover after substantial perturbations. However, this study suggests that relatively small geological changes have had substantial biological effects, and modelling indicates that such changes would have been more profound had a third factor, such as substrate angle, varied more dramatically. In such a case, the drowning growth strategy exhibited in the drill core transect may have been more prevalent, and reefs would be struggling to grow around Kikai-jima today. Accepted: 27 May 1998     

Picophytoplankton biomass, community structure and productivity in the Great Astrolabe Lagoon, Fiji

 Phytoplankton biomass, community structure and productivity of the Great Astrolabe lagoon and surrounding ocean were studied using measurements of chlorophyll concentration and carbon uptake. The contribution of picophytoplankton to biomass, productivity and community structure was estimated by size fractionation, ¹⁴C-incubation and flow cytometry analysis. Picoplankton red fluorescence was demonstrated to be a proxy for chlorophyll <3 μm. Consequently, the percentage contribution to chl a<3 μm from each picoplankton group could be calculated using regression estimated values of ψ _i (fg chl a per unit of red fluorescence). In the lagoon, average chlorophyll concentration was 0.8 mg m^-3 with 45% of phytoplankton <3 μm. Primary production reached 1.3 g C m^-2 day^-1 with 53% due to phytoplankton <3 μm. Synechococcus was the most abundant group at all stations, followed by Prochlorococcus and picoeukaryotes. At all stations, Prochlorococcus represented less than 4% of the chl a <3 μm, Synechococcus between 85 and 95%, and Picoeukaryotes between 5 and 10%. In the upper 40 m of surrounding oceanic waters, phytoplankton biomass was dominated by the >3 μm size fraction. In deeper water, the <1 μm size fraction dominated. Prochlorococcus was the most abundant picoplankton group and their contributions to the chlorophyll a<3 μm were close to that of the picoeukaryotes (50% each). Accepted: 27 May 1999     

Growth and fermentation responses of Selenomonas ruminantium to limiting and non-limiting concentrations of ammonium chloride

 The objective of this study was to assess fermentation product, growth rate and growth yield responses of Selenomonas ruminantium HD₄ to limiting and non-limiting ammonia concentrations. The ammonia half-inhibition constant for S. ruminantium in batch culture was 296 mM. Cells were grown in continuous culture with a defined ascorbate-reduced basal medium containing either 0.5, 5, 25, 50, 100 or 200 mM NH₄Cl and dilution rates were 0.07, 0.14, 0.24 or 0.40 h^-1. Ammonia was the growth-limiting nutrient when 0.5 mM NH₄Cl was provided and the half-saturation constant was 72 μM. Specific rates of glucose utilization and fermentation acid carbon formation were highest for 0.5 mM NH₄Cl. Lactate production (moles per mole of glucose disappearing) increased at the fastest dilution rate (0.40 h^-1) for 5.0 mM NH₄Cl while acetate and propionate decreased when compared to slower dilutions (0.07 and 0.14 h^-1). Lactate production remained low while acetate and propionate remained high for all dilution rates when NH₄Cl concentrations were 25 mM or greater. Yield (Y _Glc and Y _ATP) were nearly doubled when NH₄Cl was increased from 0.5 mM (25.1 g cells/mol glucose used and 13.9 g cells/mol ATP produced respectively) to the higher concentrations. Y _Glc was highest at 25 mM and 50 mM NH₄Cl (48.2 cells/mol and 43.1 cells/mol respectively) as was Y _ATP (23.2 cells/mol and 20.8 cells/mol respectively). Y _NH3 was highest at the lowest NH₄Cl concentration. The maximal fermentation product formation rate occurred at a growth-limiting ammonia concentration, while maximal glucose and ATP bacterial yields occurred at non-growth-limiting ammonia concentrations. Given the growth response of this ruminal bacterium, it is possible that maximization of ruminal bacterial yield may necessitate sacrificing the substrate degradation rate and vice versa. Received: 5 December 1995/Received revision: 2 April 1996/Accepted: 22 April 1996     

Extrinsic control of species replacement on a Holocene reef in Belize: the role of coral disease

 Well-preserved, Holocene coral reefs provide the opportunity to discriminate between models of intrinsically driven succession and extrinsically driven species replacement, especially when paleontological patterns can be combined with ecological observations of the underlying mechanisms. Rhomboid shoals in the central shelf lagoon of the Belizean Barrier Reef experienced a recent and dramatic change in community composition. Agaricia tenuifolia replaced Acropora cervicornis as the dominant coral species at 3–15 m depth along the flanks of the reefs. We tested the hypothesis that shallowing upward caused this shift in dominance. A core extracted from 0.5 m water depth on one of the shoals, Channel Cay, revealed a shallowing-upward shift in dominance from Acropora to Porites divaricata. This successional sequence was quite different from the Acropora-to-Agaricia transition observed in four cores from 6–11 m water depth. Ecological observations showed that Agaricia became the dominant at ≥3 m depth after Acropora populations were decimated by a regional outbreak of white-band disease. The Acropora-to-Agaricia transition was clearly a case of extrinsically driven species replacement rather than an intrinsically driven, successional, shallowing-upward sequence. Accepted: 14 May 1998     

Halogenating activities detected in Antarctic macroalgae

 Halogenating activities were determined in samples of 18 cultivated species of brown, red and green macroalgae from the Antarctic. Activities for the halogenating organic compounds with bromide, iodide and chloride were found. Investigated red algae (rhodophytes) showed higher brominating and iodinating activities compared to brown (phaeophytes) and green (chlorophytes) algae. The highest brominating and iodinating activities were measured in the red algae Plocamium cartilagineum (1.11±0.01 U g^-1 wet algal weight and 0.18 U g^-1 wet algal weight, respectively) and Myriogramme mangini (3.62±0.17 U g^-1 wet algal weight and 4.5 U g^-1 wet algal weight, respectively). Chlorinating activities were detected in the red alga Plocamium cartilagineum only (0.086 U g^-1 wet algal weight). Received: 12 February 1996/Accepted: 20 June 1996     

Production of L-arabitol from L-arabinose by Candida entomaea and Pichia guilliermondii

 Lignocellulosic biomass, particularly corn fiber, represents a renewable resource that is available in sufficient quantities from the corn wet milling industry to serve as a low cost feedstock for production of fuel alcohol and valuable coproducts. Several enzymatic and chemical processes have potential for the conversion of cellulose and hemicellulose to fermentable sugars. The hydrolyzates are generally rich in pentoses (D-xylose and L-arabinose) and D-glucose. Yeasts produce a variety of polyalcohols from pentose and hexose sugars. Many of these sugar alcohols have food applications as low-calorie bulking agents. During the screening of 49 yeast strains capable of growing on L-arabinose, we observed that two strains were superior secretors of L-arabitol as a major extracellular product of L-arabinose. Candida entomaea NRRL Y-7785 and Pichia guilliermondii NRRL Y-2075 produced L-arabitol (0.70 g/g) from L-arabinose (50 g/l) at 34°C and pH 5.0 and 4.0, respectively. Both yeasts produced ethanol (0.32–0.33 g/g) from D-glucose (50 g/l) and only xylitol (0.43–0.51 g/g) from D-xylose (50 g/l). Both strains preferentially utilized D-glucose>D-xylose>L-arabinose from mixed substrate (D-glucose, D-xylose and L-arabinose, 1:1:1, 50 g/l, total) and produced ethanol (0.36–0.38 g/g D-glucose), xylitol (0.02–0.08 g/g D-xylose) and L-arabitol (0.70–0.81 g/g L-arabinose). The yeasts co-utilized D-xylose (6.2–6.5 g/l) and L-arabinose (4.9–5.0 g/l) from corn fiber acid hydrolyzate simultaneously and produced xylitol (0.10 g/g D-xylose) and L-arabitol (0.53–0.54 g/g L-arabinose). Received: 24 April 1995/Received revision: 9 August 1995/Accepted: 7 September 1995     

Cell-free extract(s) of Pseudomonas putida catalyzes the conversion of cyanides,cyanates, thiocyanates,formamide, and cyanide-containing mine waters into ammonia

 Our isolate, Pseudomonas putida, is known to be capable of utilizing cyanides as the sole source of carbon (C) and nitrogen (N) both in the form of free cells and cells immobilized in calcium alginate. In the present study, the cell-free extract(s) were prepared from the cells of P. putida grown in the presence of sodium cyanide. The ability of enzyme(s) to convert cyanides, cyanates, thiocyanates, formamide and cyanide-containing mine waters into ammonia (NH₃) was studied at pH 7.5 and pH 9.5. The kinetic analysis of cyanide and formamide conversion into NH₃ at pH 7.5 and pH 9.5 by the cell-free extract(s) of P. putida was also studied. The K _m and V _max values for cyanide/formamide were found to be 4.3/8 mM and 142/227 μmol NH₃ released mg protein^-1 min^-1 respectively at pH 7.5 and 5/16.67 mM and 181/434 μmol NH₃ released mg protein^-1 h^-1 respectively at pH 9.5. The study thus concludes that the cell-free extract(s) of P. putida is able to metabolize not only cyanides, cyanates, thiocyanates, and formamide but also cyanide-containing mine waters to NH₃. Received: 10 April 1995/Received revision: 24 July 1995/Accepted: 22 August 1995     

The retrotransposon RTip1 is integrated into a novel type of minisatellite, MiniSip1, in the genome of the common morning glory and carries another new type of minisatellite, MiniSip2

 Transposable elements have often been discovered as new insertion sequences in known genes, and minisatellites are often employed as molecular markers in diagnostic and mapping studies. We compared the genes for flower pigmentation in a line of the common morning glory bearing fully colored flowers with those in two anthocyanin ^flaked mutable lines producing variegated flowers and found RFLPs at the region of the ANS gene for anthocyanin biosynthesis. The DNA rearrangements detected by the RFLPs are due to integration of a novel type of minisatellite, MiniSip1, having a long LTR retrotransposon, RTip1, inserted in the mutable lines. The structural analysis of the rearranged region revealed that the 12.4-kb RTip1 element is flanked by 5-bp target duplications within the MiniSip1 sequence and contains two LTR sequences of about 590 bp, a primer binding site for tRNA^Lys, a typical polypurine tract and another new type of minisatellite, MiniSip2. Since no long open reading frame corresponding to the gag and pol genes was found, RTip1 appears to be a defective Ty3/gypsy-like element. Interestingly, the 269-bp-long MiniSip1 element comprises two alternating motifs of 41 bp and 19 bp, whereas the 962 bp long MiniSip2 element consists of two partially alternating motifs of 86 bp and 90 bp which are partially homologous to each other. Possible evolutionary processes that may have generated the rearranged structure at the ANS gene region are also discussed. Received: 25 April 1997 / Accepted: 16 May 1997     

Use of an industrial effluent as a carbon source for denitrification of a high-strength wastewater

Denitrification of a high-strength synthetic wastewater (150 g NO^- ₃ l^-1) was carried out using a wine distillery effluent as an example of an industrial carbon source (22.7 g chemical oxygen demand l^-1). Two configurations were tested: one consisted of an acidogenesis reactor followed by a denitrifying reactor and the other was a single reactor directly fed with the raw effluents. In both cases, denitrification was achieved at a nitrate load of 9.54 g NO^- ₃ l^-1 day^-1 (2.19 g N as NO^- ₃ l^-1 day^-1) with good specific reduction rates: 32.6 mg and 35.2 mg N as NO _x  g volatile suspended solids h^-1, calculated on a single day, for the two-step and the one-step process respectively. Dissimilatory nitrate reduction to ammonium did not occur, even in the one-step process. Received: 26 October 1995/Received revision: 15 February 1996/Accepted: 20 February 1996