Poly(ethylene oxide) layers grafted to dopamine-melanin anchoring layer: stability and resistance to protein adsorption

In this study, we propose substrate-independent modification for creating a protein-repellent surface based on dopamine-melanin anchoring layer used for subsequent binding of poly(ethylene oxide) (PEO) from melt. We verified that the dopamine-melanin layer can be formed on literally any substrate and could serve as the anchoring layer for subsequent grafting of PEO chains. Grafting of PEO from melt in a temperature range 70-110 °C produces densely packed PEO layers showing exceptionally low protein adsorption when exposed to the whole blood serum or plasma. The PEO layers prepared from melt at 110 °C retained the protein repellent properties for as long as 10 days after their exposure to physiological-like conditions. The PEO-dopamine-melanin modification represents a simple and universal surface modification method for the preparation of protein repellent surfaces that could serve as a nonfouling background in various applications, such as optical biosensors and tissue engineering.     

Surfactants as Chemical Shark Repellents: Past, Present, and Future

The development of Shark Chaser by the U.S. Navy during World War II was the first serious effort to develop a chemical shark repellent. In the decade following the war reports of Shark Chaser ineffectiveness led the Office of Naval Research to search for a more efficacious shark repellent. After years without success, ONR eventually canceled the use of Shark Chaser and abandoned the search for a chemical shark repellent. In the early 1970s, interest in chemical shark repellents was renewed by the discovery of pardaxin, a natural shark repellent secreted by the Red Sea Moses sole, Pardachirus marmoratus. The surfactant-like nature of pardaxin led investigators to test the potential of various surfactants as repellents. Subsequent studies indicated that the shark repellent efficacy of the effective alkyl sulfate surfactants was due to their hydrophobic nature. Here we report tests conducted on juvenile swell sharks, Cephaloscyllium ventriosum, to determine if the noxious quality of alkyl sulfates is affected by surfactant hydrophobicity [carbon chain length and ethylene oxide (EO) groups] and counterions. Our results indicate that the aversive response of sharks to alkyl sulfate surfactants increases with carbon chain length from octyl to dodecyl, decreases with the addition of EO groups and is not affected by counterions. This study confirms that dodecyl sulfate is the most effective surfactant shark repellent, but it does not meet the Navy's potency requirement for a nondirectional surrounding-cloud type repellent of 100 parts per billion (0.1ugml^–1). Thus, dodecyl sulfate is only practical as a directional repellent such as in a squirt application. Future research should test the action of alkyl sulfates on cell membranes, the potential of other biotoxic agents, and semiochemicals in the search for an effective chemical shark repellent.     

Repellency of essential oils and their components to the human body louse, Pediculus humanus humanus

Five essential oils and nine of their components were compared to diethyl toluamide (DEET) for their repellent activity against the human body louse, Pediculus humanus humanus. The absolute or intrinsic repellency of the compounds was tested by applying the repellent to corduroy patches and comparing them with untreated patches. It was found that the most effective repellents were DEET and citronella, whose activity lasted at least 29 days. The activity of rosemary lasted at least 18 days and that of eucalyptus more than 8 days. The repellent activity of the oil components such as citronellal and geraniol lasted more than 15 and 8 days, respectively. DEET remained effective at a dilution of 1:32, geraniol at 1:8, citronella at 1:4 and rosemary and citronellal at 1:1. The comparative or standard repellency of the candidate repellents was examined with the aid of a new screening technique using hairs treated with ammonium bicarbonate which is attractive to lice. Using this technique it could be shown that the repellent activity of citronella and geraniol lasted 2 days and that of rosemary and citronellal for only one day. DEET was active for less than one day. Serial dilutions of these substances also revealed that citronella was the most potent repellent for lice, followed by citronellal, rosemary, geraniol and DEET. The differences however, were not significant.     

Plant-based insect repellents: a review of their efficacy, development and testing

Plant-based repellents have been used for generations in traditional practice as a personal protection measure against host-seeking mosquitoes. Knowledge on traditional repellent plants obtained through ethnobotanical studies is a valuable resource for the development of new natural products. Recently, commercial repellent products containing plant-based ingredients have gained increasing popularity among consumers, as these are commonly perceived as "safe" in comparison to long-established synthetic repellents although this is sometimes a misconception. To date insufficient studies have followed standard WHO Pesticide Evaluation Scheme guidelines for repellent testing. There is a need for further standardized studies in order to better evaluate repellent compounds and develop new products that offer high repellency as well as good consumer safety. This paper presents a summary of recent information on testing, efficacy and safety of plant-based repellents as well as promising new developments in the field.     

Necromone Death Cues and Risk Avoidance by the Cricket <Emphasis Type="Italic">Acheta domesticus</Emphasis>: Effects of Sex and Duration of Exposure

We document that the cricket, Acheta domesticus, avoids “necromone” chemical cues of death associated with treated surfaces and shelters (i.e., ethanol extracts of cricket bodies, oleic acid or linoleic acid). Initially we tested male responses to male body extract, oleic acid, or linoleic acid associated with shelters. Body extract was more repellent than either oleic or linoleic acid at a dose of 10 body equivalents per shelter. At 15 or 20 body equivalents/shelter extract and oleic acid were similarly repellent but linoleic acid was weaker. We next tested responses of males or females to shelters and surfaces treated with body extracts of males, females, a male-female mixture, or oleic acid. Repellency was evaluated at 1, 16, and 22 h following introduction. Body extracts elicited more immediate aversion than did authentic oleic acid (1 h). Females showed declining aversion with time (1, 16, 22 h), especially with regard to male extract. Alternatively, males showed increasing aversion with time, particularly to female extract. Both sexes showed weak responses to oleic acid at 1 h, but significant aversion at 16 and 22 h. We suggest that females may be less risk aversive as they seek out singing males holding established territories (i.e., mobility makes risk transient). Alternatively, males may respond more strongly to female necromone as this would reduce attraction of females to their territory. Finally, we consider a classic paper that documents a strong cricket repellent associated with tissue-covered perches. We provide new evidence that this repellent was likely an unsaturated fatty acid.     

Identification of Bioactive Compounds against Aedes aegypti (Diptera: Culicidae) by Bioassays and in Silico Assays

Most of the hematophagous insects act as disease vectors, including Aedes aegypti, responsible for transmitting some of the most critical arboviruses globally, such as Dengue. The use of repellents based on natural products is a promising alternative for personal protection compared to industrial chemical repellents. In this study, the repellent effect of essential oils extracted from Lippia thymoides, Lippia alba, Cymbopogon winterianus, and Eucalyptus globulus leaves was evaluated. Essential oils used showed repellent activity against Ae. aegypti in laboratory bioassays, obtaining protection rates above 70 % from 3.75 mg/mL and higher concentration for all analyzed oils. GC/MS identified 57 constituents, which were used in the ligand-based pharmacophore model to expose compounds with requirements for repellents that modulate mosquitoes behavior through odorant-binding protein 1 Ae. aegypti. Ligand-based pharmacophore model approach results suggested that repellent activity from C. winterianus, L. alba, and L. thymoides essential oils’ metabolites is related to Citronelal (QFIT=26.77), Citronelol (QFIT=11.29), Citronelol acetate (QFIT=52.22) and Geranil acetate (QFIT=10.28) with synergistic or individual activity. E. globulus essential oil's repellent activity is associated with Ledol (0.94 %; QFIT=41.95). Molecular docking was applied to understand the binding mode and affinity of the essential oils’ data set at the protein binding site. According to molecular docking, Citronelol (ChemPLP=60.98) and geranyl acetate (ChemPLP=60.55) were the best-classified compounds compared to the others and they can be explored to develop new repellents.     

Spatiotemporal dynamics of an insect population in response to chemical substances

Insect pests represent a serious problem for the agriculture. The most popular control technic is the application of insecticide. This method, however, presents serious risks to the human healthy and to the environment so that new approaches, such as the applications of natural repellent, biological control and push–pull strategies, have been attempted. In this paper, we consider a spatially-discrete system described by Coupled Map Lattices to analyze the dynamics of an insect population when some chemical – insecticide or repellent – is spread over the population. The habitat is supposed to have plenty of resources so that insect individuals only move (flee) in response to the chemical concentration. The chemical substance, in turn, spreads by diffusion and by the wind. We show that the escape behavior of the insects and the wind can reduce the effectiveness of the chemical. Furthermore, we present the corresponding continuous equations that describe the system in the macroscopic scale.     

An agent-based model to investigate the roles of attractive and repellent pheromones in ant decision making during foraging

Pharaoh's ants organise their foraging system using three types of trail pheromone. All previous foraging models based on specific ant foraging systems have assumed that only a single attractive pheromone is used. Here we present an agent-based model based on trail choice at a trail bifurcation within the foraging trail network of a Pharaoh's ant colony which includes both attractive (positive) and repellent (negative) trail pheromones. Experiments have previously shown that Pharaoh's ants use both types of pheromone. We investigate how the repellent pheromone affects trail choice and foraging success in our simulated foraging system. We find that both the repellent and attractive pheromones have a role in trail choice, and that the repellent pheromone prevents random fluctuations which could otherwise lead to a positive feedback loop causing the colony to concentrate its foraging on the unrewarding trail. An emergent feature of the model is a high level of variability in the level of repellent pheromone on the unrewarding branch. This is caused by the repellent pheromone exerting negative feedback on its own deposition. We also investigate the dynamic situation where the location of the food is changed after foraging trails are established. We find that the repellent pheromone has a key role in enabling the colony to refocus the foraging effort to the new location. Our results show that having a repellent pheromone is adaptive, as it increases the robustness and flexibility of the colony's overall foraging response.     

Approximation and characterization of molecular surfaces

The representation and characterization of molecular surfaces are important in many areas of molecular modeling. Parametric representations of protein molecular surfaces are a compact way to describe a surface, and are useful for the evaluation of surface properties such as the normal vector, principal curvatures, and principal curvature directions. Simplified representations of molecular surfaces are useful for efficient rendering and for the display of large-scale surface features. Several techniques for representing surfaces by expansions of spherical harmonic functions have been reported, but these techniques require that the radius function is single valued, that is, each ray from an origin inside the surface intersects the surface at one and only one point. A new technique is described that removes this limitation and can be used to compute surface shape properties. © 1993 John Wiley & Sons, Inc.     

Changes in the quaternary structure of amelogenin when adsorbed onto surfaces

Amelogenin is a unique protein that self‐assembles into spherical aggregates called “nanospheres” and is believed to be involved in controlling the formation of the highly anisotropic and ordered hydroxyapatite crystallites that form enamel. The adsorption behavior of amelogenin onto substrates is of great interest because protein‐surface interactions are critical to its function. We report studies of the adsorption of amelogenin onto self‐assembled monolayers containing COOH end group functionality as well as single crystal fluoroapatite, a biologically relevant surface. We found that although our solutions contained only nanospheres of narrow size distribution, smaller structures such as dimers or trimers were observed on the hydrophilic surfaces. This suggests that amelogenin can adsorb onto surfaces as small structures that “shed” or disassemble from the nanospheres that are present in solution. © 2008 Wiley Periodicals, Inc. Biopolymers 91: 103–107, 2009. This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com     

Sensory adaptation during negative chemotaxis in Myxococcus xanthus.

Myxococcus xanthus exhibits many tactic movements that require the frz signal transduction system, such as colony swarming and cellular aggregation during fruiting body formation. Previously we demonstrated that the Frz proteins control the chemotactic movements of M. xanthus (W. Shi, T. Köhler, and D. R. Zusman, Mol. Microbiol. 9:601-611, 1993). However it was unclear from that study how chemotaxis might be achieved at the cellular level. In this study, we showed that M. xanthus cells not only modulate the reversal frequency of cell movement in response to repellent stimuli but also exhibit sensory adaptation in response to the continuous presence of nonsaturating repellent stimuli. The sensory adaptation behavior requires FrzF (a putative methyltransferase) and is correlated with the methylation-demethylation of FrzCD, a methyl-accepting chemotaxis protein. These results indicate that negative chemotaxis in M. xanthus is achieved by chemokinesis plus sensory adaptation in a manner analogous to that of the free-swimming enteric bacteria.     

Evolution of larval gregariousness in relation to repellent defences and warning coloration in tree-feeding Macrolepidoptera: a phylogenetic analysis based on independent contrasts

Gregariousness in insects is often associated with aposematism, which has two distinct properties, repellent defence and warning coloration. Theoretically, both repellent defence and warning coloration are expected to facilitate the evolution of gregariousness. This paper investigates whether the likelihood for gregariousness to evolve is higher (1) in the presence of chemical/physical defence and (2) in the presence of warning coloration, in a sample of over 800 tree-living macrolepidopteran species. A new phylogenetic technique for investigating the correlation between two discrete characters, based on independent contrasts, is used. For each of nine contrasts, based on presence/absence of repellent defence that included transitions to gregariousness, the frequency of such transitions was highest in the lineage with repellent defence present. Similarly, out of 12 contrasts based on presence/absence of warning coloration 10 had the highest frequency of transitions to gregariousness in the lineage with warning coloration. Thus, gregariousness is more likely to evolve in lineages with repellent defence and in lineages with warning coloration, but it is concluded that, since these traits are strongly intercorrelated, it is very difficult to distinguish between their separate effects on the evolution of gregariousness. Our findings indicate, however, that potentially, the presence of repellent defence may be sufficient for the evolution of gregariousness.     

Finding one of a kind: advances in single-protein production

An ultimate goal for any protein production system is to express only the protein of interest without producing other cellular proteins. To date, there are only two established methods that will allow the successful expression of only the protein of interest: the cell-free in vitro protein synthesis system and the in vivo single-protein production (SPP) system. Although single-protein production can be achieved in cell-free systems, it is not easy to completely suppress the production of cellular proteins during the production of a protein of interest in a living cell. However, the finding of a unique sequence-specific mRNA interferase in Escherichia coli led to the development of the SPP system by converting living cells into a bioreactor that produces only a single protein of interest without producing any cellular proteins. This technology not only provides a new high expression system for proteins, but also offers a novel avenue for protein structural studies.     

Repellent efficacy and safety evaluation of IR3535 derivative against Aedes albopictus,Culex pipiens pallens and Aedes togoi

The IR3535 derivative (LJH158), in which the ethyl ester of IR3535 was converted to methyl ester, was synthesized and studied as a new mosquito repellent. The repellent efficacy of LJH158 was compared with that of DEET against Aedes albopictus, Culex pipiens pallens and Aedes togoi. Also, the aromatic repellent tests were conducted with mixtures of repellents and the essential oils of cinnamon, which were obtained by supercritical fluid extraction. In addition, the safety issues of LJH158 were monitored using single oral dose safety methods and eye irritation, and skin irritation tests. The results of repellent efficacy in both biting and aromatic tests and safety tests demonstrate that LJH158 has high potential to be used as a new repellent or in combination with other repellents.     

Development of a synthetic plant volatile-based attracticide for female noctuid moths. II. Bioassays of synthetic plant volatiles as attractants for the adults of the cotton bollworm, Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae)

This paper reports olfactometer studies to determine the attractiveness of synthetic equivalents of plant volatiles to Helicoverpa armigera (Hübner) moths. Synthetic volatiles identified from host plants and other volatiles reported in literature as attractants to various noctuid species were tested in a two-choice olfactometer. Of 34 single chemicals tested, only seven were significantly attractive, and six were significantly repellent. However, when presented as blends of two or more volatiles, 21 of 31 blends tested were significantly attractive, and only one was significantly repellent. The most attractive blends were those containing four to six components, including aromatic volatiles primarily found in flowers, especially 2-phenylethanol and phenylacetaldehyde and volatiles found primarily in leaves, including green leaf volatiles and terpenoids. Some general principles in blending volatiles for developing attracticides for H. armigera are presented, including the need for blend complexity, the combination of volatiles from leaves and flowers, and early consideration of pragmatic factors such as price and toxicological profile.     

Toxicity, repellency, and effects of acetamiprid on western subterranean termite (Isoptera: Rhinotermitidae)

The insecticidial and biological activity of the cyano-substituted neonicotinoid acetamiprid was determined against the western subterranean termite, Reticulitermes hesperus Banks (Isoptera: Rhinotermitidae). Acetamiprid was very active against termites in topical applications, with an LD50 = 0.02 ng per termite. Even though acetamiprid was extremely toxic in topical applications, deposits > or =50 ppm on sand were required to consistently provide >90% kill of termites within 7 d after a 1-h exposure. Termites were quickly affected by brief exposures to sand treated with 1 ppm acetamiprid and within 1 h, their locomotion was dramatically impaired. Acetamiprid was transferred from donors to recipients only when donors were held on deposits > or =50 ppm for 1 h. Deposits even as low as 1 ppm were repellent and termites failed to tunnel into treated sand, and there was no significant mortality. Exposure to acetamiprid impaired locomotion of termites as did other slow-acting neonicotinoids, such as imidacloprid. Acetamiprid was repellent at all concentrations tested, acting like type I pyrethroid treatments in soil. A new subcategory of type III soil termiticides is proposed that incorporates the sublethal and delayed effects observed in neonicotinoid insecticides, and repellency at certain concentrations.     

Secondary metabolites from nonhost plants affect the motility and viability of phytopathogenic Aphanomyces cochlioides zoospores

The motile zoospores of the damping-off pathogen Aphanomyces cochlioides aggregate on host plants (e.g., sugar beet, spinach) guided by the host-specific plant signal cochliophilin A before infection. To assess the potential role of secondary metabolites in nonhost resistance, acetone extracts of 200 nonhost traditional medicinal plants from Chinese and Bangladeshi origins were tested for the motility behaviour of A. cochlioides zoospores using a particle bioassay method. Nearly one third of the tested plant extracts exhibited diverse deleterious activities such as repellent, stimulant, motility halting and lysis against A. cochlioides zoospores. Among these active plants, an extract of the Chinese medicinal plant Dalbergia odorifera displayed potent repellent activity toward zoospores. Chromatographic separation of D. odorifera constituents revealed that the repellent activity was regulated by the cumulative effect of three motility-affecting isoflavonoids, viz. (+/-)-medicarpin (repellent at 150 microg/ml), (-)-claussequinone (stimulant at 100 microg/ml) and formononetin (stimulant and attractant at 50 microg/ml). A mixture (1:1:1, w/w/w) of these three compounds exhibited only repellent activity toward zoospores at a concentration lower than 50 microg/ml. These results suggest that nonhost plants might possess potential bioactive secondary metabolites to ward off zoosporic phytopathogens.     

Nanoscale fabrication of biomolecular layer and its application to biodevices

Biodevices composed of biomolecular layer have been developed in various fields such as medical diagnosis, pharmaceutical screening, electronic device, photonic device, environmental pollution detection device, and etc. The biomolecules such as protein, DNA and pigment, and cells have been used to construct the biodevices such as biomolecular diode, biostorage device, bioelectroluminescence device, protein chip, DNA chip, and cell chip. Substantial interest has focused upon thin film fabrication or the formation of biomaterials mono- or multi-layers on the solid surfaces to construct the biodevices. Based on the development of nanotechnology, nanoscale fabrication technology for biofilm has been emerged and applied to biodevices due to the various advantages such as high density immobilization and orientation control of immobilized biomolecules. This review described the nanoscale fabrication of biomolecular film and its application to bioelectronic devices and biochips.     

Hydrophobic duck feathers and their simulation on textile substrates for water repellent treatment

Inspired by the non-wetting phenomena of duck feathers, the water repellent property of duck feathers was studied at the nanoscale. The microstructures of the duck feather were investigated by a scanning electron microscope (SEM) imaging method through a step-by-step magnifying procedure. The SEM results show that duck feathers have a multi-scale structure and that this multi-scale structure as well as the preening oil are responsible for their super hydrophobic behavior. The microstructures of the duck feather were simulated on textile substrates using the biopolymer chitosan as building blocks through a novel surface solution precipitation (SSP) method, and then the textile substrates were further modified with a silicone compound to achieve low surface energy. The resultant textiles exhibit super water repellent properties, thus providing a simple bionic way to create super hydrophobic surfaces on soft substrates using flexible material as building blocks.     

Predicting gene ontology functions from protein's regional surface structures

Background  

Annotation of protein functions is an important task in the post-genomic era. Most early approaches for this task exploit only the sequence or global structure information. However, protein surfaces are believed to be crucial to protein functions because they are the main interfaces to facilitate biological interactions. Recently, several databases related to structural surfaces, such as pockets and cavities, have been constructed with a comprehensive library of identified surface structures. For example, CASTp provides identification and measurements of surface accessible pockets as well as interior inaccessible cavities.