Population dynamics of Fusarium oxysporum f. sp. raphani in soils of different fungistatic capacity

Abstract Population dynamics of Fusarium oxysporum f. sp. raphani PEG-4 with a resistant marker to antibiotic hygromycin B was investigated in soils of different fungistatic capacity. Germination of PEG-4 was significantly higher in a soil amended with chemical fertilizer (CF-soil) than in a soil amended with farmyard manure (FYM-soil). Thus it was concluded that CF-soil was weakly fungistatic, and FYM-soil was strongly so. The fates of PEG-4 spores in the soils were similar when PEG-4 was introduced at initial densities of 1 10¹ to 10⁷ g⁻¹. However, alteration of environmental conditions, which might induce the germination of PEG-4 spores, resulted in the soils having different effects on the fate of PEG-4. Survival of PEG-4 in CF-soil increased compared with that in control conditions, but that in FYM-soil decreased.     

Copper Sorption Behavior of Selected Soils of the Oasis in the Middle Reaches of Heihe River Basin,China

The mobility and bioavailability of copper (Cu) depends on the Cu sorption capacity of soil and also on the chemical form of Cu in soils. Laboratory batch experiments were carried out to study the sorption and distribution of Cu in nine soils differing in their physicochemical properties from the oasis in the middle reaches of Heihe river basin, China: desert soil (S-1), agricultural soils (S-2, S-3, S-8, and S-9), marshland soil (S-4), and hungriness shrub soils (S-5 and S-6). Copper sorption behavior was studied using the sorption isotherm and sequential extraction procedure. In general, the sorption capacity for Cu decreased in the order: S-4 > S-9 > S-2 > S-8 > S-3 > S-6 > S-5 > S-7 > S-1. The correlation results suggest that soils with higher CEC, silt, clay, CaCO3, and organic matter will retain Cu more strongly and in greater amounts than soils that are sandy with lower CEC, CaCO3, and organic matter. pH is not an important impact factor to Cu sorption in experimental soil samples because pH in soils used in this study had a narrow range. The distribution of sorbed Cu varied between nine soils studied and depended on both soil properties and initial added Cu concentration. There are significant differences in the distribution of Cu in each soil with the increase of initial Cu concentration. The predominance of Cu associated with the available fraction, which was over 50% of the total sorbed Cu in most cases, indicates that the change of geochemical conditions might promote the release of Cu back into soil solution thus impacting organisms in the soils. The added Cu has also the tendencies to locate in the residual fraction, which was larger than 5% of the total amount extracted from the four fractions in most soils.     

Phosphorus deficiency enhances root exudation of low-molecular weight organic acids and utilization of sparingly soluble inorganic phosphates by radish (Raghanus satiuvs L.) and rape (Brassica napus L.) plants

Root exudates were collected from radish and rape plants grown in P sufficient and P deficient nutrient solution. In radish, tartaric, malic and succinic acids were the dominant organic acids which increased between 15 times (succinic acid) and 60 times (malic acid) under P deficient conditions. In another experiment in quartz sand culture supplied with either Ca3(PO4)2 or AlPO4, radish utilized P from AlPO4 much better than from Ca3(PO4)2 whereas the opposite was true for rape. The results demonstrated the role of a particular organic acid in mobilizing sparingly soluble P and were in accordance with the preferential growth of two plants on acid (radish) and calcareous (rape) soils in China.     

Effect of green manure on Pythium spp. population and microbial communities in intensive cropping systems

Saprophytic soil-borne pathogens can be either actively suppressed by organic amendments or enhanced, depending on soil health conditions. This can be deleterious in the event of selection of a soil-borne population by previous soil management and short crop rotation. Trials were performed in the open field and in pots, using naturally infected soil from intensive crop systems, i.e., soil from fields with 8 years of strawberry cultivation. The aim was to study short-term response of Pythium and soil microbial populations to green manure. The use of green manure in these naturally infested soils, 3–10 weeks after fresh tissue incorporation, caused Pythium populations to increase concurrent with an increase in soil microbial populations, and did not result in the suppression of the pathogen. A more elaborate trial was performed under controlled conditions, amending soil with fresh wheat plant material, air-dried wheat plant material and an organic fertilizer with a high level of humic substances. Although compared to the original soil, all amendments caused a similar increase in organic matter content and small differences in soil respiration, incorporation of fresh, not decomposed, plant material strongly increased Pythium, while the organic fertilizer did not affect the original level of the pathogen population. The increase in total number of fungi and bacteria did not have any suppressive effect on the Pythium population in naturally infested soil used for this study.     

Effects of pulp mill solids and three composts on early growth of tomatoes

Compost has been proposed as a means of simultaneously diverting organic materials from landfills while producing a valuable product that improves tilth, organic matter content and nutrient supply of agricultural soils. Composts manufactured from different source materials may have markedly different properties however, even if they meet all regulatory requirements. We compared the capacity of composts made from three different combinations of organic wastes (horse manure and bedding, mink farm wastes, municipal solid waste (MSW) and sewage sludge) along with clarifier solids from a chemo-thermomechanical pulp mill, to enhance the growth of tomato (Lycopersicon esculentum L.) seedlings grown in nutrient-poor organic potting soil. Germination and seedling emergence of tomatoes, cress (Lapidium sativum L.) or radish (Raphanus sativus L.) were tested to assess phytotoxicity of the four amendments. Mink farm compost and horse manure compost stimulated root and shoot growth of tomato seedlings but MSW compost and pulp mill solids were strongly inhibitory. MSW compost and unamended potting soil also inhibited seedling emergence and pulp mill solids produced stunting and deformities in radish and cress seedlings. Both toxic constituents and nutrient imbalances may be responsible for the growth-inhibiting effects of these amendments. Application of pulp mill solids to agricultural soil without composting may lead to deleterious effects on vegetable crops.     

The role of organic amendments in wetland restorations

At the present rate of loss (since 1990), half of the remaining wetlands worldwide will be developed within ~140 years, underscoring the importance of improving the creation and restoration of wetlands. Organic amendments are sometimes used during wetland creation. To evaluate the effectiveness of adding organic amendments we used a combined numerical method to assign “scores” on five categories of evaluation metrics: plant growth, soil properties, carbon accrual, denitrification, and anaerobic processes (e.g. redox potential). We found that amendments identified as “topsoil” scored measurably higher and had consistently more positive values with fewer negative results compared to amendments identified as “allochthonous organic matter” (alOM). Organic amendments had about the same effect on soils with low soil organic carbon (<2.5%) compared to soils richer in organic carbon. Organic amendments are not uniformly effective, and in some cases may have negative side effects. For example, alOM often resulted in a loss of plant diversity. These outcomes along with site conditions should be evaluated before using organic amendments.     

Growth of Jatropha curcas on heavy metal contaminated soil amended with industrial wastes and Azotobacter. A greenhouse study

The aims of the study were to evaluate the effect of organic wastes (biosludge and dairy sludge) and biofertilizer (Azotobacter chroococcum) on the planting conditions of Jatropha curcas in metal contaminated soils. Results showed that the plants survival rate in heavy metal contaminated soil increased with addition of amendments. Treatment T6 (heavy metal contaminated soils+dairy sludge+biofertilizer) observed to be the best treatment for growth (height and biomass) as compared with the treatment T5 (heavy metal contaminated soils+biosludge+biofertilizer). In addition, organic amendments provided nutrients such as carbon, N, P and K to support plant growth and reduced the metal toxicity to plant. The present study showed that metal contaminated lands/soils could be suitably remediated by adapting appropriate measures.     

Effect of water deficit on microbial characteristics in soil amended with sewage sludge or inorganic fertilizer under laboratory conditions

The potential impact of different types of organic (sewage sludge) or inorganic (mineral fertilizer) amendments to a basic soil was investigated under dry conditions. A soil incubation experiment was carried out over 64 days; there were two fertility treatments: sewage sludge (SS) (140 t ha(-1)), mineral fertilizer (M) and an unamended control (C). Two levels of irrigation were imposed: (1) well-watered, kept at 60% of its water holding capacity, and (2) water-deficit at 6%. Available N-NO3-, N-NH4+ and P, and electrical conductivity (EC) increased in SS and M-treated soils. Under well-watered conditions activities of some enzymes (protease-BAA, phosphatase and beta-glucosidase), and microbiological properties (microbial biomass carbon, basal respiration and dehydrogenase activity) were stimulated in SS-treated soils. Under water-deficit conditions, protease-BAA, phosphatase and beta-glucosidase activities, and basal respiration were more reduced in SS than in C and M. Results showed that under severe dry conditions, soil microbial activity always remained higher in organic amended soils than when mineral fertilizer was added.     

Comparison of the effects of poultry manure and its biochar on barley growth in petroleum-contaminated soils

This study was conducted to evaluate and compare the effectiveness of two organic amendments [poultry manure (PM) and poultry manure biochar (PMB)] for the degradation of petroleum hydrocarbons in contaminated soils by barley plant at three levels of total petroleum hydrocarbons (TPHs) during 5 months under greenhouse conditions. TPHs removal efficiency and microbial respiration were shown to be higher at soil-cultivated plant than at uncultivated soil and in lowest level of contamination rather than other levels of contamination and at organic amendment treatment than unamended soil. Soil microbial respiration and TPHs degradation in the rhizosphere of barley increased by 15.64 and 12.74% for PM-amended treatment and 28.07 and 26.83% for PMB-amended treatment, respectively, in the 4% TPHs level compared with unamended treatment. Comparison of two amendments showed that in PMB treatment soil, highest dry weight, microbial respiration, and TPHs degradation potential were observed.     

Comparative analysis of microbial diversity and bacterial seedling disease‐suppressive activity in organic‐farmed and standardized commercial conventional soils for rice nursery cultivation

The outbreak of rice plant diseases can be effectively suppressed in organic farming systems. However, the mechanisms of disease suppression by organic farming systems are not well understood. When Burkholderia‐infected rice seeds were sown and cultivated on nine organic‐farmed soils which were supplied by nine independent organic rice farmers or standardized commercial conventional soils, the emergence of bacterial seedling diseases was suppressed to equivalent degrees in nine organic‐farmed soils, whereas the diseases occurred in two commercial conventional soils. In any organic or commercial conventional soil sown with healthy rice seeds as a control, the diseases did not appear. Upon physicochemical analysis of the nine organic‐farmed soils, component common to these organic‐farmed soils seemed to not be directly associated with disease‐suppressive activity. However, microbiome analyses indicated that the bacterial population in these nine organic‐farmed soils was more diverse than those in commercial conventional soils. Intriguingly, the diverse bacterial population structures of organic‐farmed soils were preserved after irrigating and sowing rice seeds, but that of commercial conventional soils was clearly changed by them. Thus, organic‐farmed soils seem to maintain robust bacterial populations despite the irrigation and seedling growth. Indeed, pathogenic Burkholderia in infected rice seeds also did not proliferate in the seedling grown on organic‐farmed soils. Taken together, the common feature of organic‐farmed soils might be the correlation between bacterial seedling disease‐suppressive activity and higher robustness of the diversified microbiome.     

Woodchip and biochar amendments differentially influence microbial responses,but do not enhance plant recovery in disturbed semiarid soils

Restoration presents a global challenge in drylands (arid and semiarid ecosystems) where uses can range from exclusive conservation to open‐pit mining and restoration practices are constrained by scarce, unpredictable precipitation, and high ambient temperatures. Adding woodchip amendments to soils is a common strategy for mitigating soil degradation as amendments may enhance soil carbon and increase plant cover. We assessed the effect of surface or incorporated woodchip addition and incorporated wood‐derived biochar on soil carbon dynamics and microbial activities as well as plant cover in semiarid soils that had been removed and replaced. We found that woodchips at the soil surface increased soil organic carbon (SOC), and both surface and incorporated woodchips increased the dissolved organic carbon (DOC) content. The incorporation of woodchips inhibited plant cover yet increased soil CO₂ efflux and dissolved organic matter stoichiometry. Surface woodchips also significantly enhanced microbial activities but not plant cover. A significant amount of the soil efflux in response to incorporating woodchips was explained by plant cover and exoenzyme activities, but this was not the case for other amendment treatments. Biochar, thought to be more resistant to decomposition, neither stimulated nor reduced microbial activities or plant cover and did not influence SOC or DOC. Our findings demonstrate that the influence of woodchip amendments on microbial processes and soil carbon dynamics depends on the location of application and that coarse fast‐pyrolysis biochar has limited influence on soil processes over a 22‐month study in a water‐limited ecosystem.     

Ammonia volatilization from tropical legume mulches and green manures on unlimed and limed soils

In the humid tropics, legumes are harvested and surface applied as mulch or incorporated as green manure. Studies on N dynamics and budgets from these systems report unaccounted losses of N. Ammonia volatilization may account for a significant percentage of these unexplained N deficits. The main objectives of this study were to: 1) determine the rate and amount of ammonia volatilization from organic amendments, both incorporated (green manure) and unincorporated (mulch), 2) compare ammonia volatilization of organic amendments on both acid (unlimed) and limed soils, and 3) correlate quality, i.e. polyphenolic and lignin concentration and carbon-to-nitrogen ratio, of the organic amendments with ammonia volatilization and net N mineralization. In an incubation experiment, ammonia volatilization losses and net N mineralization were measured from fresh leaflets of 10 legumes over a three-week period. Ammonia volatilization losses for the 10 species ranged from 3.4 to 11.8% of the total N applied in the organic amendment. Lignin content was negatively correlated to ammonia volatilization. Ammonia volatilized from mulches but not green manures, on both unlimed and limed soils, suggesting that ammonia volatilization is a surface phenomenon and not affected by soil pH. Net N mineralization was affected by species and soil pH, but was unaffected by placement (green manure or mulch). For the farmer in low-input agriculture where N tends to be limiting, volatilization losses of N from legume mulch systems could be on the same order of magnitude as crop removal.     

Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid.

Soils with a history of 2,4-dichlorophenoxyacetic acid (2,4-D) treatment at field application rates and control soils with no prior exposure to 2,4-D were amended with 2,4-D in the laboratory. Before and during these treatments, the populations of 2,4-D-degrading bacteria were monitored by most-probable-number (MPN) enumeration and hybridization analyses, using probes for the tfd genes of plasmid pJP4, which encode enzymes for 2,4-D degradation. Data obtained by these alternate methods were compared. Several months after the most recent field application of 2,4-D (approximately 1 ppm), soils with a 42-year history of 2,4-D treatment did not have significantly higher numbers of 2,4-D-degrading organisms than did control soils with no prior history of treatment. In response to laboratory amendments with 2,4-D, both the previously treated soils and those with no prior history of exposure exhibited a dramatic increase in the number of 2,4-D-metabolizing organisms. The MPN data indicate a 4- to 5-log population increase after one amendment with 250 ppm of 2,4-D and ultimately a 6- to 7-log increase after four additional amendments, each with 400 ppm of 2,4-D. Similarly, when total bacterial DNA from the soil microbial community of these samples was analyzed by using a probe for the tfdA gene (2,4-D monoxygenase) or the tfdB gene (2,4-dichlorophenol hydroxylase) a dramatic increase in the level of hybridization was observed in both soils.(ABSTRACT TRUNCATED AT 250 WORDS)     

Characteristics of Inhibition of Suppressive Soil Created hy Monoculture with Radish in the Presence of Rhizoctonia solani

Soils collected from five districts of Hawaii county were infested with Rhtzoctonia solani in small inoculum particles and successfully planted with radish to induce suppression, Suppressiveness was induced in some, but not all, replicates of all. soils. When fresh inoculum was added, suppressiveness was demonstrated in some, but not all, replicates of two soils, but not in the other three soils. Acidity of soil was not important in successful induction of suppression. Characteristics of induced suppression in soil from one site (S. Kohala) were further investigated. Reduction of microbial population by heat treatment of suppressive soil completely nullified its inhibitory effect. The populations of actinomycetes, fungi in general and Trichoderma spp. in suppressive and conducive soil were not significantly different. However, the population of bacteria in suppressive soil was almost four times higher than that in conducive soil. The survival time of R. solani in suppressive soil was shorter than that in conducive soil. Hyphae of R. solani also lysed faster in suppressive soil than in conducive soil. It is suggested that suppressiveness of the South Kohala soil created by monoculture is due to enhanced competitive pressure generated by an increased bacterial population, which in turn causes the rapid autolysis of R. solani hyphae.     

Heavy metals fractionation and organic matter mineralisation in contaminated calcareous soil amended with organic materials

Degradation of organic matter (OM) from organic amendments used in the remediation of metal contaminated soils leads to changes in soil chemical properties shortly after their addition, which may affect the soil metal distribution. The effects of two differing organic amendments on OM mineralisation and fractionation of heavy metals in a contaminated soil were investigated in an incubation experiment. The treatments were: control unamended soil, soil amended with fresh cow manure, and soil amended with a compost having a high maturity degree. The soil used was characteristic of the mining area at La Unión (Murcia, Spain) with 28% CaCO(3) and sandy-loam texture (pH 7.7; 2602 mg kg(-1)Zn; 1572 mg kg(-1)Pb). Manure and compost C-mineralisation after 56 days (24% and 3.8%, respectively) were below values reported previously for uncontaminated soils. Both amendments favoured Zn and Pb fixation, particularly the manure. Mn solubility increased at the beginning of the experiment due to a pH effect, and only Cu solubility increased through organic matter chelation in both amended soils.     

Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid.

Soils with a history of 2,4-dichlorophenoxyacetic acid (2,4-D) treatment at field application rates and control soils with no prior exposure to 2,4-D were amended with 2,4-D in the laboratory. Before and during these treatments, the populations of 2,4-D-degrading bacteria were monitored by most-probable-number (MPN) enumeration and hybridization analyses, using probes for the tfd genes of plasmid pJP4, which encode enzymes for 2,4-D degradation. Data obtained by these alternate methods were compared. Several months after the most recent field application of 2,4-D (approximately 1 ppm), soils with a 42-year history of 2,4-D treatment did not have significantly higher numbers of 2,4-D-degrading organisms than did control soils with no prior history of treatment. In response to laboratory amendments with 2,4-D, both the previously treated soils and those with no prior history of exposure exhibited a dramatic increase in the number of 2,4-D-metabolizing organisms. The MPN data indicate a 4- to 5-log population increase after one amendment with 250 ppm of 2,4-D and ultimately a 6- to 7-log increase after four additional amendments, each with 400 ppm of 2,4-D. Similarly, when total bacterial DNA from the soil microbial community of these samples was analyzed by using a probe for the tfdA gene (2,4-D monoxygenase) or the tfdB gene (2,4-dichlorophenol hydroxylase) a dramatic increase in the level of hybridization was observed in both soils.(ABSTRACT TRUNCATED AT 250 WORDS)     

重金属污染土壤原位钝化修复研究进展

重金属原位钝化技术是一种污染土壤的修复方法,指向污染土壤添加一些活性物质（钝化修复剂）,以降低重金属在土壤中的有效浓度或改变其氧化还原状态,从而有效降低其迁移性、毒性及生物有效性.本文基于原位钝化修复剂种类、研究方法、评价指标、作用机制以及风险评价等方面的研究,深入分析了该领域的研究现状和存在问题,并提出了今后研究的重点.目前广泛使用的钝化修复剂主要有粘土矿物、磷酸盐、有机堆肥及微生物材料等.由于土壤结构和组分的复杂性,钝化修复剂的作用机制尚不完全清楚,其可能的机制主要包括沉淀反应、化学吸附与离子交换、表面沉淀、有机络合和氧化还原等.今后应加强从分子水平研究重金属的钝化机制,重点关注钝化修复重金属污染土壤时存在的潜在风险以及钝化修复的长期田间效应.     

Phytostabilization potential of Jatropha curcas L. in polymetallic acid mine tailings

Greenhouse pot experiments were conducted to determine the growth response, metal tolerance, and phytostabilization potential of Jatropha curcas L The plants were grown on different degrees of multi-metal contaminated acid mine soils (T0, control; T1, moderately and T2, highly contaminated soils) with or without limestone amendments. The order of metal accumulation in J. curcas was roots>stems>leaves. The higher tolerance index (>90%) with no phytotoxic symptoms and growth reduction in T1 showed that this plant has the ability to tolerate polymetallic acid mine tailings. Further, various enzymatic and non-enzymatic antioxidants also actively involved in metal defense mechanism in J. curcas. On the other hand, to alleviate the predominant phytoavailable toxic metals such as Al, Cu, and Pb, different rates (0.1, 0.25, 0.50, and 1%) of limestone amendments were added in both T1 and T2 soils. The growth performance of J. curcas was improved due to the increase in soil pH and decrease in phytoavailable soil A1 (95%), Zn (approximately 75%), and Cu (approximately 65%) contents at 0.50% of lime addition. Based on the inherent tolerance ability of J. curcas in existing adverse environmental conditions without liming, it could be used as a suitable candidate for phytostabilization in acid mine tailings.     

Does long-term soil warming affect microbial element limitation? A test by short-term assays of microbial growth responses to labile C,N and P additions

Increasing global temperatures have been reported to accelerate soil carbon (C) cycling, but also to promote nitrogen (N) and phosphorus (P) dynamics in terrestrial ecosystems. However, warming can differentially affect ecosystem C, N and P dynamics, potentially intensifying elemental imbalances between soil resources, plants and soil microorganisms. Here, we investigated the effect of long-term soil warming on microbial resource limitation, based on measurements of microbial growth (¹⁸O incorporation into DNA) and respiration after C, N and P amendments. Soil samples were taken from two soil depths (0–10, 10–20 cm) in control and warmed (>14 years warming, +4°C) plots in the Achenkirch soil warming experiment. Soils were amended with combinations of glucose-C, inorganic/organic N and inorganic/organic P in a full factorial design, followed by incubation at their respective mean field temperatures for 24 h. Soil microbes were generally C-limited, exhibiting 1.8-fold to 8.8-fold increases in microbial growth upon C addition. Warming consistently caused soil microorganisms to shift from being predominately C limited to become C-P co-limited. This P limitation possibly was due to increased abiotic P immobilization in warmed soils. Microbes further showed stronger growth stimulation under combined glucose and inorganic nutrient amendments compared to organic nutrient additions. This may be related to a prolonged lag phase in organic N (glucosamine) mineralization and utilization compared to glucose. Soil respiration strongly positively responded to all kinds of glucose-C amendments, while responses of microbial growth were less pronounced in many of these treatments. This highlights that respiration–though easy and cheap to measure—is not a good substitute of growth when assessing microbial element limitation. Overall, we demonstrate a significant shift in microbial element limitation in warmed soils, from C to C-P co-limitation, with strong repercussions on the linkage between soil C, N and P cycles under long-term warming.     

Field Evidence of Cadmium Phytoavailability Decreased Effectively by Rape Straw and/or Red Mud with Zinc Sulphate in a Cd-Contaminated Calcareous Soil

To reduce Cd phytoavailability in calcareous soils, the effects of soil amendments of red mud, rape straw, and corn straw in combination with zinc fertilization on Cd extractability and phytoavailability to spinach, tomato, Chinese cabbage and radish were investigated in a calcareous soil with added Cd at 1.5 mg kg⁻¹. The results showed that water soluble and exchangeable Cd in soils was significantly decreased by the amendments themselves from 26% to 70%, which resulted in marked decrease by approximately from 34% to 77% in Cd concentration in vegetables. The amendments plus Zn fertilization further decreased the Cd concentration in vegetables. Also cruciferous rape straw was more effective than gramineous corn straw. In all treatments, rape straw plus red mud combined with Zn fertilization was most effective in decreasing Cd phytoavailability in soils, and it is potential to be an efficient and cost-effective measure to ensure food safety for vegetable production in mildly Cd-contaminated calcareous soils.