Bacterial Community Assemblages Associated with the Phyllosphere,Dermosphere, and Rhizosphere of Tree Species of the Atlantic Forest are Host Taxon Dependent

Bacterial communities associated with tree canopies have been shown to be specific to their plant hosts, suggesting that plant species-specific traits may drive the selection of microbial species that comprise their microbiomes. To further examine the degree to which the plant taxa drive the assemblage of bacterial communities in specific plant microenvironments, we evaluated bacterial community structures associated with the phyllosphere, dermosphere, and rhizosphere of seven tree species representing three orders, four families and four genera of plants from a pristine Dense Ombrophilous Atlantic forest in Brazil, using a combination of PCR-DGGE of 16S rRNA genes and clone library sequencing. Results indicated that each plant species selected for distinct bacterial communities in the phyllosphere, dermosphere, and rhizosphere, and that the bacterial community structures are significantly related to the plant taxa, at the species, family, and order levels. Further characterization of the bacterial communities of the phyllosphere and dermosphere of the tree species showed that they were inhabited predominantly by species of Gammaproteobacteria, mostly related to Pseudomonas. In contrast, the rhizosphere bacterial communities showed greater species richness and evenness, and higher frequencies of Alphaproteobacteria and Acidobacteria Gp1. With individual tree species each selecting for their specific microbiomes, these findings greatly increase our estimates of the bacterial species richness in tropical forests and provoke questions concerning the ecological functions of the microbial communities that exist on different plant parts.     

Trophic Segregation of Small Carnivorans (Carnivora: Mustelidae and Mephitidae) from the Southern Cone of South America

Remarkable adaptations in the Carnivora have evolved as a way of dealing with feeding competition, accentuating hypocarnivorous or hypercarnivorous morphotypes. The Carnivora is a highly successful order with 47 living species in South America. Their history in South America is recent, and includes few lineages that arrived before the Panamanian bridge was completed (procyonids), and others that arrived later (felids, mephitids). Here, we evaluated the trophic segregation of small carnivorans (Conepatus chinga, Galictus cuja, Lontra provocax, Lyncodon patagonicus, and the introduced Neovison vison) from southern South America, using a geometric morphometric approach, i.e., Principal Component and Canonical Variate Analysis, to study shape variations and t-tests to study size variation. We also performed Canonical Phylogenetic Ordination to study the association between shape, size, diet, and phylogeny. We identified C. chinga as the most hypocarnivorous member of the guild, G. cuja, L. patagonicus, and N. vison as hypercarnivores, with L. provocax in an intermediate position. Semiaquatic habits segregate Lontra provocax, and partially N. vison, from other species. Significant differences in size were observed between all species pairs, except C. chinga and N. vison. Phylogeny accounts for a very important part of morphological variance, with cladogenetic events between mustelids and mephitids responsible for almost 55 % of it. The small carnivoran guild of southern South America is represented by species adapted to different feeding strategies, with C. chinga and L. provocax preying mainly on invertebrates, G. cuja and L. patagonicus specifically on small vertebrates, and the non-native N. vison with a highly diverse diet.     

Freshwater Crustacea (Cladocera,Copepoda) of Iceland: taxonomy,ecology, and biogeography

Of the many types of freshwater bodies across Iceland (e.g., lakes, springs, rivers, and ponds), greater effort has been invested in researching the freshwater Crustacea (Cladocera, Copepoda) of more permanent, larger, and deeper water bodies than on smaller or more ephemeral sites. To address this, we described the fauna of 12 shallow freshwater bodies distributed from the coast to the central highlands of Iceland. We identified 16 species in 11 genera belonging to six families of Cladocera, and 12 species in eight genera belonging to four families of Copepoda. Five of the species we identified (Alona werestschagini, Cyclops vicinus, Daphnia cristata, Diacyclops abyssicola, and Heterocope borealis) represent new distribution records for Iceland, increasing the number of species now known from this region to 34 Cladocera and 38 Copepoda taxa. Additionally, we discuss the taxonomy of some species with doubtful taxonomical status. Six crustacean taxocenes are described, each characterized by the dominance of different taxa, with bottom sediment characteristics best explaining species assemblage structure. We evaluated the relationships between Icelandic Cladocera and Copepoda faunas and those of the adjacent Svalbard, Faroe, and Shetland Islands, Greenland, and the mainland Norway. The taxonomic composition of the Icelandic fauna is dominated by widely distributed Holarctic, and secondarily Palaearctic and Nearctic species, and is more similar to the faunas of the major North Atlantic islands (64.2–71.8 % similarity) than it is to that of continental Norway.     

Directional movement in response to altered flow in six lowland stream Trichoptera

Understanding the trait adaptations associated with mobility in Trichoptera larvae under different flow conditions would enhance the understanding of survival mechanisms under flow stress induced by spates. In stream mesocosms, we mimicked a lowland stream spate by suddenly increasing current velocity above an organic habitat patch from 10 to 30 or 50 cm/s. Subsequently, we investigated whether short-term, small-scale movements in six Trichoptera species were not random but directional and whether the type of movement was related to the magnitude of flow increase. Main types of response distinguished were as follows: (1) resistance, in which the species remained in the habitat patch, (2) upstream or downstream crawling, and (3) being dislodged from the streambed and drift downstream (vulnerability). The type of response observed was related to the species’ ecological preferences and morphological traits. The experiment showed that movement in Trichoptera larvae was directional and flow-dependent. Drift was the main mechanism observed with an increase in current velocity, but upstream crawling and aggregation in the habitat patch were observed as well. The type and magnitude of the response were highly species specific. It appeared that each combination of morphological and behavioral adaptations developed individually for each species under niche-specific conditions.     

Does morphology predict behavior? Correspondence between behavioral and morphometric data in a Tyrant‐flycatcher (Tyrannidae) assemblage in the Santa Marta Mountains,Colombia

ABSTRACT Morphology is commonly used as a predictor of ecological relationships among species when studying local assemblages of Neotropical birds. Nevertheless, most evidence supporting ecomorphological correspondence in birds comes from studies of communities and not from local assemblages and, moreover, from temperate latitudes. To increase our understanding of ecomorphological correspondence in Neotropical assemblages, we used three multivariate approaches to evaluate correspondence between morphological and foraging behavior data in a tyrant‐flycatcher assemblage (N= 12 species) in the Santa Marta Mountains in Colombia. Principal components analyses revealed similar species ordinations when using morphological measurements (beak size and shape, tarsus length, wing length, and tail length) or behavioral data (behavioral types of searching for prey and prey capture) separately. Discriminant function analyses tested the ability of morphological traits to predict foraging behavior, showing that more than 90% of all measured individuals (N= 267) were correctly classified in previously defined categories of search and attack behavior. Finally, Canonical correlation analyses revealed a significant correlation between morphological data and two independent datasets of search and attack behavior. Our results demonstrate that morphology can accurately predict ecology in an assemblage of Neotropical tyrannids, and similar results have been reported in previous studies of temperate Tyrant‐flycatchers. Our results also show that bill size and shape, wing length, and tarsus length are the best predictors of foraging behavior in this assemblage. Testing for ecomorphological correspondence in other Neotropical taxa would help identify subsets of phenotypic traits that could be used for a practical, but reliable, determination of ecological relationships within different assemblages.     

Gossypium Germplasm conservation augmented by tissue culture techniques for field collecting

Conservation and utilization ofGossypium germplasm for crop improvement depend on field-collecting seed from wild and feral populations. Since the availability of viable seed cannot always be assured during botanical expeditions, a simple tissue culture method was developed to allow the collection of living vegetative material from the field. Field-testing of this culture method in western Mexico resulted in 10% overall shoot formation from six Gossypium species; seed was not available from four of these species. Rooting the cuttings was possible, but more effective rooting procedures need to be developed for general utilization by field botanists, at least with Gossypium. The methodology will probably be broadly applicable to other plant species, particularly those that easily root from cuttings.     

Phenotypic and genotypic characteristics of Arcanobacterium haemolyticum isolated from clinical samples in a Danish hospital

Six Arcanobacterium haemolyticum strains isolated from six patients of two hospitals in Denmark were identified phenotypically, also including matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) analysis, and by genotypic methods. The latter were performed by sequencing 16S rDNA and glyceraldehyde 3-phosphate dehydrogenase encoding gene gap and by amplification of an A. haemolyticum specific region of 16S–23S rDNA intergenic spacer region and 23S rDNA. The six A. haemolyticum strains were further investigated for the presence of seven potential virulence genes encoding arcanolysin, phospholipase D, hemolysin A, CAMP factor family protein, collagen binding protein, neuraminidase A and neuraminidase H which appeared to be present in two (seven virulence genes), two (six virulence genes) and two strains (four virulence genes), respectively. The phenotypic and genotypic properties described in the present study might help to reliably identify and further characterize A. haemolyticum isolated from human patients, a species which seems to be of increasing importance.     

Occurrence of Hemocyanin in Ostracod Crustaceans

Hemocyanin is a copper-containing protein that transports O₂ in the hemolymph of many arthropod species. Within the crustaceans, hemocyanin appeared to be restricted to Malacostraca but has recently been identified in Remipedia. Here, we report the occurrence of hemocyanin in ostracods, indicating that this respiratory protein is more widespread within crustaceans than previously thought. By analyses of expressed sequence tags and by RT-PCR, we obtained four full length and nine partial hemocyanin sequences from six of ten investigated ostracod species. Hemocyanin was identified in Myodocopida (Actinoseta jonesi, Cypridininae sp., Euphilomedes morini, Skogsbergia lerneri, Vargula tsujii) and Platycopida (Cytherelloidea californica) but not in Podocopida. We found no evidence for the presence of hemoglobin in any of these ostracod species. Like in other arthropods, we identified multiple hemocyanin subunits (up to six) to occur in a single ostracod species. Bayesian phylogenetic analyses showed that ostracod hemocyanin subunit diversity evolved independently from that of other crustaceans. Ostracod hemocyanin subunits were found paraphyletic, with myodocopid and platycopid subunits forming distinct clades within those of the crustaceans. This pattern suggests that ostracod hemocyanins originated from distinct subunits in the pancrustacean stemline.     

Variation of scavenger richness and abundance between sites of high and low iceberg scour frequency in Ryder Bay,west Antarctic Peninsula

Physical disturbance, particularly from iceberg scour, is a major structuring force in polar benthic communities at shelf depths. Scouring kills and damages benthic organisms providing food for the abundant scavenging fauna of coastal Antarctic waters. This trophic group is likely to be strongly affected by changes in iceberg scouring. A baited underwater camera system was used to examine the distribution of scavenging fauna in relation to the spatial variation in exposure to iceberg impacts experienced at different iceberg scouring conditions and depths within Ryder Bay. The results indicate that the relationships between depth and scavenger abundance and assemblage composition differed between high and low scour sites. Scavenger abundance increased with depth at high scour sites and fell with depth a low scour sites. There was also significant difference in community composition between sites within each scouring condition. Scavenger species richness also exhibited an increase with depth at most sites consistent with the established pattern of declining iceberg scouring frequency with depth. Shannon–Wiener diversity increased with depth but significantly more steeply in highly scoured sites. Our results suggest that depth and exposure to icebergs interact to shape the scavenger community. The significant differences within the high and low scour groups suggest that other factors remain to be investigated and that there is probably a nonlinear relationship between scouring intensity and the favourability of a site for scavengers.     

Beyond trophic morphology: stable isotopes reveal ubiquitous versatility in marine turtle trophic ecology

The idea that interspecific variation in trophic morphology among closely related species effectively permits resource partitioning has driven research on ecological radiation since Darwin first described variation in beak morphology among Geospiza. Marine turtles comprise an ecological radiation in which interspecific differences in trophic morphology have similarly been implicated as a pathway to ecopartition the marine realm, in both extant and extinct species. Because marine turtles are charismatic flagship species of conservation concern, their trophic ecology has been studied intensively using stable isotope analyses to gain insights into habitat use and diet, principally to inform conservation management. This legion of studies provides an unparalleled opportunity to examine ecological partitioning across numerous hierarchical levels that heretofore has not been applied to any other ecological radiation. Our contribution aims to provide a quantitative analysis of interspecific variation and a comprehensive review of intraspecific variation in trophic ecology across different hierarchical levels marshalling insights about realised trophic ecology derived from stable isotopes. We reviewed 113 stable isotope studies, mostly involving single species, and conducted a meta‐analysis of data from adults to elucidate differences in trophic ecology among species. Our study reveals a more intricate hierarchy of ecopartitioning by marine turtles than previously recognised based on trophic morphology and dietary analyses. We found strong statistical support for interspecific partitioning, as well as a continuum of intraspecific trophic sub‐specialisation in most species across several hierarchical levels. This ubiquity of trophic specialisation across many hierarchical levels exposes a far more complex view of trophic ecology and resource‐axis exploitation than suggested by species diversity alone. Not only do species segregate along many widely understood axes such as body size, macrohabitat, and trophic morphology but the general pattern revealed by isotopic studies is one of microhabitat segregation and variation in foraging behaviour within species, within populations, and among individuals. These findings are highly relevant to conservation management because they imply ecological non‐exchangeability, which introduces a new dimension beyond that of genetic stocks which drives current conservation planning. Perhaps the most remarkable finding from our data synthesis is that four of six marine turtle species forage across several trophic levels. This pattern is unlike that seen in other large marine predators, which forage at a single trophic level according to stable isotopes. This finding affirms suggestions that marine turtles are robust sentinels of ocean health and likely stabilise marine food webs. This insight has broader significance for studies of marine food webs and trophic ecology of large marine predators. Beyond insights concerning marine turtle ecology and conservation, our findings also have broader implications for the study of ecological radiations. Particularly, the unrecognised complexity of ecopartitioning beyond that predicted by trophic morphology suggests that this dominant approach in adaptive radiation research likely underestimates the degree of resource overlap and that interspecific disparities in trophic morphology may often over‐predict the degree of realised ecopartitioning. Hence, our findings suggest that stable isotopes can profitably be applied to study other ecological radiations and may reveal trophic variation beyond that reflected by trophic morphology.     

Revisiting “what do tadpoles really eat?” A 10‐year perspective

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Biochemical systematics and evolution ofzea,tripsacum and related genera

Antibody systems were produced in rabbits by immunization with antigen systems from seed ofZea mays, Z. mexicana andTripsacum dactyloides. Antigen systems were generally ranked in the following order using Zeaantibody systems: Zea > Tripsacum > Elyonurus ≈ Bothriochloa > Coix ≈ Manisuris > Andro-pogon ? Triticum. Tripsacum antibody systems also ranked these antigen systems in a similar order except that Tripsacum > Zea, and Manisuris ≈ Bothriochloa ≈ Elyonurus. Some Tripsacum species produced anomalous results. Serology suggests that Zea and Tripsacum should be placed together in the subtribe Tripsacinae of the tribe Andropogoneae: the tribe Maydeae is probably an unnatural assemblage. Tripsacum and Zea have probably evolved from ancestors with affinities to the subtribes Rottboellinae and Bothriochloeae of the tribe Andropogoneae. The high degree of serological correspondence shown by Elyonurus to Zea suggests a close common ancestry, but Manisuris appears no more similar to Tripsacum than do other genera of the Rottboellinae and Bothriochloeae. By polyacrylamide gel electrophoresis, no differences were found between maize and teosinte from Mexico and north Guatemala. Teosinte from south Guatemala consistently lacked bands present in both maize and Mexican teosinte but shared no greater similarity to Tripsacum and cannot therefore be considered as tripsacoid. The high degree of band homology between maize and Mexican teosinte supports a parental relationship and it is suggested that Mexican teosinte represents the germ plasm from which maize was domesticated. Neither electro-phoretic nor serological results supported the hypothesized hybrid (viz. Zea x Manisuris) origin of Tripsacum.     

Contrasting rates of coral recovery and reassembly in coral communities on the Great Barrier Reef

Changes in the relative abundances of coral taxa during recovery from disturbance may cause shifts in essential ecological processes on coral reefs. Coral cover can return to pre-disturbance levels (coral recovery) without the assemblage returning to its previous composition (i.e., without reassembly). The processes underlying such changes are not well understood due to a scarcity of long-term studies with sufficient taxonomic resolution. We assessed the trajectories and time frames for coral recovery and reassembly of coral communities following disturbances, using modeled trajectories based on data from a broad spatial and temporal monitoring program. We studied coral communities at six reefs that suffered substantial coral loss and subsequently regained at least 50 % of their pre-disturbance coral cover. Five of the six communities regained their coral cover and the rates were remarkably consistent, taking 7–10 years. Four of the six communities reassembled to their pre-disturbance composition in 8–13 years. The coral communities at three of the reefs both regained coral cover and reassembled ten years. The trajectories of two communities suggested that they were unlikely to reassemble and the remaining community did not regain pre-disturbance coral cover. The communities that regained coral cover and reassembled had high relative abundance of tabulate Acropora spp. Coral communities of this composition appear likely to persist in a regime of pulse disturbances at intervals of ten years or more. Communities that failed to either regain coral cover or reassemble were in near-shore locations and had high relative abundance of Porites spp. and soft corals. Under current disturbance regimes, these communities are unlikely to re-establish their pre-disturbance community composition.     

Decoupling of cascading trophic interactions in a freshwater,benthic food chain

Food chain theory provides explicit predictions for equilibrium biomasses among trophic levels in food chains of different lengths. Empirical studies on freshwater benthic food chains have typically been performed on chains with up to three levels and in field experiments with limited spatial and temporal scale. Here we use a natural snapshot experiment approach to study equilibrium biomass and abundance among trophic levels in natural ponds differing only with respect to fish assemblage structure. Forty-four ponds were surveyed for their densityand biomass of fish, snails and periphyton. Ponds were divided into three categories based on fish assemblage: ponds with no fish (two trophic levels), ponds with molluscivorous fish (three trophic levels) and ponds that also had piscivorous fish (four trophic levels). Ponds without fish had a high density and biomass of snails and a low biomass of periphyton, whereas snails were scarce and periphyton biomass was high in ponds with molluscivorous fish. In the presence of piscivores, molluscivore populations consisted of low numbers of large individuals. Snail assemblages in piscivore ponds were characterised by relativelyhigh densities of small-bodied detritivorous species and periphyton biomass was not significantlydifferent from ponds with three trophic levels. Thus, predictions from classic food chain theory were upheld in ponds with up to three trophic levels. In ponds with four trophic levels, however, there was a decoupling of the trophic cascade at the piscivore-molluscivore level. Gape-limited piscivory, predation on snails by molluscivores that have reached an absolute size refuge from predation, and changes in food preferences of the dominant snails are suggested to explain the observed patterns.     

Taxonomic and phylogenetic significance of seed coat microsculpturing in Mentzelia (Loasaceae) in Wyoming and adjacent western states

Six hundred seeds belonging to the genusMentzelia (Loasaceae) were examined using the Scanning Electron Microscope. The seeds represented all six sections of the genus and approximately 76% of the total number of species from northern Mexico and western United States. Emphasis was placed on seed material from Wyoming and adjoining states. Ovule serial sectioning was done to determine testa ontogeny. In all cases seed surface structures could be related to excrescences developing from the integument cells. Six basic seed coat relief features could be distinguished, corresponding to the six sections in the genus. Minor variations in the basic types are constant and characteristic for species or, in very few instances, for species groups. A dendrogram was constructed from the seed testa data which supports the phylogeny established from chromosomal and morphological data. Practical application of seed coat microcharacter specificity to identification ofMentzelia seeds from prehistoric sites is suggested.     

Biological features of an aestival pond in Western Canada

The seasonal changes in flora and fauna in an aestival pond in central Alberta, Canada, were studied through a complete annual cycle during which an exceptional decrease in water volume occurred in response to lower than normal rainfall. Substantial changes took place between successive summers in the species composition of the phytoplankton, Rotifera, Oligochaeta, Copepoda and Zygoptera. Some of the incoming species, particularly Chaetogaster diaphanus (Oligochaeta) and three species of Lestes (Zygoptera) are often associated with more temporary habitats of the region. The instability of species composition and productivity of the community is discussed in terms of the trophic position of aestival lakes and ponds.     

Atlas of foliar surface features in woody plants,IX. Betulaceae of eastern United States

Scanning electron microscopy was used to examine foliar surface features such as cuticular patterns, epicuticular wax, and trichome types in species ofAlnus, Betula, Carpinus, Corylus, andOstrya. Six trichome types are recognized in this survey, four non-glandular (acicular, filiform, aduncate, subulate) and two glandular (stipitate gland and peltate scale). The distribution of these trichomes among the genera supports the recognition of two tribes, Betuleae (Alnus andBetula) and Coryleae (Carpinus, Corylus, andOstrya). Trichome morphology can be an important supportive taxonomic character in determining evolutionary relationships.