草菇不同菌株木聚糖酶xyn基因的表达及其酶活性分析

木聚糖酶是半纤维素酶系的重要组成部分,能够分解水稻、小麦等农作物秸秆中的半纤维素。研究探讨木聚糖酶相关基因及其功能,为进一步探讨木聚糖酶与草菇生物转化率之间的关系提供理论依据。首先通过生物信息学手段构建了草菇2个木聚糖酶基因xyn1和xynII编码氨基酸序列的系统进化树,然后从生物转化率不同的草菇菌株分别提取各自的RNA,反转录为cDNA后,采用实时荧光定量PCR技术分析了xyn1和xynII基因的转录表达情况;最后应用DNS法对这些菌株中的木聚糖酶活性进行了测定。研究结果表明,xyn1编码的氨基酸序列与草腐菌相似性较高,而xynII编码的氨基酸序列与木腐菌遗传差异较小。在木聚糖酶活性测定和实时荧光定量PCR结果中,不同菌株的木聚糖酶活性趋势与xynII的转录表达趋势相似,均呈现依次递减。草菇的木聚糖酶活性与其生物转化率之间存在正相关性,推测草菇不同菌株木聚糖酶活性差异可能表现在转录水平上的差异。     

The Hsk1(Cdc7) replication kinase regulates origin efficiency

Origins of DNA replication are generally inefficient, with most firing in fewer than half of cell cycles. However, neither the mechanism nor the importance of the regulation of origin efficiency is clear. In fission yeast, origin firing is stochastic, leading us to hypothesize that origin inefficiency and stochasticity are the result of a diffusible, rate-limiting activator. We show that the Hsk1-Dfp1 replication kinase (the fission yeast Cdc7-Dbf4 homologue) plays such a role. Increasing or decreasing Hsk1-Dfp1 levels correspondingly increases or decreases origin efficiency. Furthermore, tethering Hsk1-Dfp1 near an origin increases the efficiency of that origin, suggesting that the effective local concentration of Hsk1-Dfp1 regulates origin firing. Using photobleaching, we show that Hsk1-Dfp1 is freely diffusible in the nucleus. These results support a model in which the accessibility of replication origins to Hsk1-Dfp1 regulates origin efficiency and provides a potential mechanistic link between chromatin structure and replication timing. By manipulating Hsk1-Dfp1 levels, we show that increasing or decreasing origin firing rates leads to an increase in genomic instability, demonstrating the biological importance of appropriate origin efficiency.     

Transduction of bacteriophage Mu by bacteriophage T1.

Phage T1 transduces phage Mu PFU from Mu-lysogenic donor cells to sensitive recipient cells. The efficiency of transduction depends on the chromosomal location of the Mu prophage. T1, therefore, appears to package different regions of the bacterial chromosome with different efficiencies. Although T1 transduces bacterial markers with different efficiencies, there is no direct correlation between the efficiency of transduction of a bacterial marker and the efficiency of transduction of Mu PFU from donor cells with the Mu prophage located in that marker.     

Combining a modelling with a genetic approach in establishing associations between genetic and physiological effects in relation to phosphorus uptake

The Pup1 locus confers tolerance to phosphorus (P) deficiency in rice (Oryza sativa L.). Transferring the Pup1 locus to an intolerant genotype increased P uptake by a factor 3 to 4. Lines with the Pup1 locus maintained higher root growth rates under P deficiency, but only as they started to diverge from intolerant lines in P uptake. It was thus not possible to determine if differences in root growth preceded and caused differences in P uptake or whether high root growth was the result of higher external P uptake efficiency (P influx per root size). The purpose of this paper is to review experimental evidence on the effect of Pup1 in light of recent results in modelling cause-and-effect relations between root growth, external efficiency and P uptake. Model simulations suggested that only very small changes in factors enhancing root growth were needed to explain the effect of Pup1 on P uptake. A 22% increase in root fineness or in internal P utilization efficiency (root dry matter per root P) was sufficient to triple P uptake . External root efficiency had to increase by 33 to account for the effect of Pup1. However, the most noticeable effect of increases in external efficiency was a subsequent stimulation of root growth that contributed eight times more to final P uptake compared to the change in external efficiency. Comparisons of model simulations with empirical data suggested that measured differences in external efficiency between Nipponbare and NIL-Pup1 were sufficiently large to account for the increase in P uptake. A segregation analysis using several pairs of contrasting NILs (at the Pup1 locus) further confirmed this as Pup1 co-segregated with external efficiency but not with seedling root growth or internal efficiency.     

Functional ecology of a blue light photoreceptor: effects of phototropin-1 on root growth enhance drought tolerance in Arabidopsis thaliana

* The blue light photoreceptor phototropin-1 has been shown to enhance fitness in Arabidosis thaliana under field conditions. Here, we ask whether performance consequences of phototropin-1 reflect its impact on root growth and drought tolerance. * We used a PHOT1-GFP gene construct to test whether phototropin-1 abundance in roots is highest at shallow soil depths where light penetration is greatest. We then compared root growth efficiency and size at maturity between individuals with and without functional phototropin-1. Comparisons were made under wet and dry conditions to assess the impact of phototropin-1 on drought tolerance. * Phototropin-1 was most abundant in upper root regions and its impact on root growth efficiency decreased with soil depth. Roots of plants with functional phototropin-1 made fewer random turns and traveled further for a given length (higher efficiency) than roots of phot1 mutants. In dry (but not wet) soil, enhancement of root growth efficiency by phototropin-1 increased plant size at maturity. * Results indicate that phototropin-1 enhances performance under drought by mediating plastic increases in root growth efficiency near the soil surface.     

Motor Adaptations to Pain during a Bilateral Plantarflexion Task: Does the Cost of Using the Non-Painful Limb Matter?

During a force-matched bilateral task, when pain is induced in one limb, a shift of load to the non-painful leg is classically observed. This study aimed to test the hypothesis that this adaptation to pain depends on the mechanical efficiency of the non-painful leg. We studied a bilateral plantarflexion task that allowed flexibility in the relative force produced with each leg, but constrained the sum of forces from both legs to match a target. We manipulated the mechanical efficiency of the non-painful leg by imposing scaling factors: 1, 0.75, or 0.25 to decrease mechanical efficiency (Decreased efficiency experiment: 18 participants); and 1, 1.33 or 4 to increase mechanical efficiency (Increased efficiency experiment: 17 participants). Participants performed multiple sets of three submaximal bilateral isometric plantarflexions with each scaling factor during two conditions (Baseline and Pain). Pain was induced by injection of hypertonic saline into the soleus. Force was equally distributed between legs during the Baseline contractions (laterality index was close to 1; Decreased efficiency experiment: 1.16±0.33; Increased efficiency experiment: 1.11±0.32), with no significant effect of Scaling factor. The laterality index was affected by Pain such that the painful leg contributed less than the non-painful leg to the total force (Decreased efficiency experiment: 0.90±0.41, P<0.001; Increased efficiency experiment: 0.75±0.32, P<0.001), regardless of the efficiency (scaling factor) of the non-painful leg. When compared to the force produced during Baseline of the corresponding scaling condition, a decrease in force produced by the painful leg was observed for all conditions, except for scaling 0.25. This decrease in force was correlated with a decrease in drive to the soleus muscle. These data highlight that regardless of the overall mechanical cost, the nervous system appears to prefer to alter force sharing between limbs such that force produced by the painful leg is reduced relative to the non-painful leg.     

Molecular dynamics of the transition from L-selectin- to beta 2-integrin-dependent neutrophil adhesion under defined hydrodynamic shear.

Homotypic adhesion o2 neutrophils stimulated with chemoattractant is analogous to capture on vascular endothelium in that both processes depend on L-selectin and beta 2-integrin adhesion receptors. Under hydrodynamic shear, cell adhesion requires that receptors bind sufficient ligand over the duration of intercellular contact to withstand hydrodynamic stresses. Using cone-plate viscometry to apply a uniform linear shear field to suspensions of neutrophils, we conducted a detailed examination of the effect of shear rate and shear stress on the kinetics of cell aggregation. A collisional analysis based on Smoluchowski's flocculation theory was employed to fit the kinetics of aggregation with an adhesion efficiency. Adhesion efficiency increased with shear rate from approximately 20% at 100 s-1 to approximately 80% at 400 s-1. The increase in adhesion efficiency. Adhesion efficiency increased with shear rate from approximately 20% at 100 s-1 to approximately 80% at 400 s-1. The increase in adhesion efficiency with shear was dependent on L-selectin, and peak efficiency was maintained over a relatively narrow range of shear rates (400-800 s-1) and shear stresses (4-7 dyn/cm2). When L-selectin was blocked with antibody, beta 2-integrin (CD11a, b) supported adhesion at low shear rates (< 400 s-1). The binding kinetics of selectin and integrin appear to be optimized to function within discrete ranges of shear rate and stress, providing an intrinsic mechanism for the transition from neutrophil tethering to stable adhesion.     

不同播期冬小麦氮素出籽效率与氮素利用及转运的相关性

为探讨不同播期冬小麦氮素出籽效率与氮素利用及转运的关系,在2014—2016年2个生长季,比较了不同播期(S₁:9月24日;S₂:10月1日;S₃:10月8日;S₄:10月15日;S₅:10月22日)冬小麦氮素出籽效率、氮素利用和转运的差异及相互间的关系.结果表明: 籽粒产量和单位面积粒数在不同播期处理间未发生显著差异.推迟播期降低了地上部氮素积累量和穗部氮素积累量,从而降低了氮素吸收效率,但明显提高了氮素利用效率和氮素出籽效率.氮素出籽效率与氮素利用效率呈正相关,而与氮素吸收效率呈负相关,与氮素利用率无显著相关关系.氮素营养指数随播期推迟趋于最佳状态,与氮素出籽效率的改善展现出同步性.推迟播期显著降低了花前营养器官氮素转移量和花后氮素积累量,但明显改善了花前营养器官氮素转运效率.氮素出籽效率与氮素转运效率之间存在正相关关系,说明氮素转运效率的改善一定程度上有利于穗部氮素生产籽粒能力的提升.综合来看,适当推迟播期减少了氮素吸收,但提高了氮素利用效率和氮素出籽效率,改善了氮素供应状态.研究结果为本地区冬小麦生产中氮素减施增效的实施提供了理论依据.     

Protein secretion from Saccharomyces cerevisiae directed by the prepro-alpha-factor leader region

The Saccharomyces cerevisiae secretory process was studied by evaluating secretion efficiency, processing efficiency, and the efficiency of protein folding for hybrid proteins containing the yeast prepro-alpha-factor leader region. Secretion of three proteins, beta-endorphin, calcitonin, and a consensus alpha-interferon (IFN-Con1), were compared in terms of secretion efficiency into the culture medium, beta-Endorphin and calcitonin, both small proteins, were found to be efficiently secreted from logarithmically grown cells. In contrast, the larger IFN-Con1 accumulated in the periplasmic space and cell wall. The glycosylated, unprocessed prepro-alpha-factor/IFN-Con1 fusion protein was also found to be secreted into the culture medium. The presence of (Glu-Ala) dipeptides in the alpha-factor spacer peptide increased the efficiency of cleavage at Lys-Arg in the prepro-alpha-factor/IFN-Con1 protein fusion. Purified secreted IFN-Con1 was structurally characterized to determine the effect of passage through the yeast secretory pathway on the fidelity and efficiency of protein folding. The disulfide structure of the secreted protein was found to be identical with that reported for the native human alpha-interferons.     

苜蓿中华根瘤菌代谢组学样品制备方法的研究

代谢组样品制备是代谢组学研究的基础。本文以维生素B12生产菌株苜蓿中华根瘤菌Sinorhizobium meliloti 320为研究对象,通过检测细胞损伤、ATP泄漏、代谢物回收效率以及细胞代谢淬灭效率综合评价细胞淬灭方法,同时对5种提取试剂的提取效率进行比较优化胞内代谢物的提取方法。最终获得苜蓿中华根瘤菌S.meliloti 320的胞内代谢组学样品制备较佳条件:即-20℃40%甲醇淬灭细胞,过滤收集淬灭细胞,甲醇/乙腈/水(体积比为2∶2∶2,外加0.1%的甲酸)与50%甲醇相结合提取胞内代谢物。实验结果显示-20℃的40%甲醇(通过过滤收集细胞)对细胞膜的损伤较小,且细胞代谢淬灭效率和回收效率较高;甲醇/乙腈/水(体积比为2∶2∶2,外加0.1%的甲酸)与50%的甲醇对胞内代谢物的提取效率较高且有互补作用。     

Protein complex Ppz1p/Hal3p and the efficiency of nonsense suppression in yeasts <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis>

It is known that the efficiency of nonsense suppression in yeasts is controlled both genetically and epigenetically. Since many components of translation machinery are represented by phosphoproteins, the efficiency depends, in particular, on the activity of kinases and phosphatases that include the Ppz1p/Hal3p complex. It contains Ppz1p phosphatase, which is a catalytic subunit, and Hal3p that negatively regulates its function. The aim of this work was to study the mechanisms which relate the activity of Ppz1p/Hal3p complex to nonsense suppression efficiency. In this study, we used a genetic approach implicating the analysis of nonsense suppression phenotype of the strains overexpressing HAL3 or PPZ1 genes and also bearing deletions or mutant alleles of genes, which presumably could participate in the manifestation of these overexpressions. We have shown that Hal3p inhibits not only Ppz1p but also the homologous phosphatase Ppz2p. Our data indicate that Ppz2p is also involved in the control of nonsense suppression efficiency. In the course of search for Ppz1p target protein, it was shown that Ppz1p dephosphorylates at least two proteins involved in translation. Moreover, Ppz1p affects the efficiency of nonsense suppression not only due to its phosphatase activity but also due to another mechanism triggered by its interaction with Hsp70 chaperones.     

Effects of Mechanized,Deep Application of Slow-Release Fertilizer on Yield and Nitrogen,Phosphorus, and Potassium Utilization of Direct-Seeded Rice

Compared with the standard method of manual fertilizer broadcasting (MFB), mechanized hill-drilling direct-seeding with deep application of slow-release nitrogen fertilizer (MHDDF) is an efficient method to integrate both fertilization and seeding. However, there are few studies that combine the use of slow-release fertilizer with MHDDF. We sought to explore the combined effect of MHDDF with slow-release fertilizer on rice yield and nitrogen, phosphorus, and potassium utilization, compared to MFB. We compared three different MHDDF methods (D30: 450 kg ha^?1, D40: 600 kg ha^?1, D50: 750 kg ha^?1), with one MFB method (B50: 750 kg ha^?1), and one control (CK: 0 kg ha^?1). We found that the yield of all MHDDF method was higher than that of both the MFB method. Yield was the highest in the D50 treatment and was 14.14–46.03% higher than that in B50 treatment. Biomass accumulation, nutrient accumulation, and nutrient use efficiency were similarly higher in MHDDF method than both MFB and CK. Compared to B50, the D50 treatment increased nitrogen recovery efficiency by 170.53–231.50%, phosphorus recovery efficiency by 480.00–724.25%, and potassium recovery efficiency by 201.55–169.59%. Overall, we found that combining MHDDF with slow-release fertilizer was an effective method to increase rice yield and nutrient use efficiency compared with MFB.

     

水稻冠层光截获、光能利用与产量的关系

以两优培九和武香粳14号水稻品种为材料,在不同栽插密度和施氮水平下进行2年田间试验,研究水稻冠层光合有效辐射(PAR)截获率、光能利用率与水稻产量的关系.结果表明： 分蘖期至成熟期,各处理水稻冠层平均PAR反射率为3.45%,其中,分蘖期至抽穗期的冠层反射PAR占冠层总PAR损失的10.90%,显著小于抽穗期至成熟期的22.06%.分蘖期至成熟期的冠层PAR转化率随栽插密度的增加而减少,随施氮量的增加而增大;分蘖期至抽穗期的冠层PAR转化率高于抽穗期至成熟期.在分蘖期至成熟期,冠层PAR利用率随栽插密度和施氮量的增加而增大,各处理中两优培九的平均PAR利用率(1.83 g·MJ^-1)显著高于武香粳14(1.42 g·MJ^-1);武香粳14因生育期较长,分蘖期至成熟期的入射PAR及中、高栽插密度处理的PAR截获量均高于两优培九.水稻不同生长阶段冠层PAR截获率和利用率与产量呈显著正相关,PAR转化率与产量也呈正相关,但相关性不显著.因此,在保持较高PAR截获率的基础上提高冠层PAR转化率,进而提高冠层PAR利用率,有利于水稻高产.     

Kinetics of activated thrombin-activatable fibrinolysis inhibitor (TAFIa)-catalyzed cleavage of C-terminal lysine residues of fibrin degradation products and removal of plasminogen-binding sites

Partial digestion of fibrin by plasmin exposes C-terminal lysine residues, which comprise new binding sites for both plasminogen and tissue-type plasminogen activator (tPA). This binding increases the catalytic efficiency of plasminogen activation by 3000-fold compared with tPA alone. The activated thrombin-activatable fibrinolysis inhibitor (TAFIa) attenuates fibrinolysis by removing these residues, which causes a 97% reduction in tPA catalytic efficiency. The aim of this study was to determine the kinetics of TAFIa-catalyzed lysine cleavage from fibrin degradation products and the kinetics of loss of plasminogen-binding sites. We show that the k(cat) and K(m) of Glu(1)-plasminogen (Glu-Pg)-binding site removal are 2.34 s(-1) and 142.6 nm, respectively, implying a catalytic efficiency of 16.21 μm(-1) s(-1). The corresponding values of Lys(77)/Lys(78)-plasminogen (Lys-Pg)-binding site removal are 0.89 s(-1) and 96 nm implying a catalytic efficiency of 9.23 μm(-1) s(-1). These catalytic efficiencies of plasminogen-binding site removal by TAFIa are the highest of any TAFIa-catalyzed reaction with a biological substrate reported to date and suggest that plasmin-modified fibrin is a primary physiological substrate for TAFIa. We also show that the catalytic efficiency of cleavage of all C-terminal lysine residues, whether they are involved in plasminogen binding or not, is 1.10 μm(-1) s(-1). Interestingly, this value increases to 3.85 μm(-1) s(-1) in the presence of Glu-Pg. These changes are due to a decrease in K(m). This suggests that an interaction between TAFIa and plasminogen comprises a component of the reaction mechanism, the plausibility of which was established by showing that TAFIa binds both Glu-Pg and Lys-Pg.     

The 5' UTR of HIV-1 full-length mRNA and the Tat viral protein modulate the programmed -1 ribosomal frameshift that generates HIV-1 enzymes

Translation of the full-length messenger RNA (mRNA) of the human immunodeficiency virus type 1 (HIV-1) generates the precursor of the viral enzymes via a programmed -1 ribosomal frameshift. Here, using dual-luciferase reporters, we investigated whether the highly structured 5' untranslated region (UTR) of this mRNA, which interferes with translation initiation, can modulate HIV-1 frameshift efficiency. We showed that, when the 5' UTR of HIV-1 mRNA occupies the 5' end of the reporter mRNA, HIV-1 frameshift efficiency is increased about fourfold in Jurkat T-cells, compared with a control dual-luciferase reporter with a short unstructured 5' UTR. This increase was related to an interference with cap-dependent translation initiation by the TAR-Poly(A) region at the 5' end of the messenger. HIV-1 mRNA 5' UTR also contains an internal ribosome entry site (IRES), but we showed that, when the cap-dependent initiation mode is available, the IRES is not used or is weakly used. However, when the ribosomes have to use the IRES to translate the dual-luciferase reporter, the frameshift efficiency is comparable to that of the control dual-luciferase reporter. The decrease in cap-dependent initiation and the accompanying increase in frameshift efficiency caused by the 5' UTR of HIV-1 mRNA is antagonized, in a dose-dependent way, by the Tat viral protein. Tat also stimulates the IRES-dependent initiation and decreases the corresponding frameshift efficiency. A model is presented that accounts for the variations in frameshift efficiency depending on the 5' UTR and the presence of Tat, and it is proposed that a range of frameshift efficiencies is compatible with the virus replication.     

Reduced Topological Efficiency in Cortical-Basal Ganglia Motor Network of Parkinson's Disease: A Resting State fMRI Study

Parkinson''s disease (PD) is mainly characterized by dopamine depletion of the cortico-basal ganglia (CBG) motor circuit. Given that dopamine dysfunction could affect functional brain network efficiency, the present study utilized resting-state fMRI (rs-fMRI) and graph theoretical approach to investigate the topological efficiency changes of the CBG motor network in patients with PD during a relatively hypodopaminergic state (12 hours after a last dose of dopamimetic treatment). We found that PD compared with controls had remarkable decreased efficiency in the CBG motor network, with the most pronounced changes observed in rostral supplementary motor area (pre-SMA), caudal SMA (SMA-proper), primary motor cortex (M1), primary somatosensory cortex (S1), thalamus (THA), globus pallidus (GP), and putamen (PUT). Furthermore, reduced efficiency in pre-SMA, M1, THA and GP was significantly correlated with Unified Parkinson''s Disease Rating Scale (UPDRS) motor scores in PD patients. Together, our results demonstrate that individuals with PD appear to be less effective at information transfer within the CBG motor pathway, which provides a novel perspective on neurobiological explanation for the motor symptoms in patients. These findings are in line with the pathophysiology of PD, suggesting that network efficiency metrics may be used to identify and track the pathology of PD.     

Clarification of yeast by colloidal gas aphrons

Summary Colloidal gas aphrons or CGAs were employed in a flotation column for the recovery of yeast from aqueous solutions. The CGAs sparging rate was a critical factor that governed the efficiency of the process. The separation efficiency was less than 30% at a sparging rate of 1.3 ml sec^–1 and increased exponentially up to 90% as the sparging rate was increased to 2.4 ml sec^–1. Whereas there was no appreciable change in the separation efficiency with CGAs sparging rates for high initial feed concentrations, the maximum achievable efficiency decreased with an increase in the initial feed concentration. In general, a decrease in pH will improve the separation efficiency.     

Interplay between VGLUT isoforms and endophilin A1 regulates neurotransmitter release and short-term plasticity

Vesicular glutamate transporters (VGLUTs) are essential for filling synaptic vesicles with glutamate and mammals express three VGLUT isoforms (VGLUT1-3) with distinct spatiotemporal expression patterns. Here, we find that neurons expressing VGLUT1 have lower release probability and less short-term depression than neurons expressing VGLUT2 or VGLUT3. Investigation of the underlying mechanism identified endophilin A1 as a positive regulator of exocytosis whose expression levels are positively correlated with release efficiency and showed that the differences in release efficiency between VGLUT1- and VGLUT2-expressing neurons are due to VGLUT1's ability to bind endophilin A1 and inhibit endophilin-induced enhancement of release probability.     

Electroporation-mediated transfection of Acholeplasma laidlawii with mycoplasma virus L1 and L3 DNA.

In contrast to mycoplasma virus L1 and L2 circular DNA, mycoplasma virus L3 linear DNA is not biologically active in polyethylene glycol-mediated transfection. Electroporation of Acholeplasma laidlawii, however, leads to plaque formation after incubation with L3 DNA. The efficiency of electroporation-mediated transfection is 1/10 that of polyethylene glycol-mediated transfection as estimated with L1 DNA. Trypsin treatment of cells before DNA addition increases the efficiency of DNA uptake.