Fungal contamination of some imported spices

Seventeen imported raw spice samples obtained from retail outlets were examined for spoilage mould profile. A total of 665 fungal isolates, representing 14 species, were recovered and identified from dried and ground spice samples on several media using standard dilution plate method. Moisture content varied greatly among various samples and were generally high. The most heavily contaminated spice samples examined were observed in red chili and black pepper in order of magnitude of 1580 and 1120 cfu/g, respectively. The most predominant fungal genera encountered were Aspergillus, Penicillium, Rhizopus, Cladosporium and Trichoderma. Yeasts were also frequently recovered, but not identified. Relative occurrence values of taxa disclosed ranged between 36.4% for A. flavus and 0.6% for A. parasiticus and Absidia corymbifera. Samples obtained from gunny bags encounter higher colony counts and contamination frequency than other packing methods. The present magnitude of contamination and spectra of mycobiota approximate those reported for similar spice samples. Although several potentially mycotoxigenic fungi were isolated during the present study, neither the foodstuff nor the fungi were assayed for the presence of these toxins.     

Virus-contaminated oysters: a three-month monitoring of oysters imported to Switzerland

Molluscan shellfish are known to be carriers of viral and bacterial pathogens. The consumption of raw oysters has been repeatedly linked to outbreaks of viral gastroenteritis and hepatitis A. Switzerland imports over 300 tons of oysters per year, 95% of which originate in France. To assess the level of viral contamination, a 3-month monitoring study was conducted. Therefore, the sensitivities of several previously described methods for virus concentration were compared, and one protocol was finally chosen by using dissected digestive tissues. Eighty-seven samples consisting of five oysters each were analyzed for Norwalk-like viruses (NLVs), enteroviruses, and hepatitis A viruses from November 2001 to February 2002. The oysters were exported by 31 French, three Dutch, and two Irish suppliers. Eight oyster samples from six French suppliers were positive for NLVs, and four samples from four French suppliers were positive for enteroviruses; two of the latter samples were positive for both viral agents. No hepatitis A viruses were detected. The sequences of NLV and enterovirus amplicons showed a great variety of strains, especially for the NLVs (strains similar to Bristol, Hawaii, Mexico, and Melksham agent). The data obtained indicated that imported oysters might be a source of NLV infection in Switzerland. However, further studies are needed to determine the quantitative significance of the risk factor within the overall epidemiology of NLVs.     

Bluetongue vector species of Culicoides in Switzerland

Switzerland is historically recognized by the Office Internationale des Epizooties as free from bluetongue disease (BT) because of its latitude and climate. With bluetongue virus (BTV) moving north from the Mediterranean, an entomological survey was conducted in Switzerland in 2003 to assess the potential of the BTV vectors present. A total of 39 cattle farms located in three geographical regions, the Ticino region, the Western region and the region of the Grisons, were monitored during the vector season. Farms were located in areas at high risk of vector introduction and establishment based on the following characteristics: annual average temperature > 12.5 degrees C, average annual humidity >or= 60%, cattle farm. Onderstepoort black light traps were operated at the cattle farms generally for one night in July and one night in September. A total of 56 collections of Culicoides (Diptera: Ceratopogonidae) were identified morphologically. Only one single individual of Culicoides (Avaritia) imicola, the major Old World vector of BTV, was found in July 2003 in the Ticino region, one of the southernmost regions of Switzerland. In the absence of further specimens of C. imicola from Switzerland it is suggested that this individual may be a vagrant transported by wind from regions to the south of the country where populations of this species are known to occur. Alternative potential BTV vectors of the Culicoides (Culicoides) pulicaris and Culicoides (Avaritia) obsoletus complexes were abundant in all sampled regions with individual catches exceeding 70 000 midges per trap night.     

红火蚁对我国一些生物潜在影响的初步分析

通过分析国际上对红火蚁影响生境中其他生物的研究成果,认为红火蚁主要通过以下3种方式危害其他生物:(1)攻击、捕食刚孵化的地栖性卵生动物个体,或者以群体力量捕食昆虫幼虫、成虫等;(2)竞争有限的食物资源,导致其他物种因为缺乏足够食物供给而种群数量减少甚至灭绝;(3)通过叮咬而使得某些动物存活率降低,改变生境,甚至弃巢外逃,或者因为受攻击活动量加大而增加被捕食的几率。同时初步分析在《国家重点保护野生动物名录》中列举的379种野生动物名录中,有22种鸟类(占9.6%)、1种两栖类(占14%)、所有的18种爬行类(占100%)可能因为红火蚁的入侵导致种群数量下降甚至灭绝。     

Aspergillus salviicola,a new species from imported spice

A new species ofAspergillus, A. salviicola, has been isolated from Turkish sage, an imported spice in Japan. The species, characterized by white to rosy buff conidial heads, pinkish smooth-walled conidiophores, large biseriate aspergilla, globose smooth-walled conidia, absence of sclerotia and thermotolerant growth, is considered to represent an interface species in the subgenusCircumdati.     

红火蚁及其重要近似种的鉴别

介绍了红火蚁及其重要近似种的分类特征和分布,以及火蚁属中国已知种类,还提供了上述种类的鉴别检索表。     

Fungal diversity increases soil fungistasis and resistance to microbial invasion by a non resident species

Biodiversity decline is a major concern for ecosystem functioning. Recent research efforts have been mostly focused on terrestrial plants, while, despite their importance in both natural and artificial ecosystems, little is known about soil microbial communities. This work aims at investigating the effects of fungal species richness on soil invasion by non resident microbes. Synthetic fungal communities with a species diversity ranging from 1 to 8 were assembled in laboratory microcosms and used in three factorial experiments to assess the effect of diversity on soil fungistasis, microbial invasion of soil amended with plant litter and of plant rhizosphere. The capability of different microbes to colonize environments characterized by different resident microbial communities was measured. The number of microbial species in the microcosms positively affected soil fungistasis that was also induced more rapidly in presence of synthetic communities with more species. Moreover, the increase of resident fungal diversity dramatically reduced the invasibility of both soil and plant rhizosphere. We found lower variability of soil fungistasis and invasibility in microcosms with higher species richness of microbial communities. Our study pointed out the existence of negative relationships between fungal diversity and soil invasibility by non resident microbes. Therefore, the loss of microbial species may adversely affect ecosystem functionality under specific environmental conditions.     

Fungal endophytes of native Gossypium species in Australia

Fungal endophytes of 17 genera were found in stems of four native Gossypium species (G. australe, G. bickii, G. nelsonii, G. sturtianum) collected from inland areas in Queensland, the Northern Territory, and South Australia in 2001. Phoma, Alternaria, Fusarium, Botryosphaeria, Dichomera, and Phomopsis were common, accounting for 58, 18, 11, 3, 1, and 1 % of the 281 recovered isolates, respectively, and occurring in 47, 29, 19, 5, 5, and 4 % of the 79 sampled populations. Among the four Gossypium species in Queensland and the Northern Territory, Alternaria spp. and Fusarium spp. had the greatest recovery frequency in G. bickii stems. The recovery frequencies of Phoma spp. and Alternaria spp. were significantly greater in the G. sturtianum stems collected from South Australia than in those from Queensland and the Northern Territory. Pathogenicity of 42 representative isolates was tested on cultivated cotton (G. hirsutum). All isolates caused some localized discoloration in stem tissue when inoculation was conducted with the stem puncturing method, but none of the isolates could induce any foliar symptoms during the five-week experimental period by either inoculation method (root dipping or stem puncturing), suggesting that the endophytic fungi of native Gossypium species are unlikely sources of cotton pathogens.     

Environmental warming increases invasion potential of alpine lake communities by imported species

Global warming increasingly pressures species to show adaptive migratory responses. We hypothesized that warming increases invasion of alpine lakes by low-elevation montane zooplankton by suppressing native competitors and predators. This hypothesis was tested by conducting a two-factor experiment, consisting of a warming treatment (13 vs. 20°C) crossed with three invasion levels (alpine only, alpine+montane, montane only), in growth chambers over a 28-day period. Warming significantly reduced total consumer biomass owing to the decline of large alpine species, resulting in greater autotrophic abundance. Significant temperature-invasion interactions occurred as warming suppressed alpine zooplankton, while stimulating certain imported species. Herbivorous invaders suppressed functionally similar alpine species while larger native omnivores reduced invasion by smaller taxa. Warming did not affect total invader biomass because imported species thrived under ambient and warmed alpine conditions. Our findings suggest that the adaptability of remote alpine lake communities to global warming is limited by species dispersal from lower valleys, or possibly nearby warmer alpine ponds.     

Fungal content of ectomycorrhizal tips: comparison among 13 tree species

To better understand soil carbon cycling in forest ecosystems, we studied the proportion of fungal sheath area (FSA) in the cross-sectional ectomycorrhizal area in 13 tree species. Ectomycorrhizal samples were collected from subalpine and temperate forests in Japan. The FSA values were in the range of 12% to 56% across all tree species, tree ages, and fungal species. In Abies firma and Quercus serrata, the FSA values were larger in mature trees than in seedlings, whereas no such differences were found in Pinus densiflora and Fagus crenata. In broad-leaved trees, because the plant tissue radii lay within a narrow range, the FSA was affected mainly by the fungal sheath thickness. In conifers, however, the plant tissue radii varied widely among genera, so the FSA was affected by both the plant tissue radius and the fungal sheath thickness. Our findings suggest that the fungal content of ectomycorrhizal tips differs among tree species and fungal species, so that both parameters must be considered in studies of forest carbon cycling. The estimates revealed that data gathering in each type of forest leads to more accurate estimates of the biomass of fungi in ectomycorrhizal tips.     

Fungal endorhizal associates of Equisetum species from Western and Arctic Canada

We describe endorhizal fungi associated with Equisetum species collected from Ellesmere Island (82°N), Axel Heiberg Island (80°N), and from sites in Yukon Territory and the Prairie Provinces (51–67°N). Fungal colonization was assessed using a multiple quantitation microintersect method for lactofuchsin-stained roots examined with wide-field and confocal epifluorescence microscopy. Equisetum roots host abundant and diverse endorhizal fungal associates. For 85 specimens from 14 sites, total colonization averaged 30 ± 3%, range 0–97%. Colonization rates for wide aseptate hyphae characteristic of arbuscular mycorrhizae (5 ± 1%) was significantly less than for fine endophytes (20 ± 3%) or septate endophytes (17 ± 2%). Equisetum spp. are abundant in tundra and an important understory plant in boreal forests, where they are particularly common on burned or disturbed sites. Endorhizal fungi associated with Equisetum may have broad ecological relevance.     

Fungal communities in wheat grain show significant co-existence patterns among species

The wheat grain mycobiome is only scarcely investigated and focus has been on seed-transmitted wheat pathogens of agricultural importance. In this study, we used next generation sequencing to study the mycobiome of Danish wheat grain samples at harvest. In total 228,421 sequences were obtained from 90 samples that were taken from locations across Denmark during three years. These sequences could be grouped into 173 non-singleton operational taxonomic units (OTUs) of which 21 OTUs, identified as belonging to genera such as Fusarium, Alternaria, Cladosporium. Phaeosphaeria and Microdochium, were identified as ‘core’ OTUs as they were found in all or almost all samples and accounted for almost 99 % of all sequences. The remaining OTUs were only sporadically found and only in small amounts. Cluster and factor analyses showed patterns of co-existence among the core species. Cluster analysis grouped the 21 core OTUs into three clusters: cluster 1 consisting of saprotrophs, cluster 2 consisting mainly of yeasts and saprotrophs and cluster 3 consisting of wheat pathogens. Principal component extraction showed that the Fusarium graminearum group was inversely related to OTUs of clusters 1 and 2.     

Mycotic granulomatosis found in two species of ornamental fishes imported from Singapore

Golden gourami,Trichogaster trichopterus, and snakehead,Channa pleurophthalmus, were newly discovered to be hosts of mycotic granulomatosis caused byAphanomyces sp., the first such cases to be reported in Japan.     

Fungal diversity in ectomycorrhizal communities: sampling effort and species detection

A number of recent review articles on ectomycorrhizal (ECM) fungal community diversity have highlighted the unprecedented increase in the number of publications on this ecologically important but neglected area. The general features of these species-rich, highly dynamic and complex communities have been comprehensively covered but one aspect crucial to our assessment of diversity, namely the sampling of ECM communities has received less attention. This is a complex issue with two principal components, the physical sampling strategy employed and the life cycle traits of the ECM fungi being examined. Combined, these two components provide the image that we perceive as ECM diversity. This contribution will focus primarily on the former of these components using a recent study from a pine forest in central Sweden to highlight some sampling problems and also to discuss some features common to ECM communities. The two commonly used elements of diversity, species richness and community evenness, present rather different problems in the assessment of ECM diversity. The applicability of using current measures of abundance (number or percentage of root tips colonised) to determine community evenness is discussed in relation to our lack of knowledge on the size of individual genets of ECM fungi. The inherent structure of most ECM communities, with a few common species and a large number of rare species, severely limits our ability to accurately assess species richness. A discussion of theoretical detection limits is included that demonstrates the importance of the sampling effort (no. of samples or tips) involved in assessing species richness. Species area abundance plots are also discussed in this context. It is suggested that sampling strategy (bulk samples versus multiple collections of single tips) may have important consequences when sampling from communities where root tip densities differ. Finally, the need for studies of the spatial distribution of ECM on roots in relation to small-scale soil heterogeneity and of the temporal aspects of ECM community dynamics is raised.