Differences in HERV-K LTR insertions in orthologous loci of humans and great apes

The classification of the long terminal repeats (LTRs) of the human endogenous retrovirus HERV-K (HML-2) family was refined according to diagnostic differences between the LTR sequences. The mutation rate was estimated to be approximately equal for LTRs belonging to different families and branches of human endogenous retroviruses (HERVs). An average mutation rate value was calculated based on differences between LTRs of the same HERV and was found to be 0.13% per million years (Myr). Using this value, the ages of different LTR groups belonging to the LTR HML-2 subfamily were found to vary from 3 to 50Myr. Orthologous potential LTR-containing loci from different primate species were PCR amplified using primers corresponding to the genomic sequences flanking LTR integration sites. This allowed us to calculate the phylogenetic times of LTR integrations in primate lineages in the course of the evolution and to demonstrate that they are in good agreement with the LTR ages calculated from the mutation rates. Human-specific integrations for some very young LTRs were demonstrated. The possibility of LTRs and HERVs involvement in the evolution of primates is discussed.     

Image scoring in great apes

'Image scoring' occurs when person A monitors the giving behaviour of person B towards person C. We tested for 'image scoring' in chimpanzees, bonobos, gorillas, and orangutans. Subjects passively observed two types of incident: (i) a 'nice' person gave grapes to a human beggar, and (ii) a 'nasty' person refused to give. The subject witnessed both incidents in succession (but was unable to obtain the grapes). Shortly after, the ape had an opportunity to approach one or both human actors (nice/nasty), both of whom were now sitting side-by-side holding grapes. However, neither human offered their grapes if approached. The subject's expectation of which human was more likely to offer food was measured by comparing the proportion of time that subjects spent near each person. Chimpanzees (n=17) spent significantly more time at the 'nice' window compared to 'nasty'. Also, preference for 'nasty' declined as trials progressed. Results for other apes were not significant.     

Evolution of a HOXB6 intergenic region within the great apes and humans

Data accumulated over the past decade from several loci suggest that nonhuman primates have a greater amount of intraspecific genetic variation relative to humans. In phylogenetic reconstructions among primates that are based on genetic data, therefore, it becomes essential to adequately sample the population(s) being analyzed. Inadequate sampling may not only underestimate variation within any given population, but such an underestimate may confound any phylogenetic or population-specific conclusions implied by the data. Here we present inter- and intraspecific data on the molecular evolution of an approximately 1.0 kb intergenic HOXB6 sequence among humans, common chimpanzees, pygmy chimpanzees, gorillas and orangutans. To date, this study represents the most comprehensive investigation of a noncoding nuclear locus among the great apes and humans that examines the nature and amount of intraspecific variation in DNA sequences. Not only do these HOXB6 data continue to support earlier findings that Homo sapiens sapiens has less genetic variation than any great ape species (Ruano et al., 1992; Deinard & Kidd, 1995), but they strongly suggest that a high level of genetic polymorphism existed within the common ancestor of the African ape clade (Homo-Pan-Gorilla). Despite detecting two nucleotide substitutions linking Pan and Homo, we caution against concluding that the HOXB6 data definitively support a Homo-Pan clade to the exclusion of Gorilla. Rather, we believe that taking into consideration the level of genetic polymorphism that is likely to have existed within the common ancestor, the most prudent conclusion that can be made from all available data, including morphological, karyotypic and genetic data, may be that speciation among Homo-Pan-Gorilla is best represented by a "trichotomy".     

Mother-infant separation and reunion in the great apes

One mother-infant dyad of each species of great ape, orang-utan, chimpanzee and gorilla, with an additional conspecific cagemate, were studied for the effects of maternal separation and reunion. High levels of agitation were observed in all infants immediately upon separation, followed by a longer period of behavioral depression with continuing, intermittent agitation. A compatible cagemate seemed to attenuate, to some degree, the behavioral depression reaction. Initial detachment following reunion with the mother occurred for all the great ape infants studied. Subsequent intensification of mother-infant attachment occurred during reunion for all three species. The findings of intermittent agitation during separation and the initial detachment upon reunion with the mother are not generally reported for monkeys, but are reported for human children. These data suggest that certain responses to maternal separation and reunion occur, to some degree, among all primates that have been studied, whereas other responses seen among apes and humans are not generally reported for monkeys.     

The learning skills of great apes

Through use of a refined measurement of learning-set capacity, a comparative study of 45 great apes, six gibbons, and representative monkey groups was conducted to determine the relationship between cortical evolution and cognitive skills. The measurement employed. termed the Transfer Index, entailed criterional achievement on each of a series of two-choice visual discrimination problems, then test trials in which the initial cue values were reversed. The pre-reversal criterional mastery served as an empirical basis for matching subjects of the diverse primate groups on a performance criterion prior to the procurement of the critical measures taken on the reversal trials to assess learning and transfer-to-training capabilities. The results reveal the following: (1) general superiority of the great apes over all other primate groups tested; (2) interactions between species, pre-reversal criterional level employed, and reversal performance; and (3) support for the conclusion that learning and transfer-of-training skills are positive correlates of cortical evolution.     

Improved method for artificial insemination in the great apes

Artificial insemination in the great apes has not achieved its potential as a tool in maintenance of the endangered captive population. Three factors can influence the success rate of artificial insemination: sperm preparation, site of insemination, and timing of insemination. We have tried to optimize methods regarding these three steps. A modified method for insemination is described which has resulted in a 21% success rate (six term pregnancies from 29 inseminations) in the chimpanzee and which has successfully initiated a pregnancy in a gorilla.     

Anthrax in Western and Central African great apes

During the period of December 2004 to January 2005, Bacillus anthracis killed three wild chimpanzees (Pan troglodytes troglodytes) and one gorilla (Gorilla gorilla gorilla) in a tropical forest in Cameroon. While this is the second anthrax outbreak in wild chimpanzees, this is the first case of anthrax in gorillas ever reported. The number of great apes in Central Africa is dramatically declining and the populations are seriously threatened by diseases, mainly Ebola. Nevertheless, a considerable number of deaths cannot be attributed to Ebola virus and remained unexplained. Our results show that diseases other than Ebola may also threaten wild great apes, and indicate that the role of anthrax in great ape mortality may have been underestimated. These results suggest that risk identification, assessment, and management for the survival of the last great apes should be performed with an open mind, since various pathogens with distinct characteristics in epidemiology and pathogenicity may impact the populations. An animal mortality monitoring network covering the entire African tropical forest, with the dual aims of preventing both great ape extinction and human disease outbreaks, will create necessary baseline data for such risk assessments and management plans.     

Paleoenvironmental basis of cognitive evolution in great apes

A bias favoring tree-dominated habitats and ripe-fruit frugivory has persisted in great ape evolution since the early Miocene. This bias is indicated by fossil ape paleoenvironments, molar morphology, dental microwear, the geographic pattern of extinctions, and extant apes' reliance on wooded settings. The ephemeral aspect of high-quality fruit has placed a premium on cognitive and social means of finding and defending food sources, and appears related to great apes' affinity since the Miocene for wooded, fruit-rich environments. These habitats have, however, undergone a severe withdrawal toward the low latitudes of Africa and Southeast Asia since the late Miocene, corresponding to a decline in the diversity of great apes beginning 9.5 million years ago. Plio-Pleistocene records imply that wooded settings of Africa and SE Asia were prone to substantial fragmentation and coalescence. Once apes were confined to equatorial settings, therefore, habitat instability heightened the spatial/temporal uncertainty of ripe-fruit sources. Prolonged learning, the assignment of attributes to distant places, mental representation, and reliance on fallback foods were all favored in this dynamic environmental context. These abilities helped sustain forest frugivory in most lineages. Fluid social grouping afforded the animals opportunities to locate ephemeral foods in continuous and fragmented forests. Fission-fusion grouping also magnified the problems of object impermanence (of individuals) and dispersion manifested by food sources in the ecological realm. Thus the spatial and temporal dynamics of fruit and wooded habitats since the Miocene are reflected in important components of great ape cognition, foraging, and sociality. In contrast to great apes, cercopithecoid monkeys have increased their plant dietary options and diversified in seasonal environments since the late Miocene. Early hominins eventually severed the habitat bias that characterized the evolution of great apes, and later expanded into diverse environments.     

Regional localization of human M-BCR gene to chromosome 23 band q11 in the great apes

We hybridized a human M-BCR DNA probe to the chromosomes of chimpanzee (Pan troglodytes), gorilla (Gorilla gorilld) and orangutan (Pongo pygmaeus) by FISH-technique. The human M-BCR gene was localized to chromosome 23 band q11 (23q11), which is equivalent to the human chromosome 22 band q11 in all three species. The conservation of M-BCR gene in higher primates at the corresponding human chromosome locus provides phylogenetic clues concerning the evolution of genes.