Computer simulation study of pH-dependent regulation of electron transport in chloroplasts

A mathematical model is presented that describes the key steps of photosynthetic electron transport and transmembrane proton transfer in chloroplasts. Numerical modeling has been performed with due regard for regulatory processes at the donor and acceptor parts of photosystem (PS) I. The influence of pH-dependent activation of the Calvin cycle enzymes and energy dissipation in PS II (nonphotochemical quenching of chlorophyll fluorescence) on the light-induced redox transients of P₇₀₀, plastoquinone, and NADP as well as on the changes in intrathylakoid pH and ATP level is examined. It is demonstrated that pH-dependent regulatory processes alter the distribution of electron fluxes on the acceptor side of PS I and the total rate of electron flow between PS II and PS I. The light-induced activation of the Calvin cycle leads to significant enhancement of the electron flow from PS I to NADP⁺ and attenuation of the electron flow to molecular oxygen.     

Electron transport and transmembrane proton transfer in photosynthetic systems of oxygenic type in Silico

Using a mathematical model of light-induced stages of photosynthesis, which takes into account the key stages of pH-dependent regulation on the acceptor and donor sides of PS I, we analyzed electron and proton transport in chloroplasts of higher plants and in cyanobacterial cells. A comparison of computer simulations with experimental data showed that our model adequately described the complex nonmonotonic kinetics of the light-induced redox transients of P₇₀₀. Effects of atmospheric gases (CO₂ and O₂) on the kinetics of photooxidation of P₇₀₀ and generation of the transmembrane pH difference were studied. We also analyzed how cyclic electron transport influenced the kinetics of electron transfer, intrathylakoid pH, and ATP production. Within the framework of our model, we described the time courses of electron flow through PS II and distribution of electron fluxes on the acceptor side of PS I in chloroplasts and in cyanobacteria. It was demonstrated that contributions of cyclic electron transport and electron flow to O₂ (the Mehler reaction) were significant during the initial phase of the induction period, but diminished upon activation of the Calvin-Benson cycle.     

Electron transfer through the acceptor side of photosystem I: Interaction with exogenous acceptors and molecular oxygen

This review considers the state-of-the-art on mechanisms and alternative pathways of electron transfer in photosynthetic electron transport chains of chloroplasts and cyanobacteria. The mechanisms of electron transport control between photosystems (PS) I and II and the Calvin–Benson cycle are considered. The redistribution of electron fluxes between the noncyclic, cyclic, and pseudocyclic pathways plays an important role in the regulation of photosynthesis. Mathematical modeling of light-induced electron transport processes is considered. Particular attention is given to the electron transfer reactions on the acceptor side of PS I and to interactions of PS I with exogenous acceptors, including molecular oxygen. A kinetic model of PS I and its interaction with exogenous electron acceptors has been developed. This model is based on experimental kinetics of charge recombination in isolated PS I. Kinetic and thermodynamic parameters of the electron transfer reactions in PS I are scrutinized. The free energies of electron transfer between quinone acceptors A_1A/A_1B in the symmetric redox cofactor branches of PS I and iron–sulfur clusters F_X, F_A, and F_B have been estimated. The second-order rate constants of electron transfer from PS I to external acceptors have been determined. The data suggest that byproduct formation of superoxide radical in PS I due to the reduction of molecular oxygen in the A1 site (Mehler reaction) can exceed 0.3% of the total electron flux in PS I.     

Coupled cyclic electron transport in intact chloroplasts and leaves of C3 plants: Does it exist? if so,what is its function?

Transthylakoid proton transport based on Photosystem I-dependent cyclic electron transport has been demonstrated in isolated intact spinach chloroplasts already at very low photon flux densities when the acceptor side of Photosystem I (PS I) was largely closed. It was under strict redox control. In spinach leaves, high intensity flashes given every 50 s on top of far-red, but not on top of red background light decreased the activity of Photosystem II (PS II) in the absence of appreciable linear electron transport even when excitation of PS II by the background light was extremely weak. Downregulation of PS II was a consequence of cyclic electron transport as shown by differences in the redox state of P700 in the absence and the presence of CO₂ which drained electrons from the cyclic pathway eliminating control of PS II. In the presence of CO₂, cyclic electron transport comes into play only at higher photon flux densities. At H⁺/e=3 in linear electron transport, it does not appear to contribute much ATP for carbon reduction in C3 plants. Rather, its function is to control the activity of PS II. Control is necessary to prevent excessive reduction of the electron transport chain. This helps to protect the photosynthetic apparatus of leaves against photoinactivation under light stress.     

Modeling of the photosynthetic electron transport regulation in cyanobacteria

In this work we have performed a computer analysis of electron and proton transport in cyanobacterial cells using a mathematical model of light-dependent stages of photosynthesis taking into account the key stages of pH-dependent regulation of electron transport on both acceptor and donor sides of photosystem 1 (PS1). Comparison of theoretical and experimental data shows that the model adequately describes the multiphase kinetics of photoinduced redox transformations of P₇₀₀ (the primary electron donor in PS1). Our computer simulation describes the effect of variations of atmospheric gases (CO₂ and O₂) on the induction events in cyanobacteria (P₇₀₀ photooxidation, generation of transmembrane ΔpH), which strongly depends on the preillumination conditions (aerobic or anaerobic atmosphere). It has been shown that the variations of CO₂ concentration in the cell interior may noticeably affect the kinetics of electron transport, acidification of lumen, and ATP synthesis. The contributions of alternative pathways of electron transport (cyclic electron transport around PS1 and electron outflow to O₂) to the function of cyanobacterial photosynthetic apparatus have been analyzed. At the initial stage of induction period, cyclic electron flows around PS1 (“short” and “long” pathways) substantially contribute to photosynthetic electron transport. These flows, however, attenuate with the light-induced activation of the Calvin-Benson cycle reactions. In the meantime, the outflow of electrons from PS1 to O₂ (or to other metabolic chains) increases with oxygen accumulation in the medium. The effects of ferredoxin oxidation by hydrogenase catalyzing the H₂ formation on the kinetics of P700 photooxidation and distribution of electron flows on the acceptor side of PS1 have been modeled.     

Energetic and regulatory role of proton potential in chloroplasts

The review focuses on the energetic and regulatory role of proton potential in the activity of chloroplasts, the light energy-converting organelles of plant cells. Mechanisms of generation of the transmembrane difference of electrochemical potentials of hydrogen ions in the chloroplast thylakoid membranes are considered. Methods for measuring the intrathylakoid pH in chloroplasts are described. It is shown that under conditions of phosphorylation in chloroplasts, the pH of the intrathylakoid space decreases moderately (pH_in ⩾ 6.0–6.2, at the stroma pH_out ∼ 7.8–8.0), with a corresponding concentration component of equal to ΔpH ⩽ 1.6–2.0. On analyzing the energy and structural features of ATP synthase of chloroplasts, we conclude that the energy stored as the concentration component of the proton potential ΔpH is sufficient to sustain ATP synthesis. The mechanisms of pH-dependent regulation of electron transport in chloroplasts (photosynthetic control of electron transport, enhancement of non-photochemical quenching of chlorophyll excitation in the light-harvesting antenna, light-induced activation of the Calvin-Benson cycle reactions, activation of ATP synthase) are considered briefly.     

Rates of vectorial proton transport supported by cyclic electron flow during oxygen reduction by illuminated intact chloroplasts

The light-dependent quenching of 9-aminoacridine fluorescence was used to monitor the state of the transthylakoid proton gradient in illuminated intact chloroplasts in the presence or absence of external electron acceptors. The absence of appreciable light-dependent fluorescence quenching under anaerobic conditions indicated inhibition of coupled electron transport in the absence of external electron acceptors. Oxygen relieved this inhibition. However, when DCMU inhibited excessive reduction of the plastoquinone pool in the absence of oxygen, coupled cyclic electron transport supported the formation of a transthylakoid proton gradient even under anaerobiosis. This proton gradient collapsed in the presence of oxygen. Under aerobic conditions, and when KCN inhibited ribulose bisphosphate carboxylase and ascorbate peroxidase, fluorescence quenching indicated the formation of a transthylakoid proton gradient which was larger with oxygen in the Mehler reaction as electron acceptor than with methylviologen at similar rates of linear electron transport. Apparently, cyclic electron transport occured simultaneously with linear electron transport, when oxygen was available as electron acceptor, but not when methylviologen accepted electrons from Photosystem I. The ratio of cyclic to linear electron transport could be increased by low concentrations of DCMU. This shows that even under aerobic conditions cyclic electron transport is limited in isolated intact chloroplasts by excessive reduction of electron carriers. In fact, P₇₀₀ in the reaction center of Photosystem I remained reduced in illuminated isolated chloroplasts under conditions which resulted in extensive oxidation of P₇₀₀ in leaves. This shows that regulation of Photosystem II activity is less effective in isolated chloroplasts than in leaves. Assuming that a Q-cycle supports a H⁺/e ratio of 3 during slow linear electron transport, vectorial proton transport coupled to Photosystem I-dependent cyclic electron flow could be calculated. The highest calculated rate of Photosystem I-dependent proton transport, which was not yet light-saturated, was 330 mol protons (mg chlorophyll h)^–1 in intact chloroplasts. If H⁺/e is not three but two proton transfer is not 330 but 220 mol (mg Chl H)^–1. Differences in the regulation of cyclic electron transport in isolated chloroplasts and in leaves are discussed.     

Photoacoustic Measurements of Cyclic Electron Flow around Photosystem I in Leaves Adapted to Light-States 1 and 2

The photoacoustic technique was used to study in vivo cyclicelectron flow through PS I in intact plant leaves irradiatedwith far-red light. Appreciable PS I-cyclic ATP formation wasshown to occur in both C-3 and C-4 plants. It was also observedthat various environmental/experimental conditions leading toa significant inhibition of the linear photosynthetic electrontransport were associated with a stimulation of PS I-cyclicenergy storage. In contrast, in vivo adaptation of leaves tolight-states 1 and 2 did not induce any photoacoustically measurablechanges in the capacity of PS I for cyclic electron transfer.Consequently, the presented data do not support the recent hypothesisthat the main function of light-induced state transitions isto regulate the balance between linear (PS I+PS II) and cyclic(PS I) electron transport in the chloroplasts. (Received February 24, 1992; Accepted May 15, 1992)     

Interaction of Amaranthin with the Electron Transport Chain of Chloroplasts

The electron paramagnetic resonance method was used to study the interactions of amaranthin with isolated class B chloroplasts from broad bean (Vicia faba L.) and amaranth (Amaranthus tricolor L.) during the light-driven electron and proton transport. Amaranthin was shown to interact with electron transport chain of chloroplasts at the PS II level; it also affects the electron transport near PS I. At the same time, amaranthin had no significant inhibitory effect on the light-dependent formation of the transmembrane pH gradient.     

Functional and topological aspects of pH-dependent regulation of electron and proton transport in chloroplasts in silico

In this work, we summarize results of computer simulation of electron and proton transport processes coupled to ATP synthesis in chloroplasts performed within the frames of a mathematical model developed as a system of differential equations for concentrations of electron carriers and hydrogen ion inside and outside the granal and stromal thylakoids. The model takes into account topological peculiarities and lateral heterogeneity of the chloroplast lamellar system. This allowed us to analyze the influence of restricted diffusion of protons inside small compartments of a chloroplast (e.g., in the narrow inter-thylakoid gap) on electron transport processes. The model adequately describes two modes of pH-dependent feedback control of electron transport associated with: (i) the acidification of the thylakoid lumen, which causes the slowing down of plastoquinol oxidation and stimulates an increase in dissipation of excess energy in PS2, and (ii) the alkalization of stroma, inducing the activation of the BBC (Bassham-Benson-Calvin) cycle and intensified consumption of ATP and NADPH. The influence of ATP on electron transport is mediated by modulation of the thylakoid membrane conductivity to protons through the ATP synthase complexes. We also analyze the contribution of alternative electron transport pathways to the maintenance of optimal balance between the energy donating and energy consuming stages of the light-induced photosynthetic processes.     

Electron acceptors in isolated intact spinach chloroplasts act hierarchically to prevent over-reduction and competition for electrons

Electron fluxes in isolated intact spinach chloroplasts were analyzed under saturating light and under optimal CO₂ and P_i supply. When CO₂ assimilation was the only ATP- and NADPH-consuming reaction, the ΔpH decreased and the chloroplasts showed clear evidence of over-reduction. This suggested that additional electron flow is required in order to maintain the ΔpH and the stromal NADPH/ATP ratio. The additional electron flow may be cyclic electron transport around Photosystem I and linear electron transport towards either oxaloacetate or O₂. The contributions of, and the interrelationships between, these three electron transfer pathways were analyzed by following the reactions of chloroplasts in their presence or absence, and by monitoring to what extent they were able to compensate for each other. Inhibition of cyclic electron flow by antimycin A caused strong over-reduction and decreased the ΔpH. Only oxaloacetate, but not O₂, was able to restore photosynthesis. In the presence of H₂O₂, there was a rapid build-up of a high ΔpH, and the reduction of any other electron acceptor was prevented. It is concluded that the different electron acceptors in the stroma are organized in a hierarchical manner; this allows electron flux towards CO₂ and nitrite reduction to proceed without any competition for electrons, and any excess electrons to be taken by these additional non-assimilatory pathways. Hence, the ΔpH is maintained at the required level and over-reduction of the electron transport chain and the stromal redox components is avoided. This revised version was published online in June 2006 with corrections to the Cover Date.     

Energy charge,phosphorylation potential and proton motive force in chloroplasts

Adenylate concentrations were measured in intact chloroplasts under a variety of conditions. Energy charge was significant in the dark and increased in the light, but remained far below values expected from observed phosphorylation potentials in broken chloroplasts, which were 80 000 M^?1 or more in the light. With nitrite as electron acceptor, phosphorylation potentials in intact chloroplasts were about 80 M^?1 in the dark and only 300 M^?1 in the light. Similar phosphorylation potentials were observed, when oxaloacetate, phosphoglycerate or bicarbonate were used as substrates. ΔG′_ATP was ?42 kJ/mol in darkened intact chloroplasts, ?46 kJ/mol in illuminated intact chloroplasts and ?60 kJ/mol in illuminated broken chloroplasts. Uncoupling by NH₄Cl, which stimulated electron transport to nitrite or oxaloacetate and decreased the proton gradient, failed to decrease the phosphorylation potential of intact chloroplasts. Also, it did not increase the quantum requirement of CO₂ reduction. It is concluded that the proton motive force as conventionally measured and phosphorylation potentials are far from equilibrium in intact chloroplasts. The insensitivity of CO₂ reduction and of the phosphorylation potential to a decrease in the proton motive force suggests that intact chloroplasts are over-energized even under low intensity illumination. However, such a conclusion is at variance with available data on the magnitude of the proton motive force.     

Effects of heterocyclic and tertiary permeant amines on the electron transfer in thylakoid membranes

The effect of low concentrations (up to 50 μM) of lipophilic permeant amines on the electron transfer in thylakoid membranes of pea chloroplasts has been investigated. In the presence of heterocyclic amines (9-aminoacridine and neutral red), the electron transfer, initiated from H₂O to PS I acceptors, has been shown to be inhibited to a level amounting to less than 50% of control, this taking place for both the basal (at alkaline pH) and the gramicidin-uncoupled transport (at pH 6.5–8.5). Under the same conditions, tertiary amines (dibucaine, tetracaine) cause only a 10–15% inhibition of transport. With all the amines, the rate of electron transport from H₂O to DCBQ, PS II acceptor is decreased to 80–90% of control at pH above 8.0, but this effect is completely removed when pH is lowered to 7.7–6.5. In the region of PS I, all the amines accelerate the basal transport, but do not influence the uncoupled electron transfer. A conclusion has been drawn that, parallel with uncoupling, heterocyclic and tertiary amines also cause an inhibition of PS II, appearing at alkaline pH values. Additionally, heterocyclic amines seem to brake electron flow at the level of plastoquinone reduction. This revised version was published online in June 2006 with corrections to the Cover Date.     

The involvement of stromal ATP in maintaining the pH gradient across the chloroplast envelope in the light

The possible involvement of ATP in maintaining the pH gradient across the chloroplast envelope membrane was investigated by simultaneously measuring the stromal ATP concentration and the pH of the stroma and intrathylakoid spaces in intact isolated chloroplasts. Addition of exogenous ATP in the dark increased stromal pH by 0.3–0.4 pH units and increased the pH gradient across the thylakoid membrane by a similar amount. In the dark, dihydroxyacetone phosphate plus oxaloacetate increased stromal ATP to levels equal to those obtained in illuminated chloroplasts, but stromal pH was only increased by 0.1–0.3 pH units compared to an increase of 0.8–1.0 units in the light. The energy-transfer inhibitor, phlorizin, decreased stromal ATP in illuminated chloroplasts almost to dark levels, but did not decrease stromal pH. Inorganic pyrophosphate and an analog of ATP were used to exchange endogenous adenine nucleotides out of chloroplasts, and this also decreased the stromal ATP to dark levels without decreasing stromal pH in the light. Addition of 15–20 μM 3-(3′,4′-dichlorophenyl)-1,1-dimethylurea (DCMU) reduced both the stromal pH and ATP content of illuminated chloroplasts to dark levels but lower concentrations of DCMU preferentially decreased stromal pH. It is concluded that the pH gradient across the chloroplast envelope is unlikely to be maintained by an electrogenic proton pump driven by ATP hydrolysis. Photosynthetic electron transport is required to maintain the pH gradients across both the chloroplast thylakoid and chloroplast envelope membranes.     

The Coupling of Electron Flow to ATP Synthesis in Pea and Maize Mesophyll Chloroplasts : I. INTERACTION OF ADENINE NUCLEOTIDES AND ENERGY TRANSFER INHIBITORS WITH THE COUPLING FACTOR COMPLEX

The rate of nonphosphorylating electron transport (in the absence of ADP and inorganic phosphate) in well-coupled (ATP/2e⁻ = 0.9-1.1) maize mesophyll chloroplasts is not modulated by external pH (6.5-8.5), low levels of ADP or ATP, or energy transfer inhibitors, e.g. triphenyltin and Hg²⁺ ions. In contrast nonphosphorylating electron flow in pea chloroplasts is sensitive to alterations in medium pH, and to the presence of adenine nucleotides and energy transfer inhibitors in the assay medium. Although ATP is without effect on the rate of basal electron transport in maize chloroplasts, steady-state proton uptake is stimulated 3- to 5-fold by low levels of ATP. These results suggest that differences may exist in the manner in which the coupling factor complex controls proton efflux from the intrathylakoid space in C₃ and C₄ mesophyll chloroplasts.     

Effects of Diffusion and Topological Factors on the Efficiency of Energy Coupling in Chloroplasts with Heterogeneous Partitioning of Protein Complexes in Thylakoids of Grana and Stroma. A Mathematical Model

In this work, we studied theoretically the effects of diffusion restrictions and topological factors that could influence the efficiency of energy coupling in the heterogeneous lamellar system of higher plant chloroplasts. Our computations are based on a mathematical model for electron and proton transport in chloroplasts coupled to ATP synthesis in chloroplasts that takes into account the nonuniform distribution of electron transport and ATP synthase complexes in the thylakoids of grana and stroma. Numerical experiments allowed the lateral profiles of pH in the thylakoid lumen and in the narrow gap between grana thylakoids to be simulated under different metabolic conditions (in the state of photosynthetic control and under conditions of photophosphorylation). This model also provided an opportunity to simulate the effects of steric constraints (the extent of appression of thylakoids in grana) on the rates of non-cyclic electron transport and ATP synthesis. This model demonstrated that there might be two mechanisms of regulation of electron and proton transport in chloroplasts: 1) slowing down of non-cyclic electron transport due to a decrease in the intra-thylakoid pH, and 2) retardation of plastoquinone reduction due to slow diffusion of protons inside the narrow gap between the thylakoids of grana. Numerical experiments for model systems that differ with respect to the arrangement of thylakoids in grana allowed the effects of osmolarity on the photophosphorylation rate in chloroplasts to be explained.     

Structural and functional stability of isolated intact chloroplasts

The effect of in vitro ageing on the ultrastructure, electron transport, thermoluminescence and flash-induced 515 nm absorbance change of isolated intact (type A) chloroplasts compared with non-intact (types B and C) chloroplasts was studied.When stored in the dark for 18 h at 5°C, the structural characteristics of intact and non-intact chloroplasts were only slightly altered. The most conspicuous difference between the two was in the coupling of the electron transport which was tighter and more stable in intact chloroplasts. Under dark-storage the activity of PS 2* decreased and the -20°C peak of thermoluminescence increased at the expense of the emission at +25°C. These changes were less pronounced in the intact chloroplasts. PS 1 activity and the flash-induced 515 nm absorbance change were not affected by dark-storage.When kept in the light (80 W m^-2 (400–700 nm) for 1 h at 5°C), the thylakoid system of chloroplasts rapidly became disorganized. Although the initial activity of electron transport was much higher in intact chloroplasts, after a short period of light-storage the linear electron transport and the electron transport around PS 2 decreased in both types of preparations to the same low level. These changes were accompanied by an overall decrease of the intensity of thermoluminescence. PS 1 was not inhibited by light-storage, while the flash-induced 515 nm absorbance change was virtually abolished both in preparations of intact and non-intact chloroplasts.The data show that in stored chloroplast preparations intactness cannot be estimated reliably either by the FeCy test or by inspection under the electron microscope. These tests should be cross-checked on the level and coupling of the electron transport.