Characterization of seven polymorphic microsatellite loci in the Baja California endemic black‐tailed brush lizard Urosaurus nigricaudus

Seven microsatellite loci were developed for the Baja California endemic black‐tailed brush lizard Urosaurus nigricaudus, using an enriched genomic DNA library. All loci were polymorphic and overall presented high levels of variation. Number of alleles ranged from five to 16 (average 12.14), and observed heterozygosities from 0.535 to 0.923 (average 0.752). Cross‐species amplification was successful and polymorphism was detected for all the loci using the congeners Urosaurus lahtelai and Urosaurus ornatus. These markers will be useful to study fragmented populations of U. nigricaudus on agricultural landscape of the Baja California Peninsula.     

Revision of Chaetodipus arenarius (Rodentia: Heteromyidae)

Chaetodipus arenarius is an endemic species of the Baja California Peninsula. It has undergone taxonomic changes in the last few years. Today, two species, C. arenarius and Chaetodipus dalquesti, are formally recognized with an unknown range for each. However, genetic analysis showed the possible presence of a third species. The objectives of this study were to use molecular data (cytochrome b and cytochrome c oxidase subunit III genes) to determine how many genetic groups are present in C. arenarius in the Baja California Peninsula; if these groups have morphological characteristics that could be used to distinguish them; if the genetic groups have limited distributions; identify taxonomic implications; and establish if there are any associations amongst genetic groups and different habitats. Bayesian inference, maximum parsimony, maximum likelihood, distance optimality criteria, and minimum spanning network indicated three monophyletic groups with high genetic differences (5.54–13.59%). These groups are morphologically diagnosable based on pelage and morphometric characters and geographical range. The three genetic groups correspond to three taxa previously described as subspecies or species. Based on our results, these should be considered to be different species: C. arenarius occupies the most extreme habitats with hot summers; C. dalquesti occupies the moistest coastal areas in the southern part of the peninsula, and Chaetodipus siccus is restricted by mountain ranges to the isolated Los Planes Basin and Cerralvo Island. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010.     

Heavy Metal Accumulation in Four Species of Sea Turtles from the Baja California Peninsula, Mexico

Heavy metals were assessed in four species of sea turtles from the Baja California Peninsula, Mexico, representing the first report of heavy metal concentrations in tissues of post-yearling sea turtles from the Eastern Pacific. Concentrations of Cd measured in C. mydas kidney (653 μg/g dry wt) were the highest ever reported for any sea turtle species. Cd accumulated preferentially in kidney and the ratios of kidney to liver Cd in Baja California turtles were among the highest reported for sea turtles globally. Zn, Ni, and Mn concentrations were also significantly higher in kidney than other tissues, while Cu and Fe were greatest in liver, and all metals were lowest in muscle. With the exception of one value (69.9 μg/g in kidney of C. caretta), Pb was low in all tissues from Baja California. In comparisons across species, kidney of C. mydas had greater Zn and Ni concentrations as compared to other species, although there was no difference in liver metal levels among the species. Positive correlations were detected in the concentrations of Cd, Cu and Ni with the straight carapace length of C. caretta.     

Trophic interaction between striped marlin and swordfish using different timescales in waters around Baja California Sur,Mexico

Isotopic niche and resource partitioning were examined between striped marlin (Kajikia audax) and swordfish (Xiphias gladius) using stable isotope ratios from spine bone and muscle samples. The δ¹³C (¹³C/¹²C) and δ¹⁵N (¹⁵N/¹⁴N) values were measured in annual growth bands from fin spines and muscle collected from striped marlin and swordfish off Baja California Sur to evaluate the trophic interaction between these two species, the relative contribution of the main prey and the isotopic niche within two different timescales. Mean trophic level (TL) values were different when tissues were compared with the highest value found in muscle samples from K. audax. When TL was analysed in all growth bands for both species, no changes were detected throughout time, suggesting only minor differences in feeding habits between these species. We determined that Dosidicus gigas, Sthenoteuthis oualaniensis, and Ancistrocheirus lesueurii were the most important prey for both species, but the relative contribution of each of them to the diet differed. There is likely no trophic overlap between K. audax and X. gladius off Baja California Sur, as K. audax occupied a larger isotopic niche with more diverse prey than X. gladius.     

MARIPELTA ATLANTICA SP. NOV. (RHODOPHYTA,RHODYMENIALES) A NEW DEEP-WATER ALGA FROM FLORIDA1

A red alga with a cylindrical stipe bearing a single deciduous blade was collected in deep water off the east coast of Florida. It is described as Maripelta atlantica sp. nov., differing from M. rotata (Dawson) Dawson (the type of the genus, from deep water off California and Baja California) chiefly by having an annular tetrasporangial nemathecium on the lower surface of the blade rather than scattered nemathecia on the upper surface. Both species are vegetatively and reproductively distinct from M. thivyae Dawson, which is transferred to Halichrysis. New information is given regarding the reproduction and distribution of M. rotata.     

Biogeography and endemism of ants (Hymenoptera: Formicidae) in Baja California, Mexico: afirst overview

Abstract Aims Ants (Hymenoptera: Formicidae) of the Baja California peninsula are poorly known, with information based largely on scattered museum and literature records. We provide the first comprehensive account of ant species occurring on the peninsula, we examine distribution patterns, and we assess the ‘peninsular effect’ which predicts that species richness declines from the base to the tip of a peninsula. Location Peninsula of Baja California, Mexico. Methods Data collection involved examining, identifying and recording label data from c. 2350 series of ants. These records provide a provisional, if incomplete, species list. We applied the incidence‐based estimator, Chao‐2, to our data base of specimen records to estimate the total number of ant species on the peninsula. We assessed endemism by comparing our peninsular species list to those from adjacent states. The peninsular effect was tested by comparing genus and species level richness between the two states of Baja California, and across five latitudinal blocks. Results We document 170 native ant species in thirty‐three genera, plus six non‐native species, in Baja California. It seems likely that additional species remain to be discovered: the Chao‐2 estimator of species richness, at 206.0 species, is about 20% higher than our observed species richness. About 30% of the species and 20% of the genera are restricted within Baja California to the relatively mesic California Floristic Province of north‐western Baja California. Nearly all of these species also occur in California. Forty‐seven species (27.6%) are peninsula endemics. Using our entire data set, the peninsular effect appears to be strong, with about twice as many species in the northern state of Baja California than are recorded from the southern state of Baja California Sur; the ratio of genera is 33 to 24. However, this effect becomes weak at the species level and absent at the genus level when minimizing habitat effects by omitting species restricted to the California Floristic Province. At a finer scale, across latitudinal blocks of about 1.9°, the number of species declines towards central portions of the peninsula and then increases in the Cape Region. Nine ant species display strongly disjunct distributions, and these occur in two general patterns: peninsula disjuncts and peninsula–mainland disjuncts. Main conclusions The Baja California peninsula supports a diverse and distinctive ant fauna, with the proportion of endemic species similar to that displayed by plants. Patterns of species and genus richness across the five latitudinal blocks provide poor support for the peninsular effect. Moreover, habitat diversity, especially that related to topographic relief, appears to be the most important factor affecting the gradient of ant species richness in Baja California. Additional collections are needed to develop a more complete species list and to determine the boundaries and status of many species. Nevertheless, the present data base provides a useful starting point for understanding the evolution of ant assemblages in Baja California and for comparison with peninsular patterns in other taxa.     

Offshore cephalopods (Mollusca: Cephalopoda) collected off the west coast of Mexico during the TALUD cruises

Deep-sea cephalopods are still poorly studied worldwide. In the case of the Mexican Pacific there is a general lack of basic information concerning their distribution and biology. A series of 132 specimens of pelagic and benthic deep-water cephalopods was obtained during the TALUD project. Samples were mostly obtained with benthic sampling gear that operated as mid-water trawls during the ascent of the nets. Micronekton and Isaacs-Kidd samplers were also occasionally used. The specimens (77 lots in total) were obtained at localities off western Mexico at depths between 122 m and 2200 m and belong to 31 species. Considering material identified to species level only, a total of 13 species were found only at a single station, while five others occurred in 5–6 stations (i.e., Leachia dislocata, Abraliopsis [Pfefferiteuthis] falco, Pterygioteuthis giardi, P. holeyi and Benthoctopus robustus). The most widespread species was Japetella diaphana, collected in 11 stations. Twenty-two of the 31 species are strictly pelagic, eight strictly benthic and one is benthopelagic. Significant new distribution records were obtained for seven species: Doryteuthis opalescens, Gonatus berryi, Todarodes pacificus, Opistoteuthis californiana, Benthoctopus leioderma, B. robustus and Graneledone boreopacifica.     

GEOGRAPHICAL CORRELATION OF MORPHOLOGICAL VARIATION IN SILVETIA COMPRESSA (FUCACEAE,FUCALES, PHAEOPHYCEAE)

Silvetia compressa ( J. Agardh) Serrão et al. is a common member of the upper intertidal fucoid community on the Pacific coast of America from Humboldt County, California, to Punta Baja, Baja California, Mexico. A relatively narrow range of morphological variability is exhibited by most mainland populations, regardless of latitude, but some mainland populations and all insular populations participate in a complex pattern that we have attempted to analyze. A few populations on the Monterey Peninsula in which the fronds are atypically delicate were described by Setchell & Gardner as f. gracilis, to which was assigned a population from Santa Catalina Island. After comparing populations from various parts of the range of the species, including all of the Channel Islands, we conclude that two subspecies may be recognized. In subsp. compressa, which includes f. gracilis as a growth form and occurs chiefly on the mainland, the frond is robust with long tapered receptacles. In the variant subspecies, which is chiefly insular but also occurs on the coast of northern Baja California, the typical frond has slender axes as in f. gracilis, but is more densely branched and has short ellipsoidal receptacles. Comparison of nucleotide sequences from the ITS regions of rDNA revealed an identical pattern for subsp. compressa from Baja California and central California, including populations assignable to f. gracilis. By contrast, the pattern for the variant subspecies differed by 2 bp (0.3%) from that of subsp. compressa.     

Characterization of 10 microsatellite loci in the spiny‐tailed iguana Ctenosaura hemilopha

Ten microsatellite loci were developed for the Baja California spiny‐tailed iguana Ctenosaura hemilopha, using an enriched genomic DNA library. In the Cerralvo Island population, seven loci were polymorphic and presented moderate levels of variation. Number of alleles ranged from two to eight (average 4.43), and observed heterozygosity from 0.150 to 0.857 (average 0.492). Polymorphism was detected at six loci on C. hemilopha individuals from the southern Baja California Peninsula. These markers will be useful to study familiar relationships and behaviour on the Cerralvo Island population.     

Phylogeny of the New World diploid cottons (Gossypium L., Malvaceae) based on sequences of three low-copy nuclear genes

American diploid cottons (Gossypium L., subgenus Houzingenia Fryxell) form a monophyletic group of 13 species distributed mainly in western Mexico, extending into Arizona, Baja California, and with one disjunct species each in the Galapagos Islands and Peru. Prior phylogenetic analyses based on an alcohol dehydrogenase gene (AdhA) and nuclear ribosomal DNA indicated the need for additional data from other molecular markers to resolve phylogenetic relationships within this subgenus. Toward this end, we sequenced three nuclear genes, the anonymous locus A1341, an alcohol dehydrogenase gene (AdhC), and a cellulose synthase gene (CesA1b). Independent and combined analyses resolved clades that are congruent with current taxonomy and previous phylogenies. Our analyses diagnose at least two long distance dispersal events from the Mexican mainland to Baja California, following a rapid radiation of the primary lineages early in the diversification of the subgenus. Molecular data support the proposed recognition of a new species closely related to Gossypium laxum that was recently collected in Mexico.     

THE EFFECT OF SEAWEED DIETS ON GROWTH OF GREEN ABALONE,HALIOTIS FULGENS,FROM BAJA CALIFORNIA,MEXICO

Two abalone species: green Haliotis fulgens and yellow Halioti corrugata represent nearly 97% of the total production in the Mexican abalone fishery. It has been assumed that abalone feed on the kelp algae Macrocystis pyrifera. Regional hatcheries use this species as a main source of natural food. M. pyrifera does not occur at the southern limit of the distribution of abalone species along the Baja California Peninsula. In this study, growth rates of juveniles H. fulgens, 17.3 ± 2.2 mm shell length and 0.4 ± 0.2 g body weight, were evaluated. Juveniles were fed with common species in the benthic environments inhabited by abalone along the western coast of Baja California during 191 days. Three diets were based on algae: palm kelp, Eisenia arborea, giant kelp, M. pyrifera and Gelidium robustum, and one on seagrass, Phyllospadix torreyi. Shell length and body growth rates varied between 21.5 μm day^?1 and 2.2 mg day^?1 for E. arborea and between 45.9 μm day^?1 and 6.7 mg day^?1 for M. pyrifera. Higher specific growth rates (SGR) in length and weight were determined for M. pyrifera: 0.2% and 0.7% day^?1. Significant differences between values of juveniles fed M. pyrifera with the rest of the diets were found. The highest mortality (21%) was in juveniles fed the red algae G. robustum.     

Eriogonum (Polygonaceae) novelties from Baja California,Mexico

Five new entities ofEriogonum are described from Baja California and Baja California Sur, Mexico, including one species,E. preclarum, and four varieties of other species:E. fasciculatum var.emphereium,E. wrightii var.oresbium,E. elongatum var.areorivum, andE. grande var.testudinum. Three combinations are proposed:E. wrightii var.dentatum,E. elongatum var.vollmeri, andE. repens.     

Morphology of Pyrodinium bahamense Plate (Dinoflagellata) near Isla San José, Gulf of California, Mexico

The morphology of Pyrodinium bahamense south of Isla San José in the Gulf of California, Mexico was described using light and scanning electron microscopy. Morphological and dimensional examination of whole cells and thecal patterns were conducted to discriminate between P. bahamense var. compressum and P. bahamense var. bahamense. Microscopic examinations confirmed that specimens of P. bahamense from Isla San José are closely related to P. bahamense var. bahamense. The main average dimensions were: cells 41.9 μm long, 43.8 μm wide, 55.6 μm amplitude, apical horn 7.2 μm long, and the left antapical spine 19.5 μm long. The highest cell concentration was 240 cells l⁻¹ and occurred with a bloom of Pseudo-nitzschia spp. The presence of this dinoflagellate off the east coast of the Baja California Peninsula had not been previously reported. Recently, P. bahamense from Florida tested positive for saxitoxins. Paralytic shellfish poisoning from this species has occurred in Mexican waters. Here, significant aspects of taxonomy, toxicology, life cycle, and ecology are discussed.     

Association between cacti and nurse perennials in a heterogeneous tropical dry forest in northwestern Mexico

Abstract. The Sierra de La Laguna, Baja California Sur harbors the only tropical dry forest of the Peninsula. An inventory of the perennial plants was carried out at the eastern part of this mountain range. Plant spatial distribution was analyzed considering the species composition and vertical stratification of plant clusters in a study plot of 2 500 m². A plant cluster was defined as a group of at least three individuals with a maximum distance between plants of 1 m. Soil physical-chemical characteristics and soil surface temperatures were compared between shade and sun conditions. The tropical dry forest of Baja California Sur presents a highly aggregated pattern of species distribution. Most of the perennial plants grow clumped, yet not all of the six cactus species recorded were significantly associated with them. Pattern analysis revealed that only Stenocereus thurberii and Ferocactus peninsulae were aggregated and associated to perennial plants. There is no replacement pattern between cacti and perennial plants. Nutrient content, including soil fertility, between shade and sun conditions does not seem to explain the patchy distribution of perennial plants, while the differences in solar radiation between these conditions appear to be restrictive and determinant of this spatial pattern of distribution.     

Two new Marina (Leguminosae) from the southern Baja California peninsula, Mexico

Marina victoriae andM. brevis are newly described species from the southern Baja California peninsula, Mexico. The former is a perennial herb locally abundant in the eroded hillsides at the foothills of Sierra de la Victoria, where an oak woodland and a dry tropical forest meet. The latter is an elusive ephemeral inhabiting a narrow strip of land between the mangroves and the desert scrub on an island in the Gulf of California. These two new species belong to the seriesChrysorrhizae, a group native to the Gulf of California basin.     

Molecular genetic analysis of two native desert palm genera,Washingtonia and Brahea,from the Baja California Peninsula and Guadalupe Island

The complex geological and ecological processes that have generated high levels of biodiversity and endemism in the Baja California Peninsula have been the subject of intensive study. However, relatively little is known about phylogeography of the iconic endemic palm species of this region. We therefore analyzed a total of 2,294 bp of chloroplast and 738 bp of nuclear sequence data in 169 samples of five native palm species from Baja California, Sonora and Guadalupe Island. We found that Washingtonia and Brahea palms had low levels of genetic diversity and were highly structured, with the majority of species and major geographic regions being characterized by distinct haplotypes. We also found strong support for currently recognized species in Washingtonia, but our results were less clear cut for Brahea due to haplotype sharing. Furthermore, patterns of population structure were broadly consistent with historical vicariant events such as the inundation of the Isthmus of La Paz, the formation of the Sea of Cortez, and the more recent colonization and isolation of Guadalupe Island's palms. Our findings contribute toward a growing appreciation of the complexity of plant responses to past geological changes and also provide valuable baseline genetic data on relict American palm species.     

Mycorrhizal characterization of the boojum tree, <Emphasis Type="Italic">Fouquieria columnaris</Emphasis>, an endemic ancient tree from the Baja California Peninsula,Mexico

The mycorrhizal association with the boojum tree, Fouquieria columnaris (=Idria columnaris), was studied. This unusual tree is almost exclusively endemic to granite and volcanic soils in highly arid areas of the Baja California Peninsula of Mexico. Soil and root samples from ten sites, covering the extent of geographic distribution of the tree on the peninsula, were analyzed. The roots of the boojum tree contained all structures of an arbuscular mycorrhizal (AM) association. Morphologically different species, 23 in number, were identified in close vicinity to the boojum tree indicating that F. columnaris is associated with a high number of AM species of several AM genera and families.     

Characterization of nine microsatellite loci on endemic kangaroo rats Dipodomys simulans peninsularis from southern Baja California Peninsula

Nine polymorphic microsatellite loci were isolated to investigate the effects of habitat fragmentation on gene flow and genetic variation of the peninsular kangaroo rat Dipodomys simulans peninsularis on agricultural landscape from the Baja California Peninsula. The markers had an average of 9.11 alleles per locus (range 2–14), with mean observed and expected heterozygosities 0.646 (range 0.333–0.900) and 0.788 (range 0.284–0.932), respectively. No evidence of linkage disequilibrium was found across pairs of loci, and only one locus exhibited evidence of null alleles.     

Endemic regions of the vascular flora of the peninsula of Baja California,Mexico

Question: Can we recognize areas of high endemism and high endemic richness, using data from collections, and what are the ecological variables that best explain these areas? Location: Peninsula of Baja California, Mexico. Methods: We analysed the distribution of 723 endemic vascular plants species along the peninsula of Baja California and neighbouring islands distributed in 218 cartographic cells 15’ x 20’ in size. By means of a residual analysis, we identified areas of significantly high endemic species richness, and we calculated the degree of endemicity (or rarity) in each cell by giving to each species a weight factor inversely proportional to the land area it covers. Results: Nine regions of high‐endemicity and/or high endemic species richness were found. Discussion and conclusions: The analyses of rarity and endemic species richness showed two contrasting scenarios: High endemicity values in oceanic and sky islands accounts for a high number of species with a restricted distribution, promoted most likely by genetic isolation and high environmental heterogeneity. High endemic richness along the peninsular coast is related to ecotonal transition along vegetation types. After correcting for collection effort (i.e. the number of specimens collected within a cell), we found the phytogeographic region and altitudinal heterogeneity to be the variables that best predicted endemic richness. Both high endemism and high endemic richness have distinct geographic patterns within our study region. The nine endemic regions provide elements for priority definitions in future conservation programs.