烟曲霉几丁质酶基因的克隆与表达

Chi4 4是烟曲霉 (Aspergillusfumigatus)YJ-407产生的一种胞外几丁质酶。通过用真菌几丁质酶保守氨基酸序列与Chi44的N-端序列检索烟曲霉部分基因组序列数据库 ,获得一个编号为contig555的烟曲霉基因组序列 ,可能包含烟曲霉几丁质酶的基因。根据检索结果用RT-PCR方法从烟曲霉YJ-407中克隆到1.4kb的cDNA片段 ,该cDNA的ORF编码一个395个氨基酸的蛋白 ,分子量为43.6kD。对其推导氨基酸序列分析表明该蛋白与其它真菌来源的几丁质酶同源 ,而且活性中心与人巨噬细胞几丁质酶高度同源。该cDNA已在E .coli与PichiapastorisGS115中获得表达 ,分别获得 43kD和44kD的重组蛋白 ,两种重组蛋白均有几丁质酶活性。与野生酶相比 ,大肠杆菌表达的43kD重组酶及Pichia酵母表达的44kD重组酶稳定性下降 ,说明Chi44的糖基化修饰可稳定酶蛋白.     

利用宏基因组法筛选新几丁质酶基因

为了寻找新型几丁质酶编码基因,提取了汕头湾海域海底表层沉积物中微生物的宏基因组,采用PCR-DGGE技术扩增和分离获得了新型几丁质酶基因编码信息。实验共得到63条几丁质酶基因片段,其编码的蛋白序列与NCBI数据库收录的序列相似率在41%~97%之间,且大多数在70%以下,只有8条相似率在70%以上,NCBI数据库中与其相似性最高的几丁质酶蛋白序列有18个种属,其中与橙色滑柱菌株(Herpetosiphon aurantiacus)ATCC 23779的几丁质酶存在着最高相似性的序列有27条,另外,与未可培养细菌几丁质酶基因片段相似的有22条,占34.9%,分属9个种属。说明汕头湾表层沉积物中存在多种几丁质酶编码基因,其中有很多是尚未研究的,为寻找新型的几丁质酶编码基因提供了有力的生物资源。     

一株拮抗香蕉枯萎病的内生细菌的分离及其几丁质酶基因信号肽的分泌活性分析

目的：旨在分离并选择一株香蕉内生细菌作为内生基因工程生防菌,并克隆其几丁质酶基因的信号肽序列。方法：从香蕉植株杆下部分离并选择了一株拮抗香蕉枯萎病且具有分泌几丁质酶能力的内生细菌,对该菌株进行了形态观察、生理生化测定和16S rDNA序列分析,克隆了其几丁质酶基因的编码序列并预测了其信号肽,构建了含有信号肽和不含信号肽的几丁质酶的表达菌株BL-chi1和BL-chi2。结果：结合形态观察、生理生化特征和16S rDNA序列比对分析确定该菌株为Klebsiella属,将该菌株命名为KKWB 5;BL-chi1和BL-chi2经IPTG诱导后,均表达了与预期蛋白大小一致的蛋白,同时BL-chi1诱导后的培养基上清中出现一条约45kDa的条带,而BL-chi2和空载体的BL-pET22b诱导后的培养基上清中均无此条带;几丁质水解试验发现,BL-chi1诱导后的培养基上清中的蛋白经浓缩和纯化后都能在几丁质平板上形成透明水解圈。结论：该几丁质酶的信号肽能被BL21（DE3）所识别,将几丁质酶分泌到培养基中,并且分泌的几丁质酶具有水解几丁质的生物学活性。内生菌KKWB-5的分离及其几丁质酶分泌信号肽序列的克隆为进一步构建内生工程菌来防治香蕉枯萎病打下了基础。     

鲤鱼金属硫蛋白基因启动区功能的研究

以氯霉素乙酰化酶作为报讯基因、利用草鱼肾培养细胞瞬时表达系统,对已克隆的鲤鱼金属硫蛋白基因５’－调节区１．６ｋｂ的序列进行了功能分析。从顺式效应和反式效应研究证明：所克隆的鲤鱼ＭＴ基因５‘－调节区具有典型ＭＴ启动子的特性实验发现哺乳动物病毒ＳＶ４０增强子要以加强鱼类ＭＴ启动子的活性,提示在系统进化上鱼类基因不但存在增强子元件,并具有哺乳动物增强子相似的作用方式,而且作用于增强子的反式效应因子也存在     

地衣芽孢杆菌MY75菌株几丁质酶基因的异源表达及特性

【目的】地衣芽孢杆菌MY75菌株的几丁质酶基因的异源表达,并对表达蛋白的特性进行研究。【方法】制备MY75菌株培养上清粗蛋白,利用酶谱分析确定具有几丁质酶活的蛋白分子量。将该蛋白进行飞行时间质谱分析,确定其部分氨基酸序列,设计PCR引物对MY75菌株的几丁质酶基因进行克隆及异源表达。对表达蛋白的最适反应温度及pH,温度耐受性及金属离子对酶活力的影响等特性进行了研究,并测定了表达蛋白对真菌孢子萌发的抑制活性和对甜菜夜蛾幼虫的杀虫增效作用。【结果】酶谱分析证明MY75菌株培养上清液中仅含有一种55kDa的几丁质酶。将该编码基因chiMY克隆及序列分析后发现,基因长度为1797bp,编码599个氨基酸。在大肠杆菌中异源表达的几丁质酶ChiMY蛋白的分子量为67kDa。质谱分析证明,55kDa蛋白与67kDa蛋白序列相同。ChiMY最适pH和最适温度分别为7.0和50°C,为中性几丁质酶。Li+,Na+,和Mg2+离子对表达蛋白的酶活力具有促进作用,Mn2+,Cr3+,Zn2+和Ag+离子则能显著抑制酶活力,Cu2+和Fe3+离子完全抑制酶活性。生物测定的结果显示,异源表达的MY75几丁质酶能够抑制小麦赤霉及黑曲霉的孢子萌发,并且对苏云金芽孢杆菌的杀虫活力具有增效作用。【结论】地衣芽孢杆菌MY75菌株中仅有一种55kDa几丁质酶,其编码基因能够在大肠杆菌中大量表达,表达蛋白分子量与野生型蛋白之间有显著差异,由此证明MY75菌株中存在着几丁质酶的剪切加工过程。明确了地衣芽孢杆菌几丁质酶ChiMY具有抑制真菌活性及杀虫增效作用。上述全部研究结论在国内首次报道。     

豇豆几丁质酶N端序列测定及与其它植物的比较

通过自动 Edman降解程序 ,测定了经诱导、纯化的豇豆几丁质酶 N端 1 0个氨基酸的序列 ,并将该序列与其它植物几丁质酶 N端相应部分的氨基酸序列进行了比较分析。结果表明 ,该豇豆 ( Vigna sesquipedalis)几丁质酶 N端 1 0个氨基酸的序列为 EQCGSQAGGA,与 类几丁质酶同一部分同感序列同源性高达 1 0 0 % ;而与 、 及 类几丁质酶的相应序列均无同源性。结合考虑此酶的等电点 ( 8.3)及分子量 ( 33k D) ,可推测该豇豆几丁质酶属于 类几丁质酶。其 N端序列的高度保守性提示 ,该段序列可作为 类几丁质酶的一段主要特征序列 ,并可据其合成核酸探针 ,以分离、克隆其它 类几丁质酶编码基因。     

棉铃虫单核衣壳核多角体病毒几丁质酶基因的克隆与表达

根据棉铃虫单核衣壳核多角体病毒(HaSNPV)几丁质酶基因的序列,设计引物,引入适当的酶切位点,利用PCR扩增出不含N末端信号肽以及C末端内质网定位肽的几丁质酶基因片段.将该基因片断克隆至原核表达载体pProEXHTb,经IPTG诱导,在大肠杆菌DH5α中获得了高效表达,表达产物的大小为60kD,含量占菌体总蛋白量的40%.利用来源于AcMNPV 几丁质酶的抗体对表达蛋白进行检测,获得特异性的显色信号,证实所获原核表达产物与杆状病毒的几丁质酶具有同源性.     

烟夜蛾几丁质酶基因的克隆与表达

运用RT-PCR技术扩增编码烟夜蛾Helicoverpaassulta(Guen啨e)幼虫几丁质酶基因的cDNA片段,将其克隆至pMD18-T载体,获得该基因的成熟蛋白阅读框序列。将该基因重组到表达型质粒pGEX-4T-2中,并转化入原核细胞中表达,序列测定结果表明,烟夜蛾幼虫几丁质酶基因的成熟蛋白阅读框全长1338bp,编码445个氨基酸残基,预测分子量和等电点分别为50.1kDa和9.26;推导的氨基酸序列与其近缘种棉铃虫几丁质酶氨基酸序列的一致性达99%,与其他6种昆虫几丁质酶的氨基酸序列也高度一致(65%~76%),并具有几丁质酶的典型特征。将该基因克隆到原核表达载体pGEX-4T-2上并转化BL21,SDS-PAGE和Western印迹分析表明,经IPTG诱导,76kDa附近没有特异蛋白条带出现,表明烟夜蛾几丁质酶基因不能在原核表达载体pGEX-4T-2中表达。     

川西云杉几丁质酶基因PlCHI的克隆、表达与生物信息学分析

以川西云杉（Picea likiangensis var.balfouriana（Rehd.et Wils.）Hillier ex Slsvin）为材料,利用RT-PCR技术,克隆获得几丁质酶基因PlCHI的cDNA全长序列,并对该基因的序列特征及基因表达情况进行分析。结果显示,PlCHI的开放阅读框长1017 bp,共编码338个氨基酸;蛋白序列结构域分析结果表明,PlCHI为ClassⅠ类几丁质酶,属19家族,兼具溶菌酶活性;该序列与其他植物几丁质酶的蛋白序列相似性较高。系统发育分析结果显示,川西云杉PlCHI序列与北美云杉（Picea sitchensis（Bong.）Corr.）、黑松（Pinus thunbergii Parl.）等松科植物亲缘关系最近。进一步将PlCHI重组质粒转入大肠杆菌BL21（DE3）中,表达出约45 kD的蛋白,主要以包涵体形式存在,且在25℃下采用0.2 mmol/L的IPTG诱导4 h时蛋白的表达量最佳。     

粉棒束孢几丁质酶基因cDNA全序列克隆及结构特征分析

通过设计基因保守区的特异性简并引物,运用SMARTRACERT-PCR技术,首次从粉棒束孢中克隆出完整的几丁质酶基因。该基因cDNA全长1549bp,5'端非翻译区89bp,3'端非翻译区有188bp,开放阅读框(ORF)1272bp,编码423个氨基酸。信号肽长度为22个氨基酸。信号肽很可能需要两次剪切。成熟的蛋白理论分子量为43.9kDa,理论等电点为5.67。氨基酸序列具有几丁质酶18族的两个高度保守的活性区域,一个是酶作用活性位点,另一个是几丁质结合区域。该蛋白可归于几丁质酶18族V类。成熟蛋白的氨基酸序列与裂虫壳AAV98691、白色扁丝霉CAA45468、菌生轮枝孢AAP45631、莱氏野村菌AAP04616和球孢白僵菌AAN41261的同源性分别为91%,89%,80%,76%和75%。     

Molecular cloning and functional characterization of mouse chitotriosidase

Mammalian chitinase and chitinase-like proteins are members of a recently discovered gene family. Thus far, neither chitin nor chitin synthase has been found in mammals. The existence of chitinase genes in mammals is intriguing and the physiologic functions of chitinases are not clear. Human chitotriosidase, also called chitinase 1 (chit1), has been cloned. It has been found that high levels of serum chitotriosidase are associated with several diseases, but the physiologic functions of this enzyme are still unclear. To facilitate the studies in animal models we cloned and characterized a cDNA that encodes the mouse chitotriosidase. The open reading frame of this cDNA predicts a protein of 464 amino acids with a typical chitinase structure, including a signal peptide, a highly conserved catalytic domain and a chitin-binding domain. The predicted amino acid sequence is highly homologous to that of human chitotriosidase and to that of mouse acidic mammalian chitinase. Sequence analysis indicates that the mouse chitotriosidase gene has 12 exons, spanning a 40-kb region in mouse chromosome 1. The constitutive expression of mouse chitotriosidase is restricted to brain, skin, bone marrow, kidney, tongue, stomach and testis. Recombinant expression of the cloned cDNA demonstrated that the encoded protein is secreted and has chitinolytic activity that is sensitive to the specific chitinase inhibitor allosamidin and has the ability to bind to chitin particles. Substitution mutations at the conserved catalytic site completely abolished the enzymatic activity of the recombinant protein. These studies illustrate that mouse chitotriosidase is a typical chitinase that belongs to the mammalian chitinase gene family.     

Chitinase-like proteins are candidate biomarkers for sepsis-induced acute kidney injury

Sepsis-induced acute kidney injury (AKI) is a frequent complication of critically ill patients and leads to high mortality rates. The specificity of currently available urinary biomarkers for AKI in the context of sepsis is questioned. This study aimed to discover urinary biomarkers for septic AKI by contemporary shotgun proteomics in a mouse model for sepsis and to validate these in individual urine samples of mice and human septic patients with and without AKI. At 48 h after uterine ligation and inoculation of Escherichia coli, aged mice (48 weeks) became septic. A subgroup developed AKI, defined by serum creatinine, blood urea nitrogen, and renal histology. Separate pools of urine from septic mice with and without AKI mice were collected during 12 h before and between 36-48 h after infection, and their proteome compositions were quantitatively compared. Candidate biomarkers were validated by Western blot analysis of urine, plasma, and renal tissue homogenates from individual mice, and a limited number of urine samples from human septic patients with and without AKI. Urinary neutrophil gelatinase-associated lipocalin, thioredoxin, gelsolin, chitinase 3-like protein 1 and -3 (CHI3L3) and acidic mammalian chitinase were the most distinctive candidate biomarkers selected for septic AKI. Both neutrophil gelatinase-associated lipocalin and thioredoxin were detected in urine of septic mice and increased with severity of AKI. Acidic mammalian chitinase was only present in urine of septic mice with AKI. Both urinary chitinase 3-like protein 1 and -3 were only detected in septic mice with severe AKI. The human homologue chitinase 3-like protein 1 was found to be more excreted in urine from septic patients with AKI than without. In summary, urinary chitinase 3-like protein 1 and -3 and acidic mammalian chitinase discriminated sepsis from sepsis-induced AKI in mice. Further studies of human chitinase proteins are likely to lead to additional insights in septic AKI.     

一株Sanguibacter sp.C4产几丁质酶基因的克隆与表达

Chi58是Sanguibacter sp．strain C4产生的一种胞外几丁质酶。通过chiA的特异性PCR引物探测到菌株C4中存在几丁质酶,并将扩增到的几丁质酶基因片段（chiA-F）克隆、测序后,提交GenBank数据库进行同源性搜索。对从GenBank中获得的高同源性序列进行比对,并根据保守区域设计2对PCR引物进行嵌套PCR,扩增出Chi58基因的开放阅读框（ORF）。测序结果表明该酶的ORF由1692个核苷酸组成,编码563个氨基酸,在N端有23个氨基酸的信号肽,其成熟蛋白的分子量应为58．544kDa。对其推导氨基酸的序列分析表明Chi58与沙雷氏菌的几丁质酶（如徂）有高度同源性（88．9％-99．6％）,其结构主要包括信号肽序列、PKD结构域和18家族糖苷水解酶结构域。将该基因克隆到pET32a（＋）载体构建重组质粒pChi58,转入大肠杆菌BL-21（DE3）进行融合表达。经IPTG诱导后,可见分子量约81．1kDa的融合蛋白的表达。     

The sialate-pyruvate lyase from pig kidney. Elucidation of the primary structure and expression of recombinant enzyme activity.

The first complete primary structure of a mammalian sialate-pyruvate lyase, namely of the enzyme from porcine kidney, was elucidated by a combination of different PCR techniques followed by sequencing of the resulting fragments. The primers used were either deduced from four porcine lyase peptides or from an alignment of human and mouse expressed sequence tags (ESTs), which were found to be homologous to already known microbial lyase sequences, and cDNA alone or after ligation with a plasmid vector served as a template. The lyase primary structure consists of 319 amino acids with a calculated protein molecular mass of approximately 35 kDa, which fits well to the value determined for the native enzyme. The porcine lyase sequence made it possible to assemble several ESTs from mouse and man in order to obtain the complete putative lyase genes. The three mammalian sequences reveal a high degree of homology both on the nucleotide (83% of the nucleotides are identical between all three sequences) and on the amino-acid level (72% of the amino acids are identical between all three sequences), and thus form a tightly related group. In contrast, the identity between the lyase primary structures from pig kidney and the microbial enzyme from Clostridium perfringens is much less pronounced (25%). Thirty-one amino acids were found to be absolutely conserved in all lyase sequences. Among them are two amino acids (lysine 173 and tyrosine 143 in the porcine lyase) that are most important for the catalytic reaction. After expression cloning, recombinant enzyme activity was expressed in Escherichia coli BL21(DE3)pLysS, which confirms the identity of the cloned sequence and verifies one of the putative human and murine sequences. After SDS/PAGE of a cell extract of the expression clone, a band of 35kDa was stained on the gel.     

Characterization of the human adenylyl cyclase gene family: cDNA,gene structure,and tissue distribution of the nine isoforms

The membrane-bound adenylyl cyclases (ACs) represent one of the major families of effector enzymes for G protein-coupled receptors. Eight human AC isoforms, encoded by separate genes, have been identified up to now. However, in several cases only partial cDNA sequences are available (ADCY1,2,5). A ninth expected isoform, the human ortholog of rat ADCY4, has not been described yet. Using the high inter-species homology of mammalian AC isoforms, we searched the human genome and we succeeded to identify full-length coding sequences for all enzymes. Where required, missing sequence information was provided experimentally. Analysis of genomic sequences from the Celera database also allowed us to determine the exon-intron boundaries for ADCY1-9 and to establish the gene structures. We found that human AC genes comprise 11 to 26 exons, which are distributed over 16 to 430kb. We further report expression profiles for the nine ACs in a panel of 16 human tissues and in human embryonic kidney (HEK) cells.     

Structure and expression of a newt cardio-skeletal myosin gene. Implications for the C value paradox

As part of our studies on the fate of the muscle lineage during amphibian limb regeneration, we have isolated genomic and cDNA sequences from a myosin heavy chain in the newt (Notophthalmus viridescens). Notwithstanding the technical problems inherent in analysing the large newt genome, genomic and cDNA sequences have been isolated and subjected to analysis by restriction mapping. Northern hybridization, Southern hybridization and DNA sequencing. We believe these to be the first single copy newt gene sequences to have been subjected to this type of analysis. The newt gene sequences showed a striking difference from mammalian myosins in both the estimated sizes of the gene and its intervening sequences; these being much larger than in the mammalian models, it is speculated that this could contribute to the exceptional size of the newt genome. By contrast, the coding sequences displayed very high levels of sequence homology to mammalian myosins. In particular, the amino acid sequence of the newt myosin was found to have greatest homology with rat and human myosin isotypes having a similar cardio-skeletal muscle expression pattern. Despite a long evolutionary separation, newt and mammalian cardio-skeletal myosins have remained more similar to each other than have the human or rat cardiac forms to skeletal myosins within their own respective species.