The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry

Soil transplant into warmer regions has been shown to alter soil microbiology. In contrast, little is known about the effects of soil transplant into colder regions, albeit that climate cooling has solicited attention in recent years. To address this question, we transplanted bare fallow soil over large transects from southern China (subtropical climate zone) to central (warm temperate climate zone) and northern China (cold temperate climate zone). After an adaptation period of 4 years, soil nitrogen components, microbial biomass and community structures were altered. However, the effects of soil transplant on microbial communities were dampened by maize cropping, unveiling a negative interaction between cropping and transplant. Further statistical analyses with Canonical correspondence analysis and Mantel tests unveiled annual average temperature, relative humidity, aboveground biomass, soil pH and NH₄⁺‐N content as environmental attributes closely correlated with microbial functional structures. In addition, average abundances of amoA‐AOA (ammonia‐oxidizing archaea) and amoA‐AOB (ammonia‐oxidizing bacteria) genes were significantly (P < 0.05) correlated with soil nitrification capacity, hence both AOA and AOB contributed to the soil functional process of nitrification. These results suggested that the soil nitrogen cycle was intimately linked with microbial community structure, and both were subjected to disturbance by soil transplant to colder regions and plant cropping.     

The divalent cation requirement of Dead Sea halobacteria

Pleomorphic Halobacterium strains isolated from the Dead Sea (H. volcanii, H. marismortui) require high concentrations of divalent cations (75 mM Mg²⁺) for growth. When suspended in medium containing less than 50 mM Mg²⁺ cells lose their native shape within minutes and become spherical. This occurs even at elevated sodium chloride concentrations. Concomitant with the morphological changes, a high mlecular weight component which is positive in Coomassie Brilliant Blue and in periodate Schiff stain is released into the surrounding medium. At divalent cation concentrations lower than 100 mM magnesium cells were shown to lose their viability and their ability to incorporate amino acids. The potency of different divalent cations or their combinations to enable growth and stabilize morphology and viability was studied. It is suggested that different mechanisms underlie the divalent cation requirement of the different functions.     

Occurrence of virus-like particles in the Dead Sea

Electron-microscopic examination of water samples from the hypersaline Dead Sea showed the presence of high numbers of virus-like particles. Between 0.9 and 7.3 × 10⁷ virus-like particles ml⁻¹ were enumerated in October 1994 in the upper 20 m of the water column during the decline of a bloom of halophilic Archaea. Virus-like particles outnumbered bacteria by a factor of 0.9–9.5 (average 4.4). A variety of viral morphologies were detected, the most often encountered being spindle-shaped, followed by polyhedral and tailed phages. In addition, other types of particles were frequently found, such as unidentified algal scales, and virus-sized star-shaped particles. Water samples collected during 1995 contained low numbers of both bacteria and virus-like particles (1.9–2.6 × 10⁶ and 0.8–4.6 × 10⁷ ml⁻¹ in April 1995), with viral numbers sharply declining afterwards (less than 10⁴ ml⁻¹ in November 1995–January 1996). It is suggested that viruses may play a major role in the decline of halophilic archaeal communities in the Dead Sea, an environment in which protozoa and other predators are absent. Received: February 5, 1997 / Accepted: May 24, 1997     

Aquatic entomofauna of a Dead Sea oasis

A survey of the aquatic and semi-aquatic insect fauna of a semi-tropical, arid zone oasis on the western Dead Sea coast, was conducted primarily in the summer and winter seasons of 1980/81. A table is given of the aquatic entomofauna, including their zoogeographical affinities, Israeli distribution and presence in En Gedi and in each of the two canyons there. Zoogeographical analysis reveals a predominance of tropical and arid African affinity (Ethiopian = 31%, Saharo-Arabian = 19%), with a major affinity also to the Mediterranean (21%). The entomofaunal community was divided among seven ecological biotopes: fast or slow flowing streams and pools; eddies; bedrock or deep pools; standing or stagnant pools. A community analysis table of the occurrence of the major faunal elements in each of seven biotopes is presented. Some rather stenotopic taxa were indicative of biotopes. A comparison is made of summer and winter seasonality including the effects of flash floods and the relation of these phenomena to emigration/imigration and life cycles of the entomofauna. The effects of agriculture and tourism are discussed and proposals made for conservation of the biotope communities. These biotopes and their entomofaunal communities are presumed to represent most of the habitats of Middle East arid zone springs.     

Density of Monoporeia affinis and biogeochemistry in Baltic Sea sediments

This study focused on effects from Monoporeia affinis reworking and ventilation activities on benthic fluxes and mineralization processes during a simulated bloom event. The importance of M. affinis density for benthic solute (O₂, ΣNO₂⁻ + NO₃⁻, NH₄⁺ and HPO₄²⁻) fluxes and sediment reactivity (mobilization of NH₄⁺ and HPO₄²⁻) following additions of organic material to the sediment surface was experimentally investigated using sediment-water and closed sediment (jar) incubations. Three different densities of M. affinis were used to resemble a low, medium and high density situation (1300, 2500 and 6400 ind. m^− 2, respectively) of a natural amphipod community. The degradation of phytodetritus (Tetraselmis sp., 5 g C m^− 2) added to the sediment surface was followed over a period of 20 days. Benthic solute fluxes of O₂, ΣNO₂⁻ + NO₃⁻ and NH₄⁺ were generally progressively stimulated with increasing number of M. affinis, while no such correlation was found for HPO₄²⁻. Solute fluxes were initially enhanced 1 to 2 days after the addition of phytodetritius, caused by mineralization of the most labile organic material and a food-stimulated irrigation by the amphipods. There was no effect from the activity of M. affinis on total denitrification (Dtot = Dn + Dw) or denitrification utilizing nitrate from coupled nitrification/denitrification (Dn) for any of the densities examined. Denitrification utilizing overlying water nitrate (Dw) was only about 10% of Dtot. Dw was significantly enhanced for the highest M. affinis density investigated. The reactivity of the sediment decreased progressively with increasing density of M. affinis and with time of the experiment. However, enhanced ammonium production at least 6 days after the organic addition indicated excretion of N-containing organic compounds by M. affinis. In conclusion, large spatial and temporal variations in density of M. affinis may be of significant importance for benthic solute fluxes and overall mineralization of organic material in Baltic Sea sediments.     

Bacteriorhodopsin in a bloom of halobacteria in the Dead Sea

A dense bloom of red halobacteria developed in the Dead Sea in the summer 1980, bacterial densities of up to 1.9 x10⁷ cells ml^-1 were observed. The population consisted of two types: pleomorphic, cup-shaped cells and rod-shaped cells. A high content of bacteriorhodopsin was found in the bloom (up to 0.4 nmol per mg protein). The rod-shaped Halobacterium was isolated and was shown to contain bacteriorhodopsin.Abbreviations 20 specific gravity at 20°C - Tris Tris-(hydroxymethyl)-aminomethane     

Heavy metals in the Dead Sea and their coprecipitation with halite

After a prolongued period of stratification (about 300 years) the Dead Sea overturned in 1979 and again in 1982. Its waters became saturated with respect to halite and the massive precipitation of halite which occurred in winter 1982/83 has been monitored. We followed the fate of the heavy metals during this period of physical and chemical changes.The concentrations of Zn, Cd, Pb and Cu in the Dead Sea waters have been measured by anodic stripping voltammetry (ASV) which provided sensitive measurement of these elements after a minimal pretreatment of the samples (dilution 1: 1 and acidification). In the meromictic lake (prior to 1979), the concentrations of all four elements were larger in the deep anoxic layers. With the onset of halite precipitation a decline in their concentrations was observed. Most dramatic was the decrease in Cd, which practically disappeared from the water column in 1985. The coprecipitation of heavy metals with halite — collected by sediment traps in 1983 — was examined, as well as that of older halite recovered from a sediment core. Although concentrations of heavy metals were somewhat larger in recent halite, all halite samples had the same coprecipitation pattern: the concentration of Pb was the largest, followed by Cd, and that of Cu was the smallest. The apparent distribution coefficient was larger for Cd than for Pb.We estimated the amount of Cd which may have accompanied the deposition of halite during 1983–1985; it is compatible with its observed disappearance from the water column in 1985. The amounts of Pb and of Zn which are missing from the Dead Sea of 1985 are much larger than can be accounted for by coprecipitation with halite. A possible explanation is that the formation of halite crystals may have enhanced settling of particulates which in turn, may have scavenged Pb and Zn from the Dead Sea waters. Cu seems to be much less affected by the physical and chemical events which occurred in the Dead Sea during 1976–1985.     

Dynamics of a bloom of halophilic archaea in the Dead Sea

After a period of more than ten years in which bacterial and algal community sizes were extremely small, a dense bloom of halophilic archaea developed in the upper 5–10 m of the Dead Sea water column in the summer of 1992. The development of this bloom followed a dilution of the upper water layer by winter rainfloods, which enabled the development of a short-lived dense bloom of the unicellular green alga Dunaliella parva. The dense archaeal community (up to 3.5 × 10⁷ cells m1^–1 in June 1992) imparted a red coloration to the Dead Sea, due to its high content of bacterioruberin. Bacteriorhodopsin was not detected. High levels of potential heterotrophic activity were associated with the bloom, as measured by the incorporation of labeled organic substrates. After the decline of the algal bloom, archaeal numbers in the lake decreased only little, and most of the community was still present at the end of 1993. The amount of carotenoid pigment per cell, however, decreased 2–3-fold between June 1992 and August 1993. No new algal and archaeal blooms developed after the winter floods of 1992–1993, in spite of the fact that salinity values in the surface layer were sufficiently low to support a new algal bloom. A remnant of the 1992 Dunaliella bloom maintained itself at the lower end of the pycnocline at depths between 7 and 13 m (September 1992–August 1993). Its photosynthetic activity was small, and very little stimulation of archaeal growth and activity was associated with this algal community.     

Nutrients in pore waters from Dead Sea sediments

Pore waters were separated from 50 cm-long cores of Dead Sea sediments raised from waters depths of 25, 30 and 318 m. The salinity of the pore water is close to that of the overlying water at 225–230 g l^–1 chloride. The titration alkalinity of the pore water is about 60 % of the overlying water, and sulfate is also depleted. Ammonia and phosphate concentrations are higher than those of the water column with up to 50 mg l^–1 N-NH₃ (ten times increase) and 350 µg l^–1 P-PO _inf4 ^sup3– (four to eight times increase). Early diagenetic reactions are a result of decomposition of organic matter and of water-sediment interactions, resulting in aragonite precipitation, phosphate removal to the sediments, probably by absorption on iron-oxyhydroxides followed by remobilization, reduction of sulfate and formation of iron sulfides and accumulation of ammonia. Mass balance calculations show that pore water contribute about 80% of the ammonia and 30% of the phosphate input into the Dead Sea water column. On the other hand, the sediments act as a sink for carbonate and sulfate.     

Subsurface microbiology and biogeochemistry of a deep, cold-water carbonate mound from the Porcupine Seabight (IODP Expedition 307)

The Porcupine Seabight Challenger Mound is the first carbonate mound to be drilled (∼270 m) and analyzed in detail microbiologically and biogeochemically. Two mound sites and a non-mound Reference site were analyzed with a range of molecular techniques [catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH), quantitative PCR (16S rRNA and functional genes, dsrA and mcrA ), and 16S rRNA gene PCR-DGGE] to assess prokaryotic diversity, and this was compared with the distribution of total and culturable cell counts, radiotracer activity measurements and geochemistry. There was a significant and active prokaryotic community both within and beneath the carbonate mound. Although total cell numbers at certain depths were lower than the global average for other subseafloor sediments and prokaryotic activities were relatively low (iron and sulfate reduction, acetate oxidation, methanogenesis) they were significantly enhanced compared with the Reference site. In addition, there was some stimulation of prokaryotic activity in the deepest sediments (Miocene, > 10 Ma) including potential for anaerobic oxidation of methane activity below the mound base. Both Bacteria and Archaea were present, with neither dominant, and these were related to sequences commonly found in other subseafloor sediments. With an estimate of some 1600 mounds in the Porcupine Basin alone, carbonate mounds may represent a significant prokaryotic subseafloor habitat.     

Survival of Filamentous Fungi in Hypersaline Dead Sea Water

A variety of filamentous fungi have recently been isolated from the Dead Sea (340 g/L total dissolved salts). To assess the extent to which such fungi can survive for prolonged periods in Dead Sea water, we examined the survival of both spores and mycelia in undiluted Dead Sea water and in Dead Sea water diluted to different degrees with distilled water. Mycelia of Aspergillus versicolor and Chaetomium globosum strains isolated from the Dead Sea remained viable for up to 8 weeks in undiluted Dead Sea water. Four Dead Sea isolates (A. versicolor, Eurotium herbariorum, Gymnascella marismortui, and C. globosum) retained their viability in Dead Sea water diluted to 80% during the 12 weeks of the experiment. Mycelia of all species survived for the full term of the experiment in Dead Sea water diluted to 50% and 10% of its original salinity. Comparison of the survival of Dead Sea species and closely related isolates obtained from other locations showed prolonged viability of the strains obtained from the Dead Sea. Spores of isolates obtained from the terrestrial shore of the Dead Sea generally proved less tolerant to suspension in undiluted Dead Sea water than spores of species isolated from the water column. Spores of the species isolated from the control sites had lost their viability in undiluted Dead Sea water within 12 weeks. However, with the exception of Emericella spores, which showed poor survival, a substantial fraction of the spores of Dead Sea fungal isolates remained viable for that period. The difference in survival rate between spores and mycelia of isolates of the same species points to the existence of adapted halotolerant and/or halophilic fungi in the Dead Sea.     

Microbial and chemical characterization of underwater fresh water springs in the Dead Sea

Due to its extreme salinity and high Mg concentration the Dead Sea is characterized by a very low density of cells most of which are Archaea. We discovered several underwater fresh to brackish water springs in the Dead Sea harboring dense microbial communities. We provide the first characterization of these communities, discuss their possible origin, hydrochemical environment, energetic resources and the putative biogeochemical pathways they are mediating. Pyrosequencing of the 16S rRNA gene and community fingerprinting methods showed that the spring community originates from the Dead Sea sediments and not from the aquifer. Furthermore, it suggested that there is a dense Archaeal community in the shoreline pore water of the lake. Sequences of bacterial sulfate reducers, nitrifiers iron oxidizers and iron reducers were identified as well. Analysis of white and green biofilms suggested that sulfide oxidation through chemolitotrophy and phototrophy is highly significant. Hyperspectral analysis showed a tight association between abundant green sulfur bacteria and cyanobacteria in the green biofilms. Together, our findings show that the Dead Sea floor harbors diverse microbial communities, part of which is not known from other hypersaline environments. Analysis of the water's chemistry shows evidence of microbial activity along the path and suggests that the springs supply nitrogen, phosphorus and organic matter to the microbial communities in the Dead Sea. The underwater springs are a newly recognized water source for the Dead Sea. Their input of microorganisms and nutrients needs to be considered in the assessment of possible impact of dilution events of the lake surface waters, such as those that will occur in the future due to the intended establishment of the Red Sea-Dead Sea water conduit.     

Assessment of Some Heavy Metals in the Dead Sea Mud and Treatment Optimization

This paper describes the experimental remediation of the Dead Sea mud and the quantitative determination of some heavy metals. Herein, two chelating agents were employed as extracting aqueous solution: ethylenediaminetetraacetic acid (EDTA) and citric acid. The study focused on the main known heavy metals that were reported previously to be in the Dead Sea mud, which are Co, Ni, Pb, Zn, and Cr. Findings had indicated that citric acid was efficient in the removal of the aforementioned heavy metals. Physicochemical parameters that were expected to affect the removal of metals in the Dead Sea mud were optimized. Those parameters were the chelating agent concentration, mixing time and speed, type of washing water, temperature, and pH. The results showed that the best removal of heavy metals from Dead Sea mud can be achieved under optimum citric acid concentration, 1.5 g/50 mL for treatment of 10 g mud. Optimum mixing speed and time were found to be 800 rpm and 1 hr, respectively. Regarding washing water, it was found that the use of the same water for repeated washing provided better removal percentages. pH values and temperature had effect on removal percentages of the heavy metals from mud. However, working at pH 7 and room temperature would provide convenient results for heavy metal removal.     

The evolution of biogeochemistry: revisited

Biogeochemistry - The evolution of biogeochemistry, retraces the important historical steps in part, covered by Gorham (Biogeochemistry 13:199–239, 1991) in the 18–19th...     

Soil micromycete diversity in the hypersaline Dead Sea coastal area,Israel

In the present study, a soil microfungal community was examined over a one-year period (1999–2000) at the western shore of the Dead Sea. A total of 78 species from 40 genera were isolated. The most prominent features of mycobiota of the territory studied were: (i) the prevailing number of melanin-containing micromycetes (46 species, 65.5 % of the total isolate number); (ii) a large share of teleomorphic Ascomyceta (26 species, 18.5 % of isolates); (iii) combination of true soil and plant surface inhabiting species; (iv) spatial and temporal variation of the mycobiota composition; (v) very low fungal density (nearly 500-fold lower than in the Judean Desert soil). These features are formed under the extremely stressful xeric and oligotrophic conditions in which the Dead Sea coastal micromycete community exists. Nine species (Alternaria alternata, A. raphani, Aspergillus niger, Aureobasidium pullulans, Chaetomium globosum, Ch. murorum, Cladosporium cladosporioides, Penicillium aurantiogriseum, and Stachybotrys chartarum) were considered a characteristic micromycete complex for the Dead Sea coastal habitat based on the spatial and temporal occurrence of these species. Many of the micromycetes isolated, including almost all the species listed above, are known to be distributed worldwide occurring in different soil types. This confirms the conclusion of many mycologists working in areas with saline and arid soils that there is no halo-and thermophilous mycobiota characteristic for those soils.     

Preliminary X-ray diffraction studies on 2 Fe-ferredoxin from Halobacterium of the Dead Sea

The 2 Fe-ferredoxin from the Halobacterium of the Dead Sea has been crystallized. The space group is P6₃22 with one protein molecule per asymmetric unit. The cell parameters are $\text{a = b = 60.6}\text{A}\text{?}\text{, c = 127.8}\text{A}\text{?}$. The crystals are stable under radiation and diffract to high resolution.