ARF-GTPase as a Molecular Switch for Polar Auxin Transport Mediated by Vesicle Trafficking in Root Development

Polar auxin transport (PAT), which is controlled precisely by both auxin efflux and influx facilitators and mediated by the cell trafficking system, modulates organogenesis, development and root gravitropism. ADP-ribosylation factor (ARF)-GTPase protein is catalyzed to switch to the GTP-bound type by a guanine nucleotide exchange factor (GEF) and promoted for hybridization to the GDP-bound type by a GTPase-activating protein (GAP). Previous studies showed that auxin efflux facilitators such as PIN1 are regulated by GNOM, an ARF-GEF, in Arabidopsis. In the November issue of The Plant Journal, we reported that the auxin influx facilitator AUX1 was regulated by ARF-GAP via the vesicle trafficking system.¹ In this addendum, we report that overexpression of OsAGAP leads to enhanced root gravitropism and propose a new model of PAT regulation: a loop mechanism between ARF-GAP and GEF mediated by vesicle trafficking to regulate PAT at influx and efflux facilitators, thus controlling root development in plants.Key Words: ADP-ribosylation factor (ARF), ARF-GAP, ARF-GEF, auxin, GNOM, polar transport of auxinPolar auxin transport (PAT) is a unique process in plants. It results in alteration of auxin level, which controls organogenesis and development and a series of physiological processes, such as vascular differentiation, apical dominance, and tropic growth.² Genetic and physiological studies identified that PAT depends on efflux facilitators such as PIN family proteins and influx facilitators such as AUX1 in Arabidopsis.Eight PIN family proteins, AtPIN1 to AtPIN8, exist in Arabidopsis. AtPIN1 is located at the basal side of the plasma membrane in vascular tissues but is weak in cortical tissues, which supports the hypothesis of chemical pervasion.³ AtPIN2 is localized at the apical side of epidermal cells and basally in cortical cells.^1,4 GNOM, an ARF GEF, modulates the localization of PIN1 and vesicle trafficking and affects root development.^5,6 The PIN auxin-efflux facilitator network controls root growth and patterning in Arabidopsis.⁴ As well, asymmetric localization of AUX1 occurs in the root cells of Arabidopsis plants,⁷ and overexpression of OsAGAP interferes with localization of AUX1.¹ Our data support that ARF-GAP mediates auxin influx and auxin-dependent root growth and patterning, which involves vesicle trafficking.¹ Here we show that OsAGAP overexpression leads to enhanced gravitropic response in transgenic rice plants. We propose a model whereby ARF GTPase is a molecular switch to control PAT and root growth and development.Overexpression of OsAGAP led to reduced growth in primary or adventitious roots of rice as compared with wild-type rice.¹ Gravitropism assay revealed transgenic rice overxpressing OsAGAP with a faster response to gravity than the wild type during 24-h treatment. However, 1-naphthyl acetic acid (NAA) treatment promoted the gravitropic response of the wild type, with no difference in response between the OsAGAP transgenic plants and the wild type plants (Fig. 1). The phenotype of enhanced gravitropic response in the transgenic plants was similar to that in the mutants atmdr1-100 and atmdr1-100/atpgp1-100 related to Arabidopsis ABC (ATP-binding cassette) transporter and defective in PAT.⁸ The physiological data, as well as data on localization of auxin transport facilitators, support ARF-GAP modulating PAT via regulating the location of the auxin influx facilitator AUX1.¹ So the alteration in gravitropic response in the OsAGAP transgenic plants was explained by a defect in PAT.Open in a separate windowFigure 1Gravitropism of OsAGAP overexpressing transgenic rice roots and response to 1-naphthyl acetic acid (NAA). (A) Gravitropism phenotype of wild type (WT) and OsAGAP overexpressing roots at 6 hr gravi-stimulation (top panel) and 0 hr as a treatment control (bottom panel). (B) Time course of gravitropic response in transgenic roots. (C and D) results correspond to those in (A and B), except for treatment with NAA (5 × 10⁻⁷ M).The polarity of auxin transport is controlled by the asymmetric distribution of auxin transport proteins, efflux facilitators and influx carriers. ARF GTPase is a key member in vesicle trafficking system and modulates cell polarity and PAT in plants. Thus, ARF-GDP or GTP bound with GEF or GAP determines the ARF function on auxin efflux facilitators (such as PIN1) or influx ones (such as AUX1).ARF1, targeting ROP2 and PIN2, affects epidermal cell polarity.⁹ GNOM is involved in the regulation of PIN1 asymmetric localization in cells and its related function in organogenesis and development.⁶ Although VAN3, an ARF-GAP in Arabidopsis, is located in a subpopulation of the trans-Golgi transport network (TGN), which is involved in leaf vascular network formation, it does not affect PAT.¹⁰ OsAGAP possesses an ARF GTPase-activating function in rice.¹¹ Specifically, our evidence supports that ARF-GAP bound with ARF-GTP modulates PAT and gravitropism via AUX1, mediated by vesicle trafficking, including the Golgi stack.¹Therefore, we propose a loop mechanism between ARF-GAP and GEF mediated by the vascular trafficking system in regulating PAT at influx and efflux facilitators, which controls root development and gravitropism in plants (Fig. 2). Here we emphasize that ARF-GEF catalyzes a conversion of ARF-bound GDP to GTP, which is necessary for the efficient delivery of the vesicle to the target membrane.¹² An opposite process of ARF-bound GDP to GTP is promoted by ARF-GTPase-activating protein via binding. A loop status of ARF-GTP and ARF-GDP bound with their appurtenances controls different auxin facilitators and regulates root development and gravitropism.Open in a separate windowFigure 2Model for ARF GTPase as a molecular switch for the polar auxin transport mediated by the vesicle traffic system.     

A Novel MAPKK Involved in Cell Death and Defense Signaling

A high-throughput in planta overexpression screen of a Nicotiana benthamiana cDNA library identified a mitogen activated protein kinase kinase (MAPKK), NbMKK1, as a potent inducer of hypersensitive response (HR)-like cell death. NbMKK1-mediated cell death was attenuated in plants whereby expression of NbSIPK, an ortholog of tobacco SIPK and Arabidopsis AtMPK6, was knocked down by virus-induced gene silencing (VIGS), suggesting that NbMKK1 functions upstream of NbSIPK. In accordance with this result, NbMKK1 phosphorylated NbSIPK in vitro, and furthermore NbMKK1 and NbSIPK physically interacted in yeast two-hybrid assay. VIGS of NbMKK1 in N. benthamiana resulted in a delay of Phytophthora infestans INF1 elicitin-mediated HR as well as in the reduction of resistance against a non-host pathogen Pseudomonas cichorii. Our data of NbMKK1, together with that of LeMKK4,¹ demonstrate the presence of a novel defense signaling pathway involving NbMKK1/LeMKK4 and SIPK.Key Words: MAPK, defense, cell death, in planta screenMitogen activated protein kinase (MAPK) cascades are highly conserved signaling pathways in eukaryotes, comprising three tiered classes of protein kinase, MAPKKK (MAPKK kinase), MAPKK and MAPK, that sequentially relay phosphorylation signals.² The Arabidopsis genome carries genes for 20 MAPKs, 10 MAPKKs³ and more than 25 MAPKKKs.⁴ In plants, MAPK signaling is known to function in various biotic^4,5 and abiotic⁶ stress responses and cytokinesis.⁷ In defense signaling, extensive research has been carried out for two tobacco MAPKs, SIPK⁸ (salicylic-acid-induced protein kinase; hereafter designated as NtSIPK) and WIPK⁹ (wound-induced protein kinase = NtWIPK), and their orthologs in Arabidopsis¹⁰ (AtMPK6 and ATMPK3, respectively), partly because kinase activities of these two MAPKs are easy to detect by an in gel kinase assay using myeline basic protein (MBP) as substrate.¹¹ Both NtSIPK and NtWIPK are activated by the interaction between host resistance (R)- gene and cognate avirulence gene of pathogen^11,12 and elicitor perception by host cells.^13,14 Shuqun Zhang and his group showed that an upstream kinase of both NtSIPK and NtWIPK is NtMEK2.¹⁵ Transient overexpression of constitutively active NtMEK2 caused phosphorylation of NtSIPK and NtWIPK, resulting in rapid HR-like cell death in tobacco leaves.¹⁵ Later, the same lab showed that overexpression of NtSIPK alone also caused HR-like cell death.¹⁶ The downstream target proteins of NtSIPK and AtMPK6 are being identified and include 1-aminocyclopropane-1-carboxylic acid sythase-6 (ACS-6).^17,18 Although recent studies identified another MAPK cascade (NtMEK1 → Ntf6) involved in defense responses^19,20 we can still say that the current research focus of MAPK defense signaling centers around the cascade comprising [NtMEK2→ NtSIPK/NtWIPK→ target proteins] of tobacco and its orthologous pathways in other plant species.In an effort to search for plant genes involved in HR-like cell death, we have been employing a high-throughput in planta expression screen of N. benthamiana cDNA libraries. In this experimental system, a cDNA library was made in a binary potato virus X (PVX)-based expression vector pSfinx.²¹ The cDNA library was transferred to Agrobacterium tumefaciens, and 40,000 of the bacterial colonies were individually inoculated by toothpicks onto leaf blades of N. benthamiana leaves. The phenotype around the inoculated site was observed 1–2 weeks following the inoculation. This rapid screen identified 30 cDNAs that caused cell death after overexpression, including genes coding for ubiquitin proteins, RNA recognition motif (RRM) containing proteins, a class II ethylene-responsive element binding factor (EREBP)-like protein²² and a MAPKK protein (this work). Such an in planta screening technique has been used before for the isolation of fungal²¹ and oomycete^23,24 elicitors and necrosis inducing genes, but not for isolation of plant genes. Overexpression screening of cDNA libraries is a common practice in prokaryotes, yeast and amimal cells,^25,26 so it is a surprise that this approach has not been systematically applied in plants. Given its throughput, we propose that this virus-based transient overexpression system is a highly efficient way to isolate novel plant genes by functional screen.²⁷ Since overexpression frequently causes non-specific perturbation of signaling, genes identified by overexpression should be further validated by loss-of-function assays, for instance, VIGS.²⁸Overexpression of the identified MAPKK gene, NbMKK1, triggered a rapid generation of H₂O₂, followed by HR-like cell death in N. benthamiana leaves (this work). NbMKK1-GFP fusion protein overexpression also caused cell death, and curiously NbMKK1-GFP was shown to localize consistently in the nucleus. Sequence comparison classified NbMKK1 to the Group D of MAPKKs about which little information is available. So far, a MAPKK, LeMKK4, from tomato belonging to the Group D MAPKKs, was shown to cause cell death after overexpression.¹ Based on amino acid sequence similarity and phylogenetic analyses, LeMKK4 and NbMKK1 seem to be orthologs. To see whether NbMKK1 transduces signals through SIPK and WIPK, we performed NbMKK1 overexpression in N. benthamiana plants whereby the expression of either NbSIPK or NbWIPK (WIPK ortholog in N. benthamiana) was silenced by VIGS. NbMKK1 did not induce cell death in NbSIPK-silenced plants, suggesting that the NbMKK1 cell death signal is transmitted through NbSIPK. Indeed, NbMKK1 phosphorylated NbSIPK in vitro, and NbMKK1 and NbSIPK physically interacted in yeast two-hybrid assay. These results suggest that NbMKK1 interacts with NbSIPK, most probably with its N-terminal docking domain, and phosphorylates NbSIPK in vivo to transduce the cell death signal downstream.NbMKK1 exhibits constitutive expression in leaves. To determine the function of NbMKK1 in defense, we silenced NbMKK1 by VIGS, and such plants were challenged with Phytophthora infestans INF1 elicitin²⁹ and Pseudomonas cichorii, a non-host pathogen. INF1-mediated HR cell death was remarkably delayed in NbMKK1-silenced plants. Likewise, plant defense against P. cichorii was compromised in NbMKK1-silenced plants. These results indicate that NbMKK1 is an important component of signaling of INF1-mediated HR and non-host resistance to P. cichorii.Together, our analyses of NbMKK1 and independent work from Greg Martin''s lab on LeMKK4¹ suggest that a Group D MAPKK, NbMKK1/LeMKK4, functions upstream of SIPK and transduces defense signals in these solanaceous plants (Fig. 1). In plants as well as in other eukaryotes, it is common that kinases have multiple partners. The work on these kinases fits this concept. A single MAPK (e.g., SIPK) is phosphorylated by multiple MAPKKs (e.g., NtMEK2 and NbMKK1), and a single MAPKK (e.g., NtMEK2) can phosphorylate multiple MAPKs (e.g., NtSIPK and NtWIPK).Open in a separate windowFigure 1Defense signaling through NbMKK1/LeMKK4. Two defense signal pathways involving NtMEK2 (indicated as MEK2) → WIPK/SIPK and NtMEK1(indicated as MEK1) → Ntf6 are well documented. By our and Pedley and Martin''s¹ works, another novel MAPKK, NbMKK1/LeMKK4 was demonstrated to participate in defense signaling by phosphorylation of SIPK.     

Structure and Function of Glycosylated Tandem Repeats from Candida albicans Als Adhesins

Tandem repeat (TR) regions are common in yeast adhesins, but their structures are unknown, and their activities are poorly understood. TR regions in Candida albicans Als proteins are conserved glycosylated 36-residue sequences with cell-cell aggregation activity (J. M. Rauceo, R. De Armond, H. Otoo, P. C. Kahn, S. A. Klotz, N. K. Gaur, and P. N. Lipke, Eukaryot. Cell 5:1664–1673, 2006). Ab initio modeling with either Rosetta or LINUS generated consistent structures of three-stranded antiparallel β-sheet domains, whereas randomly shuffled sequences with the same composition generated various structures with consistently higher energies. O- and N-glycosylation patterns showed that each TR domain had exposed hydrophobic surfaces surrounded by glycosylation sites. These structures are consistent with domain dimensions and stability measurements by atomic force microscopy (D. Alsteen, V. Dupres, S. A. Klotz, N. K. Gaur, P. N. Lipke, and Y. F. Dufrene, ACS Nano 3:1677–1682, 2009) and with circular dichroism determination of secondary structure and thermal stability. Functional assays showed that the hydrophobic surfaces of TR domains supported binding to polystyrene surfaces and other TR domains, leading to nonsaturable homophilic binding. The domain structures are like “classic” subunit interaction surfaces and can explain previously observed patterns of promiscuous interactions between TR domains in any Als proteins or between TR domains and surfaces of other proteins. Together, the modeling techniques and the supporting data lead to an approach that relates structure and function in many kinds of repeat domains in fungal adhesins.Yeast adhesins are a diverse set of cell adhesion proteins that mediate adhesion to host cells, environmental substrates, other fungi, and coinfecting bacteria (6, 8, 20, 21, 23, 29). The adhesins share common features, including compact N-terminal domains similar to Ig or lectin domains, Thr-rich midpieces, often in tandem repeats, and long highly glycosylated Ser/Thr-rich C-terminal regions that extend the functional domains out from the cell surface. No structures for the Thr-rich midpieces are known, but they can mediate aggregation of fungal cells (33, 35, 47). The prevalence and conservation of such repeats argue that they are functionally important, despite limited data on their structure and function.In Candida albicans, the Als adhesins are homologous proteins, products of 8 loci that encode numerous alleles of cell surface adhesins (16). In each mature Als protein, there are, from the N terminus, three tandem Ig-like domains, a β-sheet-rich conserved 127-residue amyloid-forming T region, a variable number of 36-residue tandem repeats (TRs), and a highly glycosylated stalk region that extends the N-terminal domains away from the cell surface (Fig. 1) (16, 33, 41). The C termini of these and other wall-associated adhesins are covalently cross-linked into the cell wall through transglycosylation of a modified glycosylphosphatidylinositol (GPI) anchor (18, 25). This modular design, including tandem repeats, is typical of fungal adhesins (8).Open in a separate windowFig. 1.Schematic diagram of the sequence of Als5p. The regions are named above, and the number of amino acid residues in each region is shown below. The modeled sequences are in the TR region.The Als protein Ig-like region, T region, and TR region all have protein-protein interaction activities (26, 33, 35). The Ig-like regions can interact with diverse mammalian proteins, presumably in a way analogous to antibody-antigen binding, as has been shown in the homologous protein α-agglutinin from Saccharomyces cerevisiae (8, 24, 26, 35). The T regions interact through formation of amyloid-like structures both in vivo and in vitro (33, 34a, 36). An insight into the function of the tandem repeats followed from observations that Als proteins initiate and maintain cell-to-cell aggregations, either spontaneously (“autoaggregation”) or following adhesion to a bead-bound defined ligand (10, 11, 36). Aggregation is more extensive for Als proteins with more tandem repeats (26, 35). This result suggested that the tandem repeats are uniquely structured to facilitate or mediate the aggregative function. Circular dichroism spectroscopy of the TR region of Als5p shows a β-sheet-rich structure in the soluble protein (35).In support of their direct involvement in aggregation, the repeat region of the C. albicans adhesin Als5p mediates cell-cell aggregation in the absence of the Ig-like and T domains (35). Moreover, the repeats can also potentiate binding of Als5p to fibronectin (35). Thus, the TR domains mediate cellular aggregation and increased binding to fibronectin. In addition, TR domains and their amino acid sequences are highly conserved across several Candida species (3). These properties need to be explained by their three-dimensional structure.Because there are no homologous structures known, we modeled by two independent ab initio methods. Rosetta assembles structures by combining short peptide structures extracted from the protein structural database PDB (38), then combines structures in a Monte Carlo approach, and assesses energetics of assembled structures. Rosetta has recently been shown to generate accurate models for protein-sized domains (40). We also predicted structures with LINUS, which generates randomized structures and rapidly estimates energetics to choose low-energy models (45). The models were supported by structural analyses with atomic force microscopy and circular dichroism spectroscopy. Functional assays showed that the TR domains can mediate binding activities predicted from the calculated structures.     

Regulation of stomatal opening by the guard cell expansin AtEXPA1

Stomatal movement is strictly regulated by various intracellular and extracellular factors in response environmental signals. In our recent study, we found that an Arabidopsis guard cell expressed expansin, AtEXPA1, regulates stomatal opening by altering the structure of the guard cell wall. This addendum proposes a mechanism by which guard cell expansins regulate stomatal movement.Key words: expansin, stomatal movement, AtEXPA1, guard cell, wall looseningStomatal movement is the most popular model system for cellular signaling transduction research. A complicated complex containing many proteins has been proposed to control stomatal responses to outside stimuli. The known regulation factors are primarily located in the nucleus, cytoplasm, plasma membrane and other intracellular organelles.^1,2 Although the cell wall structure of the stomata is different from that of other cells,^3,4 the presence of stomatal movement regulation factors in the cell wall has seldom been reported in reference ⁵. In our previous work, we found that extracellular calmodulin stimulates a cascade of intracellular signaling events to regulate stomatal movement.⁶ The involvement of this signaling pathway is the first evidence that cell wall proteins play an important role in regulation of stomatal opening. Cell wall-modifying factors constitute a major portion of cell wall proteins. However, the role of these factors in the regulation of stomatal movement is not yet known.Expansins are nonenzymatic proteins that participate in cell wall loosening.^7–9 Expansins were first identified as “acid-growth” factors because they have much higher activities at acidic pHs.^10,11 It has been reported that expansins play important roles in plant cell growth, fruit softening, root hair emergence and other developmental processes in which cell wall loosening is involved.^7–9,12,13 Wall loosening is an essential step in guard cell swelling and the role of stomatal expansins was investigated. AtEXPA1 is an Arabidopsis guard-cell-specific expansin.^13,14 Over-expressing AtEXPA1 increases the rate of light-induced stomatal opening,^14,15 while a potential inhibitor of expansin activity, AtEXPA1 antibody, reduces the sensitivity of stomata to stimuli.¹⁴ We showed that the transpiration rate and the photosynthesis rate in plant lines overexpressing AtEXPA1 were nearly two times the rates for wild-type plants (Fig. 1). These in plant data revealed that expansins accelerated stomatal opening under normal physiological conditions. In addition, the increases in the transpiration and photosynthesis rates strongly suggested the possibility of exploiting expansin-regulated stomatal sensitivity to modify plant drought tolerance. Compared with the effect of hydrolytic cell wall enzymes, the destruction of cell wall structures induced by expansins is minimal. In addition, it is very difficult to directly observe the changes in the guard cell wall structure caused by expansins during stomatal movement. Our recent work showed that, in AtEXPA1-overexpressing plants, the volumetric elastic modulus is lower than in wild-type plants,¹⁴ which indicates the wall structure was loosened and that the cell wall was easier to extend. Taken together, our data suggest that expansins participate in the regulation of stomatal movement by modifying the cell walls of guard cells.Open in a separate windowFigure 1Effects of AtEXPA1 overexpression on transpiration rates and photosynthesis rates. The transpiration rate (left) and photosynthesis rate (right) of wild-type and transgenic AtEXPA1 lines were measured at 10:00 AM in the greenhouse after being watered overnight. The illumination intensity was 180 µmol/m²·s. Bars represent the standard error of the mean of at least five plants per line.It is well known that the activation of proton-pumping ATPase (H⁺-ATPase) in the plasma membrane is an early and essential step in stomatal opening.¹⁶ The action of the pump results in an accumulation of H⁺ outside of the cell, increases the inside-negative electrical potential across the plasma membrane and drives potassium uptake through the voltage-gated, inward-rectifying K⁺ channels.^17–19 The main function of the H⁺ pump is well accepted to create an electrochemical gradient across the plasma membrane; however, the other result is the acidification of the guard cell wall, which may also contribute to stomatal opening. A possible mechanism responsible for this effect is as follows. Expansins are in an inactive state when the stomata are in the resting state. Stomatal opening signals induce wall acidification and activate expansins. Then, the expansins move along with cellulose microfibrils and transiently break down hydrogen bonding between hemicellulose and the surface of cellulose microfibrils,^20,21 facilitating the slippage of cell wall polymers under increasing guard cell turgor pressure. The guard cell then swells and the stomata open (Fig. 2).Open in a separate windowFigure 2Model of how guard cell wall expansins regulate stomatal opening. Environmental stimuli, e.g., light, activate guard cell plasma membrane H⁺-ATPases to pump H⁺ into the extracellular wall space. The accumulation H⁺ acidifies the cell wall and induces the activation of expansin. The active expansin disrupts non-covalent bonding between cellulose microfibrils and matrix glucans to enable the slippage of the cell wall. The wall is loosened coincident with guard cell swelling and without substantial breakdown of the structure.Although our results indicate that AtEXPA1 regulates stomatal movement, the biochemical and structural mechanism by which AtEXPA1 loosens the cell wall remains to be discovered. It remains to figure out the existing of other expansins or coordinators involving in this process. In addition, determining the roles of expansins and the guard cell wall in stomatal closing is another main goal of future research.     

Anticipating future conditions via trajectory sensitivity

Plants are known to be highly responsive to environmental heterogeneity and normally allocate more biomass to organs that grow in richer patches. However, recent evidence demonstrates that plants can discriminately allocate more resources to roots that develop in patches with increasing nutrient levels, even when their other roots develop in richer patches. Responsiveness to the direction and steepness of spatial and temporal trajectories of environmental variables might enable plants to increase their performance by improving their readiness to anticipated resource availabilities in their immediate proximity. Exploring the ecological implications and mechanisms of trajectory-sensitivity in plants is expected to shed new light on the ways plants learn their environment and anticipate its future challenges and opportunities.Key words: Gradient perception, phenotypic plasticity, anticipatory responses, plant behavior, plant learningNatural environments present organisms with myriad challenges of surviving and reproducing under changing conditions.¹ Depending on its extent, predictability and costs, environmental heterogeneity may select for various combinations of genetic differentiation and phenotypic plasticity.^2–6 However, phenotypic plasticity is both limited and costly.⁷ One of the main limitations of phenotypic plasticity is the lag between the perception of the environment and the time the products of the plastic responses are fully operational.⁷ For instance, the developmental time of leaves may significantly limit the adaptive value of their plastic modification due to mismatches between the radiation levels and temperatures prevailing during their development and when mature and fully functional.^8,9 Accordingly, selection is expected to promote responsiveness to cues that bear information regarding the probable future environment.^9,10Indeed, anticipatory responses are highly prevalent, if not universal, amongst living organisms. Whether through intricate cerebral processes, such as in vertebrates, nervous coordination, as in Echinoderms,¹¹ or by relatively rudimentary non-neural processes, such as in plants¹² and bacteria,¹³ accumulating examples suggest that virtually all known life forms are able to not only sense and plastically respond to their immediate environment but also anticipate probable future conditions via environmental correlations.¹⁰Perhaps the best known example of plants'' ability to anticipate future conditions is their responsiveness to spectral red/far-red cues, which is commonly tightly correlated with future probability of light competition.¹⁴ Among others, plants have been shown to respond to cues related to anticipated herbivory^15,16 and nitrogen availability.¹⁷ Imminent stress is commonly anticipated by the perception of a prevailing stress. For example, adaptation to anticipated severe stress was demonstrated to be inducted by early priming by sub-acute drought,¹⁸ root competition¹⁹ and salinity.²⁰Future conditions can also be anticipated by gradient perception: because resource and stress levels are often changing along predictable spatial and temporal trajectories, spatio-temporal dynamics of environmental variables might convey information regarding anticipated growth conditions (Fig. 1). For example, the order of changes in day length, rather than day length itself, are known to assist plants in differentiating fall from spring and thus avoid blooming in the wrong season.²¹ In addition, responsiveness to environmental gradients as such, i.e., sensitivity to the direction and steepness of environmental trajectories, independently from the stationary levels of the same factors, has been demonstrated in higher organisms, such as the perception of acceleration in contrast to velocity;²² and the dynamics of skin temperature in contrast to stationary skin temperature;²³ where the adaptive value of the second-order derivatives of environmental factors is paramount. Similar perception capabilities have also been demonstrated in rudimentary life forms such as bacteria (reviewed in refs. ¹³ and ²⁴) and plants.^25,26 Specifically, perception of environmental trajectories might assist organisms to both anticipate future conditions and better utilize the more promising patches in their immediate environment.^27,28Open in a separate windowFigure 1Trajectory sensitivity in plants. The hypothetical curves depict examples of spatio-temporal trajectories of resource availability, which might be utilized by plants to increase foraging efficiency in newly-encountered patches. When young or early-in-the-season (segment 1–2), plants are expected to allocate more resources to roots that experience the most promising (steepest increases or shallowest decreases) resource availabilities (e.g., allocating more resources to organs in INC-1 than INC-2). In addition, plants are predicted to avoid allocation to roots experiencing decreasing trajectories (DEC, segment 1–2); although temporarily more abundant with resources, such DEC patches are expected to become poorer than alternative patches in the longer run (segment 2–3).²⁹ However, responsiveness to environmental trajectories is only predicted where the expected period of resource uptake is relatively long, e.g., when plants are still active in segment 2–3, a stipulation which might not be fulfilled in e.g., short-living annuals with life span shorter than segment 1–2.In a recent study, Pisum plants have been demonstrated to be sensitive to temporal changes in nutrient availabilities. Specifically, plants allocated greater biomass to roots growing under dynamically-improving nutrient levels than to roots that grew under continuously higher, yet stationary or deteriorating, nutrient availabilities.²⁹ Allocation to roots in poorer patches might seem maladaptive if only stationary nutrient levels are accounted for, and indeed-almost invariably, plants are known to allocate more resources to organs that experience higher (non-toxic) resource levels (reviewed in ref. ³³). Accordingly, the new findings suggest that rather than merely responding to the prevailing nutrient availabilities, root growth and allocation are also responsive to trajectories of nutrient availabilities (Fig. 1).¹⁰Although Shemesh et al.²⁹ demonstrated trajectory-sensitivity of individual roots to temporal gradient of nutrient availabilities, it is likely that this sensitivity helps plants sense spatial gradients, whereby root tips perceive changes in growth conditions as they move through space.³⁴ Interestingly, because the trajectory-sensitivity was observed when whole roots were subjected to changing nutrient levels, it is likely that trajectory sensitivity in roots is based on the integration of sensory inputs perceived by yet-to-be-determined parts of the root over time, i.e., temporal sensitivity/memory (e.g. reviewed in ref. ³⁵), rather than on the integration of sensory inputs at different locations on the same individual roots (i.e., spatial sensitivity).Besides the direction of change, it is hypothesized that plants are also sensitive to the steepness of environmental trajectories (Fig. 1). This might be especially crucial in short-living annuals, which are expected to only be responsive to trajectories steep enough to be indicative of changes in growth conditions before the expected termination of the growth season (Fig. 1).Studying responsiveness to environmental variability is pivotal for understanding the ecology and evolution of any living organism. However, until recently most attention has been given to the study of responses to stationary spatial and temporal heterogeneities in growth conditions. Exploring the ecological implications and mechanisms of trajectory sensitivity in plants is expected to shed new light on the ways plants learn their immediate environment and anticipate its future challenges and opportunities.     

Ethylene-Stimulated Nutations Do Not Require ETR1 Receptor Histidine Kinase Activity

Ethylene influences the growth and development of plants through the action of receptors that have homology to bacterial two-component receptors. In bacteria these receptors function via autophosphorylation of a His residue in the kinase domain followed by phosphotransfer to a conserved Asp residue in a response regulator protein. In Arabidopsis, two of the five receptor isoforms are capable of His kinase activity. However, the role of His kinase activity and phosphotransfer is unclear in ethylene signaling. A previous study showed that ethylene stimulates nutations of the hypocotyl in etiolated Arabidopsis seedlings that are dependent on the ETR1 receptor isoform. The ETR1 receptor is the only isoform in Arabidopsis that contains both a functional His kinase domain and a receiver domain for phosphotransfer. Therefore, we examined the role that ETR1 His kinase activity and phosphotransfer plays in ethylene-stimulated nutations.Key Words: ethylene, nutations, signal transduction, receptors, histidine kinase, phosphotransfer, two component signallingThe gaseous plant hormone ethylene has a role in a variety of physiological events in higher plants such as seed germination, abscission, senescence, fruit ripening, and growth regulation.¹ In etiolated Arabidopsis seedlings, ethylene causes reduced growth of the hypocotyl and root, increased radial expansion of the hypocotyl, and increased tightening of the apical hook.^2,3Previous studies have identified components in the ethylene signaling pathway and led to an inverse-agonist model for signal transduction.^4,5 According to this model, responses to ethylene are mediated by a family of five receptors (ETR1, ERS1, ETR2, EIN4, ERS2) in Arabidopsis that have homology to bacterial two-component receptors.^6–9 In bacterial systems, two-component receptors transduce signal via the autophosphorylation of a His residue in the kinase domain, followed by the transfer of phosphate to a conserved Asp residue in the receiver domain of a response regulator protein.¹⁰ The ethylene receptors of plants can be divided into two subfamilies based on sequence homology in the ethylene-binding domains.¹¹ ETR1 and ERS1 belong to subfamily I, contain all amino acid residues needed for His kinase activity,^6,12 and show His kinase activity in vitro.^13,14 ETR2, EIN4, and ERS2 belong to subfamily II, contain degenerate His kinase domains^7,9 and have Ser/Thr kinase activity in vitro.¹⁴ ERS1 shows both His and Ser/Thr kinase activities in vitro depending on the assay conditions used.¹⁴ While the kinase domain of ETR1 appears to be required for signaling,¹⁵ kinase activity is not.^15–17 It is unclear whether or not histidine kinase activity is involved in ethylene signaling, although, this activity might be involved in growth recovery after ethylene removal.¹⁷Recently, high-resolution, time-lapse imaging revealed that prolonged treatment with ethylene stimulates nutational bending of etiolated Arabidopsis hypocotyls.¹⁸ Nutations are oscillatory bending movements caused by localized differential growth¹⁹ that were originally termed “circumnutations”.²⁰ Nutations have been posited to be important for seedlings to penetrate through the soil²⁰ and thus could be critical for seedling survival. In support of this hypothesis, nutations of rice roots have been reported to increase soil penetration.²¹Mutational analysis revealed that many of the known ethylene signaling components including CTR1, EIN2, EIN3 and EIL1 are involved in signaling leading to ethylene-stimulated nutations.¹⁸ Surprisingly, loss-of-function mutations in ETR1 eliminated ethylene-stimulated nutations while combinatorial loss-of-function mutations in the other four receptor isoforms led to constitutive nutations in air.¹⁸ These results support a model where all the receptors are involved in ethylene-stimulated nutations but the ETR1 receptor is required for and has a contrasting role from the other receptor isoforms in this nutation phenotype. Since the ETR1 receptor is the only receptor isoform that contains both a functional His-kinase domain and a receiver domain,^6,13,14 the roles of His kinase activity and phosphorelay in the nutation phenotype were examined in the current study.Previous work showed that the nutation phenotype in etr1-7 loss-of-function mutants could be rescued with a wild-type, genomic ETR1 transgene.¹⁸ Etr1-7 mutants transformed with a kinase-inactivated genomic ETR1 transgene (gETR1 (G₂)) where the two conserved glycines in the G₂ box of the histidine kinase domain (G545, G547) were changed to alanines were examined to determine if ETR1 His kinase activity is required for ethylene-stimulated nutations. This construct lacks histidine autophosphorylation in vitro.²² Figure 1 shows that ethylene stimulates nutations in etr1-7 gETR1(G₂) seedlings. The period of these nutations was 4.7 ± 1.5 h which is similar to values obtained previously for wild-type seedlings (4.7 ± 1h) and somewhat longer than etr1-7 seedlings transformed with wild-type, genomic ETR1 (3.2 ± 0.6 h). However, the amplitude of these nutations (3.7 ± 1.0°) was approximately half that of nutations previously observed in wild-type seedlings (9.1 ± 6.0°) as well as etr1-7 seedlings transformed with wild-type, genomic ETR1 (8.2 ± 3.6°). This suggests that ETR1 histidine kinase activity is not required for ethylene-stimulated nutations but might have a role in modulating nutation amplitudes.Open in a separate windowFigure 1Ethylene stimulates nutations of etr1-7 seedlings transformed with a kinase-inactivated ETR1 transgene. The hypocotyl angles for four etr1-7 mutants transformed with a kinase-inactivated genomic ETR1 transgene (gETR1(G₂)) are shown. Transformants were obtained from Eric Schaller and have been described previously.²² In this and the following figure, etiolated Arabidopsis seedlings were imaged from the side at 15 min intervals while growing along a vertically orientated agar plate and the hypocotyl angle measured as described previously.¹⁸ Black and gray lines are used to help distinguish the movements of individual seedlings. All seedlings were grown in the presence of 5 µM AVG to block biosynthesis of ethylene by the seedlings. Seedlings were grown in air for 2 h prior to treatment with 10 µL L⁻¹ ethylene (Open in a separate window).To determine whether phosphotransfer through the receiver domain of ETR1 is required for the nutation phenotype, seedlings deficient in ethylene receptor isoforms containing a receiver domain (ETR1, ETR2, EIN4) were transformed with a mutant ETR1 transgene lacking the conserved Asp₆₅₉ required for phosphotransfer (getr1-[D]). Previous work showed that etr1-6 etr2-3 ein4-4 triple loss-of-function mutant seedlings failed to nutate and this nutation phenotype could be rescued when these mutants were transformed with wild-type, genomic ETR1 transgene.¹⁸ Similarly, transformation of the etr1-6 etr2-3 ein4-4 triple mutants with getr1-[D] rescued the nutation phenotype in most seedlings observed (Fig. 2). However, some seedlings (four of the eleven observed) failed to nutate. The reason for this variable rescue is unclear but could reflect differences in expression levels of the mutant transgene in individual plants. Alternatively, this variable rescue could reflect functional differences between the mutant and wild-type transgene suggesting a modulating role for phosphotransfer through the receiver domain of ETR1. Two independent lines were observed with similar results. Of those that did nutate, the period of nutations was 5.0 ± 1.2 h and the amplitude 7.6 ± 3.8° which is similar to values obtained previously for wild-type plants as well as plants transformed with a wild-type, genomic ETR1 transgene.¹⁸Open in a separate windowFigure 2Ethylene stimulates nutations of etr1-6 etr2-3 ein4-4 seedlings transformed with an ETR1 transgene mutated at Asp₆₅₉. The hypocotyl angles from seven etr1-6 etr2-3 ein4-4 triple mutants transformed with an ETR1 transgene mutated at Asp₆₅₉ (getr1[D]) are shown in two panels. One seedling in (A) (black) had no measurable nutations while one in (B) (black) had very small nutations.Conclusions from this and the previous study are that the ETR1 receptor has a unique role in ethylene-stimulated nutations. However, this role does not require either histidine kinase activity or phosphotransfer through the receiver domain of ETR1.     

Cell Migration from Baby to Mother

Fetal cells migrate into the mother during pregnancy. Fetomaternal transfer probably occurs in all pregnancies and in humans the fetal cells can persist for decades. Microchimeric fetal cells are found in various maternal tissues and organs including blood, bone marrow, skin and liver. In mice, fetal cells have also been found in the brain. The fetal cells also appear to target sites of injury. Fetomaternal microchimerism may have important implications for the immune status of women, influencing autoimmunity and tolerance to transplants. Further understanding of the ability of fetal cells to cross both the placental and blood-brain barriers, to migrate into diverse tissues, and to differentiate into multiple cell types may also advance strategies for intravenous transplantation of stem cells for cytotherapeutic repair. Here we discuss hypotheses for how fetal cells cross the placental and blood-brain barriers and the persistence and distribution of fetal cells in the mother.Key Words: fetomaternal microchimerism, stem cells, progenitor cells, placental barrier, blood-brain barrier, adhesion, migrationMicrochimerism is the presence of a small population of genetically distinct and separately derived cells within an individual. This commonly occurs following transfusion or transplantation.^1–3 Microchimerism can also occur between mother and fetus. Small numbers of cells traffic across the placenta during pregnancy. This exchange occurs both from the fetus to the mother (fetomaternal)^4–7 and from the mother to the fetus.^8–10 Similar exchange may also occur between monochorionic twins in utero.^11–13 There is increasing evidence that fetomaternal microchimerism persists lifelong in many child-bearing women.^7,14 The significance of fetomaternal microchimerism remains unclear. It could be that fetomaternal microchimerism is an epiphenomenon of pregnancy. Alternatively, it could be a mechanism by which the fetus ensures maternal fitness in order to enhance its own chances of survival. In either case, the occurrence of pregnancy-acquired microchimerism in women may have implications for graft survival and autoimmunity. More detailed understanding of the biology of microchimeric fetal cells may also advance progress towards cytotherapeutic repair via intravenous transplantation of stem or progenitor cells.Trophoblasts were the first zygote-derived cell type found to cross into the mother. In 1893, Schmorl reported the appearance of trophoblasts in the maternal pulmonary vasculature.¹⁵ Later, trophoblasts were also observed in the maternal circulation.^16–20 Subsequently various other fetal cell types derived from fetal blood were also found in the maternal circulation.^21,22 These fetal cell types included lymphocytes,²³ erythroblasts or nucleated red blood cells,^24,25 haematopoietic progenitors^7,26,27 and putative mesenchymal progenitors.^14,28 While it has been suggested that small numbers of fetal cells traffic across the placenta in every human pregnancy,^29–31 trophoblast release does not appear to occur in all pregnancies.³² Likewise, in mice, fetal cells have also been reported in maternal blood.^33,34 In the mouse, fetomaternal transfer also appears to occur during all pregnancies.³⁵     

Activation and manipulation of host responses by a Gram-positive bacterium

The interaction between tomato plants and Clavibacter michiganensis subsp. michiganensis (Cmm) represents a model pathosystem to study the interplay between the virulence determinants of a Gram-positive bacterium and the attempt of a crop plant to counteract pathogen invasion. To investigate plant responses activated during this compatible interaction, we recently analyzed gene expression profiles of tomato stems infected with Cmm. This analysis revealed activation of basal defense responses that are typically observed upon plant perception of pathogen-associated molecular patterns. In addition, Cmm infection upregulated the expression of host genes related to ethylene synthesis and response. Further analysis of tomato plants impaired in ethylene perception and production demonstrated an important role for ethylene in the development of disease symptoms. Here we discuss possible molecular strategies used by the plant to recognize Cmm infection and possible mechanisms employed by the pathogen to interfere with the activation of plant defense responses and promote disease.Key words: tomato, Clavibacter michiganensis subsp. michiganensis, ethylene, basal defense, pathogen-associated molecular patternsLittle is known on the strategies employed by Gram-positive phytopathogenic bacteria to sense the presence of the host plant, penetrate and colonize tissue, and counteract plant defense responses. Also largely unexplored are the molecular mechanisms associated with detection of Gram-positive bacteria by the host plant and with the activation of attempted defense responses.Among the most devastating Gram-positive disease agents are actinobacteria of the genus Clavibacter whose subspecies cause systemic infections of the xylem in different plant species.¹ The subspecies Clavibacter michiganensis subsp. michiganensis (Cmm) causes bacterial wilt and canker of tomato (Solanum lycopersicum), an economically important disease causing yield losses worldwide.¹ In recent years important insight into the molecular mechanism of Cmm pathogenicity has been achieved,¹ and genome sequence of a Cmm strain has been established.² Major Cmm pathogenicity determinants are plasmid borne and include the β-1,4-endocellulase CelA,³ and the putative serine protease Pat-1.⁴ Additional genes important for virulence are located in a pathogenicity island of about 129 kb on the Cmm chromosome which has a relatively low G + C content and is required for effective Cmm colonization of tomato plants.²Tomato is an economically important crop amenable to genetic analysis and transformations. Many resources are available for this plant species, including germplasm collections, natural and induced mutants, an extensive expressed sequence tag database and an ongoing genome sequencing project.⁵ In addition, because of its experimental tractability, tomato plants have been widely used to study plant disease resistance and susceptibility. As genetic and molecular tools for both Cmm and tomato are in place, the tomato-Cmm pathosystem represents an excellent model to study the interplay between virulence determinants of a Gram-positive phytopathogenic bacterium and defense responses of a crop plant.To get insight into host responses occurring during the tomato-Cmm compatible interaction and molecular mechanisms associated with the development of wilt and canker disease symptoms, we recently analyzed gene expression profiles of tomato stems infected with Cmm.⁶ This analysis revealed a clear activation of basal defense responses, which are typically observed upon plant perception of pathogen-associated molecular patterns (PAMPs).⁷ These include production and scavenging of free oxygen radicals, induction of defense-related genes, enhanced protein turnover, and hormone biosynthesis. Interestingly, several tomato genes encoding proteins with characteristics of cell-surface receptors were differentially expressed in response to Cmm infection.⁶ These proteins can be considered as candidate receptors for Cmm PAMPs and include two receptor-like kinases, a homolog of the receptor for the fungal PAMP ethylene-inducing xylanase from Trichoderma viride,⁸ and the Ve1 resistance protein, which confers resistance in tomato to the vascular disease Verticillium wilt.⁹It remains to be elucidated what are the Cmm PAMPs perceived by tomato plants. Cold-shock protein from Gram-positive bacteria and different microbial patterns of Gram-negative bacteria, including lipopolysaccharides, flagellin, and the translational elongation factor EF-TU, were shown to act as PAMPs in plants.¹⁰ Similarly, Cmm cold shock protein or cell wall components, such as peptidoglycan, lipoteichoic acid, and lipopeptides, which function as Gram positive-derived PAMPs in animal systems¹¹, may act as PAMPs during the tomato-Cmm interaction. Additional possible Cmm PAMPs are exopolysaccharides, which are produced in large amounts by the bacterium and may interact directly with surface-exposed plant proteins.¹ The numerous extracellular cell wall degrading enzymes secreted by Cmm may also function as PAMPs, as observed for the fungal ethylene-inducing xylanase.^2,12 Alternatively, by virtue of their hydrolytic activity, these enzymes may release plant cell wall fragments that are recognized by PAMP receptors. Indeed, different β-glucan fragments released from plant cell walls were shown to elicit plant basal defense responses.^13,14How Cmm copes with the activation of basal defense responses is largely unknown. Many potential virulence determinants that might interfere with the plant defense reaction are clustered in the Cmm pathogenicity island, which is essential for effective plant colonization.² Several extracellular serine proteases are encoded in this region and inactivation of part of them by gene replacement drastically reduced Cmm colonization of tomato plants.² Although their targets are still unknown, these proteins might interfere with plant signaling pathways as it was described for certain cysteine proteases that serves in Gram-negative bacteria as suppressors of plant defenses.¹⁵ An additional candidate for interference with plant signaling may be a tomatinase, also encoded in the Cmm pathogenicity island, because hydrolysis products of α-tomatine were shown to suppress plant defense responses in a fungal system.¹⁶In addition to detecting the activation of basal defense responses, host gene expression profiling during the tomato-Cmm interaction unraveled the involvement of ethylene in disease development.⁶ In fact, Cmm infection of tomato stems was found to induce expression of host genes related to ethylene biosynthesis and response (Fig. 1).⁶ Further analysis of ethylene-insensitive Never ripe mutants and transgenic plants with reduced ethylene synthesis indicated that ethylene is required for normal development of wilting symptoms (Fig. 2), but not for the activation of defense-related genes or bacterial colonization.⁶ We hypothesize that during infection ethylene synthesis and response are manipulated by Cmm virulence determinants to promote disease. Alternatively, ethylene is released as part of the host responses activated by bacterial recognition, or as a result of tissue maceration. In line with our first hypothesis, the type III effectors AvrPto and AvrPtoB from Pseudomonas syringae pv. tomato were shown to promote enhanced disease symptoms in tomato leaves, in part, by upregulating genes involved in ethylene production.¹⁷ Interestingly, expression in tomato plants of AvrPto or AvrPtoB, and infection with Cmm resulted in the upregulation of the SlACO1 gene encoding the key enzyme of ethylene biosynthesis ACC oxidase.^6,17Open in a separate windowFigure 1Kinetics of ACC oxidase (ACO) gene expression in tomato plants inoculated with Cmm. Six-week-old tomato plants were infected with a Cmm suspension (10⁸ cfu/ml) or mock-inoculated. Total RNA was extracted from stem samples harvested at the indicated day post-inoculation (dpi) and subjected to Northern blot analysis using as probe a 550 bp fragment of the SlACO1 gene, which shares high homology with other ACO family members (upper). Ethidium bromide staining shows the amount of RNA loaded in each lane (lower).Open in a separate windowFigure 2Effect of impaired ethylene sensitivity on development of wilt symptoms in tomato plants infected with Cmm. Six-week-old plants were infected with a Cmm suspension (10⁸ cfu/ml) and examined for development of wilt symptoms during a 20-day period. The percentage of plants showing wilt symptoms was calculated in a group of at least 30 plants for the ethylene-insensitive mutant Never ripe and wild-type Pearson plants. Data are representative of two independent experiments.In conclusion, future research challenges for understanding how host responses are regulated by the plant and manipulated by a Gram-positive bacterium will be the isolation of Cmm PAMPs and their plant receptors, the identification of Cmm virulence determinants and the elucidation of their mode of action.