An improved method for the enzymatic transformation of nucleosides into 5′-monophosphates

An improved method to transform nucleosides into 5-monophosphates using nucleoside phosphotransferase from Erwinia herbicola is reported. The method is based on the shift in the equilibrium state of the reaction to the formation of desired product due to its precipitation by Zn²⁺. Under optimal conditions, the extent of nucleoside transformations into nucleoside-5-monophosphates were 41–91% (mol).Revisions requested 22 September 2004; Revisions received 11 October 2004     

An improved capping unit for stabilizing the ends of associated β-strands

Understanding protein beta structures has been hindered by the challenge of designing small, well-folded β-sheet systems. A β-capping motif was previously designed to help solve this problem, but not without limitations, as the termini of this β-cap were not fully available for chain extension. Combining Coulombic side chain attractions with a Trp/Trp edge-to-face interaction we produced a new capping motif that provided greater β-sheet stability. This stability was maintained even in systems lacking a turn locus with a high propensity for chain direction reversal. The Coulombic cap was shown to improve β-sheet stability in a number of difficult systems, hence providing an additional tool for protein structure and folding studies.     

An improved bioassay for the detection of Bacillus thuringiensis β-exotoxin

Some Bacillus thuringiensis strains secrete β-exotoxin, which is an insecticidal, thermostable adenine nucleotide analogue. Discrepancies between detection of β-exotoxin by high-performance liquid chromatography and insect bioassays have shown the importance of bioassays in the determination of β-exotoxin production. With the aim of improving the fly β-exotoxin bioassay, a range of fly diets were evaluated and the best performing diet was incorporated into a novel β-exotoxin bioassay. The improved bioassay is characterised by good control pupation percentages, low variability, easy setup and monitoring. The bioassay allowed unambiguous differentiation between β-exotoxin producing and non-producing strains, and is suitable for the routine screening of B. thuringiensis strains for β-exotoxins.     

An improved method for the detection of β-galactosidase activity,and its application to G Mi -gangliosidosis and mucopolysaccharidosis

Journal of Molecular Histology - The addition of sodium chloride (O.IM final concentration) to the indigogenic medium described by Lojda for the detection of β-galactosidase activity...     

An improved synthesis of dansylated α-galactosylceramide and its use as a fluorescent probe for the monitoring of glycolipid uptake by cells

A highly efficient synthesis of the biologically important fluorescent probe dansyl α-GalCer is presented. Key in our strategy is the incorporation of the fluorescent dansyl group at an early stage in the synthesis to facilitate in the monitoring and purification of intermediates via TLC and flash column chromatography, respectively, and the use of a high yielding α-selective glycosylation reaction between the phytosphingosine lipid and a galactosyl iodide donor. The ability of dansyl α-GalCer to activate iNKT cells and to serve as a fluorescent marker for the uptake of glycolipid by dendritic cells is also presented.     

An improved synthesis of 6β-hydroxy-5β-pregnane-3,20-dione

6β-Hydroxy-5β-pregnane-3,20-dione, formerly prepared by a hydroboration method, has been obtained in greatly improved yield by a simpler irradiation-hydrogenation procedure.     

An improved synthesis of α,β-unsaturated nitrones relevant to the stephacidins and analogs thereof

A new method is reported for the synthesis of the α,β-unsaturated nitrone moiety characteristic of the stephacidin/avrainvillamide family of bioactive prenylated indole alkaloids. Application to the synthesis of stephacidin analogs and a potential biological probe are showcased.     

An improved selection method for λlacZ − phages based on galactose sensitivity

The determination of thelacZ mutant frequency in gt10lacZ phage vectors isolated from the transgenic mouse strain 40.6 (MutaMouse), requires the screening of large numbers of phages on -galactosidase activity. Existing methods rely on distinguishing a few white plaques on X-gal containing plates amongst a multide of blue ones which is both time-consuming and expensive. The new screening method described here employs the galactose sensitiveEscherichia coli C lacZ recA galE strain into which a multicopy plasmid has been introduced, which results in over-expression of thegalK andgalT genes. In the presence of phenyl--d-galactopyranoside, a substrate for -galactosidase, this leads to the suppression of lacZ ⁺ phage propagation without affecting the ability of lacZ ^– phages to form plaques. With this method it is possible to screen 1.5×10⁶ phages on a single 9-cm Petri dish. Furthermore, the need for blue/white screening has been eliminated.     

An improved technique for measuring assimilation efficiency by the 51Cr−14C twin tracer method

Summary Calow and Fletcher have shown that assimilation efficiency can be calculated from the ratios of an assimilated radiotracer (e.g. ¹⁴C) and a non-assimilated tracer (e.g. ⁵¹Cr) in the food and faeces of freshwater pulmonates [Oecologia (Berl.) 9, 155–170 (1972)]. It is suggested that their counting methods have limitations and are not wholly suitable for wide biological application. An alternative technique was tested using third instar larvae of a Kenyan cetoniid, Pachnoda ephippiata (Gerst.) (Coleoptera, Scarabaeidae), fed on an artificial food medium labelled with ¹⁴C-glucose and ⁵¹CrCl₃. The activity of both tracers in food and faeces was estimated from simultaneous counts of the emissions recorded by a liquid scintillation spectrometer. The scintillant solution, toluene—Triton X-100—PPO, extracted virtually all of the labelled tracers from 0.2 g samples of the agar-cellulose-water food medium. The calculated assimilation efficiency values for glucose increased from 50.2% to 78.6% over the 6 days following exposure to the labelled food. 90.8% of the total ⁵¹Cr recovered was egested during these 6 days, 76.8% during the first 3. An ecologically more meaningful estimate of assimilation efficiency was calculated by integrating the ¹⁴C and ⁵¹Cr counts over the 15 days that faeces were collected. The applications of this approach to measuring assimilation efficiency are wide. They include the possibility of measuring how much excreta are produced from a given amount of Ingesta and of determining the role of gut-microorganisms in the assimilation of their host's food.     

An improved method for the syntheses of p-aminophenyl 1-thio-β-d-glycosides

The condensation of the appropriate acetylglycosyl bromides with p-amino-benzenethiol in the presence of sodium methoxide afforded p-aminophenyl 1-thio-β-d-glucopyranoside, 1-thio-β-d-galactopyranoside, 1-thio-β-d-xylopyranoside, and 2-acetamido-2-deoxy-1-thio-β-d-glucopyranoside. p-Aminophenyl 1-thio-β-d-glucopyranosiduronic acid was synthesized by condensation of methyl (2,3,4-tri-o-acetyl-β-d-glucopyranosyl bromide)uronate with p-aminobenzenethiol, followed by saponification with sodium hydroxide.     

An air-lift biofilm reactor for the production of γ-decalactones by Yarrowia lipolytica

Decalactones are interesting flavouring compounds that can be produced from ricinoleic acid. In this study, the production of lactones in biofilms using Yarrowia lipolytica is investigated. The hydrophobia of cells increased for increased aeration rates resulting in higher adhesion when the reactor wall was hydrophobic (plastic). To increase adhesion, sheets of methyl-polymethacrylate (PMMA) were added in the reactor and the production of lactones increased with the surface of plastic added, reaching 850 mg/L of 3-hydroxy-γ-decalactone for 60 cm². In an Airlift bioreactor made of PMMA, biofilms were present at the top of the reactor for increased aeration. In the meantime, a metabolic shift occurred resulting in high amounts of 3-hydroxy-γ-decalactone. At 0.493 vvm and 61 h of culture, the dissolved oxygen ratio was of 28.6% and cells grew to only 1.29 × 10⁶ cells/mL in the liquid medium but 3-hydroxy-γ-decalactone accumulated to 1.7 g/L instead of less than 0.3 mg/L for lower aeration. Adhering cells had a particular elongated shape intermediate between the yeast and the pseudofilamentous forms. It is concluded that adhering Y. lipolytica cells are in a specific physiological state changing their structure but also their metabolic properties and these properties make them good candidate for simple immobilisation process.     

An ultrasensitive colorimetric method for the assay of endo-1,4-β-D-glucanase

Summary A colorimetric method for the assay of endo-1,4--D-glucanase from fungal cellulolytic systems which utilizes xyloglucan as substrate is described. The substrate forms a blue-green complex with I₂ which is lost upon its breakdown with the enzyme. The new assay is a simple one-step procedure and its sensitivity is comparable with that of viscometry.     

Co-suppression of synthesis of major α-kafirin sub-class together with γ-kafirin-1 and γ-kafirin-2 required for substantially improved protein digestibility in transgenic sorghum

Key message

Co-suppressing major kafirin sub-classes is fundamental to improved protein digestibility and nutritional value of sorghum. The improvement is linked to an irregularly invaginated phenotype of protein bodies.

Abstract

The combined suppression of only two genes, γ kafirin-1 (25 kDa) and γ-kafirin-2 (50 kDa), significantly increases sorghum kafirin in vitro digestibility. Co-suppression of a third gene, α-kafirin A1 (25 kDa), in addition to the two genes increases the digestibility further. The high-digestibility trait has previously only been obtained either through the co-suppression of six kafirin genes (α-A1, 25 kDa; α-B1, 19 kDa; α-B2, 22 kDa; γ-kaf1, 27 kDa; γ-kaf 2, 50 kDa; and δ-kaf 2, 18 kDa) or through random chemical-induced mutations (for example, the high protein digestibility mutant). We present further evidence that suppressing just three of these genes alters kafirin protein cross-linking and protein body microstructure to an irregularly invaginated phenotype. The irregular invaginations are consistent with high pepsin enzyme accessibility and hence high digestibility. The approach we adopted towards increasing sorghum protein digestibility appears to be an effective tool in improving the status of sorghum as a principal supplier of energy and protein in poor communities residing in marginal agro-ecological zones of Africa.     

An efficient method for the selective synthesis of 2-deoxy-2-iodo-glycosides by O-glycosidation of D-glucal using I₂-Cu(OAc)₂

An efficient and convenient method for the synthesis of 2-deoxy-2-iodo-O-glycosides from tri-O-acetyl-d-glucal with various alcohols by using I₂-Cu(OAc)₂ is described. The 21 examples of corresponding glycosides were obtained in high yields, with good anomeric selectivity.     

An efficient and expedient method for the synthesis of 11C-labeled α-aminoisobutyric acid: a tumor imaging agent potentially useful for cancer diagnosis

We describe the synthesis of ¹¹C-labeled α-aminoisobutyric acid 2 from iodo[¹¹C]methane and methyl N-(diphenylmethylen)-d,l-alaniate (5). The tetrabutylammonium fluoride (TBAF)-promoted α-[¹¹C]methylation of sterically hindered analog 5 was a key step in our synthesis process. Total radiochemical conversion of 2 was high and a remote-controlled synthesis was carried out. A comparative tumor positron emission tomography (PET) imaging study using the same model mouse showed higher uptake of 2 than with ¹¹C-labeled methionine and [¹⁸F] fluorodeoxyglucose (FDG).     

Regioselectivity-driven evolution of CYP102D1 for improved synthesis of 3′-ortho-dihydroxyisoflavone

Daidzein is a major component of isoflavones, and its hydroxylated forms are valuable phytochemicals with anti-cancer and anti-oxidant activity. Due to the limitations of chemical synthesis of these hydroxylated structures, alternative enzymatic synthesis has been attempted. Previously, several protein-engineering approaches using CYP102D1 were investigated; these produced mutants with daidzein hydroxylation activity and regioselectivity through rational design (F96V/M246I) and saturation mutagenesis (A273H/G274E/T277G). However, the generated mutants have low regioselectivity (F96V/M246I) or low hydroxylation activity (A273H/G274E/T277G). Here, we characterized mutants capable of catalyzing C3′-specific daidzein hydroxylation with enhanced hydroxylation activity and regioselectivity. In order to obtain regioselectivity toward the daidzein C3′-position, site-saturation mutagenesis on the substrate-binding region of CYP102D1 F96V/M246I was investigated. A high-throughput screening assay was then performed, based on O-dealkylation activity against the daidzein analog substrate 4′-O-methyl-daidzein. This resulted in a mutant with more than 23-fold improved hydroxylation activity (55.6 ± 17.9 μM⁻¹ min⁻¹, or 48.4 mg/L titer) and regioselectivity over the 3′/6-position that was increased by three-fold (from 0.9 to 2.6) compared with the F96V/M246I template enzyme. Furthermore, we carried out docking simulation studies that could partially explain the effects of these mutations on C3′-specific hydroxylation activity.     

A novel convergent method for the synthesis of α-acyl-γ-hydroxylactams and its application in the total synthesis of PI-090 and 091

A novel convergent method for the synthesis of α-acyl-γ-hydroxylactams utilizing the aldol reaction of N-Boc-protected γ-methoxylactams was developed. As the first application of this method for the synthesis of biologically active natural products, the total synthesis of platelet aggregation inhibitors PI-090 and PI-091 were also investigated and successfully achieved.