Did farming arise from a misapplication of social intelligence?

The origins of farming is the defining event of human history--the one turning point that has resulted in modern humans having a quite different type of lifestyle and cognition to all other animals and past types of humans. With the economic basis provided by farming, human individuals and societies have developed types of material culture that greatly augment powers of memory and computation, extending the human mental capacity far beyond that which the brain alone can provide. Archaeologists have long debated and discussed why people began living in settled communities and became dependent on cultivated plants and animals, which soon evolved into domesticated forms. One of the most intriguing explanations was proposed more than 20 years ago not by an archaeologist but by a psychologist: Nicholas Humphrey suggested that farming arose from the 'misapplication of social intelligence'. I explore this idea in relation to recent discoveries and archaeological interpretations in the Near East, arguing that social intelligence has indeed played a key role in the origin of farming and hence the emergence of the modern world.     

Commentary

ABSTRACT

The modern deer farming industry can be traced back through the centuries at least to Roman and Greek times. Archaeological evidence from China and Europe suggests that deer of several species may have been partially domesticated or at least habituated to humans many centuries before that, including during the Mesolithic. The techniques described by Aristotle and Roman authors are used today by deer farmers in many countries. The farming of wapiti in North America was first described in 1877, and seriously considered by the U.S. Biological Survey in 1908. As of February 1993 deer farming was being carried out in 21 countries.     

Molecular Characterization of Giardia Isolates from Calves and Humans in a Region in Which Dairy Farming Has Recently Intensified

Giardiasis is a notifiable disease of high prevalence in New Zealand, but there is limited knowledge about the sources of Giardia duodenalis genotypes that can potentially cause human infections. Dairy calves are one environmental source of Giardia isolates, but it is unknown whether they harbor genotypes that are potentially capable of causing infections in humans. To address these questions, 40 Giardia isolates from calves and 30 from humans, living in the same region and collected over a similar period, were genotyped using the β-giardin gene. The G. duodenalis genetic assemblages A and B were identified from both calves and humans, and genotype comparisons revealed a substantial overlap of identical genotypes from the two hosts for both assemblages. Significantly, no assemblage E (the genotype commonly found in cattle elsewhere in the world) has been detected in New Zealand livestock to date. Given recent and rapid land use conversions to dairy farming in many South Island regions of New Zealand, an increasingly large concentration of domestic cattle harboring genotypes potentially capable of causing infections in humans is particularly concerning.     

A longitudinal study of environmental mycobacteria on a farm in south-west England

Soil, stream beds and cattle drinking troughs were sampled every 3 months over 3 years. More than 750 putative mycobacteria were isolated and grouped into more than 50 biotypes pending full identification. Samples from woodland and farmed land yielded fewer isolates per site compared with other terrains ( P < 0.05). Some seasonal effects were noted but the greatest difference was between years 1 and 3. This appeared not to be due to differences in temperature, rainfall or experimental procedure, but coincided with the introduction of organic farming practices. In year 3 there was a significant increase in nitrate-reducing slow growers, both pigmented ( P ≤ 0.006) and non-pigmented strains ( P ≤ 0.002), and a shift in biotypes was noted. In contrast, all fast growers declined with time, as did those slow growers unable to reduce nitrate. Changing farming practice may alter the profile of environmental mycobacteria, which has important implications for the immunological priming of humans and animals.     

Conservation that’s more than skin-deep: alligator farming

Wildlife farming is a contentious conservation measure. In Louisiana alligator farming has generated significant conservation gains. This case study is used to test several assumptions employed in debates about wildlife farming. These include whether farming ‘floods’ the market to depress prices and deter poaching, whether it encourages wild harvest and whether it can compete against wild harvest. Data from over three decades is used to model harvest behaviour with OLS and SUR models. This shows strong separation between the market between farmed and wild alligator skins. Immense rises in farmed output have not caused prices to collapse, however poaching has collapsed. This highlights that farming can have important non-price effects on poaching. Assumptions that are commonly used to debate wildlife farming are not supported in this example. Such assumptions, including open-access of the wildlife, inert and exogenous wildlife managers and excluding indirect benefits of wildlife farming tend to bias policy away from farming. Using these assumptions makes it harder to identify cases where wildlife farming could assist conservation objectives.     

Holocene vegetation and land-use history in the environs of Lake Kahala, northern Estonia

Pollen profiles, based cores taken in Lake Kahala and from the adjoining mire, were used to establish general vegetation history and to reconstruct the extent and types of land-use over most of the Holocene. Modern pollen deposition was studied using moss polsters and the results were used in the interpretation of the fossil pollen data in terms of former land-use practices. The modern-day samples are from settlements, hay meadow and pasture, and overgrown pasture. Indications of human activity can be traced back to the Stone Age. At ca. 6400 cal. B.C., the first indications of possible woodland utilisation by humans are recorded. This may have involved grazing within the forests. From 4200 cal. B.C. onwards, animal husbandry with changing intensity was practised. Arable farming, involving cereals, was introduced to the area at ca. 1800 cal. B.C., but it was only at ca. 500 cal. B.C. that it assumed an important role in the farming economy.Secale cereale (rye) was introduced during the Roman Iron Age, intensive rye cultivation started at the end of the Iron Age, at ca. cal. A.D. 800. Ever increasing farming pressures triggered the formation of openalvars. Open landscape similar to that of today has persisted, with minor forest regeneration phases, since at least 500 cal. B.C.     

Human–animal relationship influences husbandry practices,animal welfare and productivity in pig farming

The nature of the relationship between humans and farm animals has multiple repercussions on the animals and the farmers and varies with farmers attitudes towards their animals. In particular, this relationship influences animal welfare and human working conditions. The present study, part of a larger research project investigating human–animal relationship (HAR) in pig farming and ways to improve it, had two objectives: 1) to investigate the HAR in a diversity of pig farming situations and to evaluate the possible correlation between farmer attitudes, pigs' reactions to humans, husbandry practices, animal health, welfare and productivity and 2) to find a way to rapidly assign a farmer to a profile, in order to better adapt course content during training sessions on HAR. The study focused on 52 farrow-to-finish farms and consisted of a semi-structured interview with the farmer, observations of the farmer in contact with his/her livestock, two human approach tests conducted on sows and growers and productivity data. Finally, a questionnaire was left at the farm to be filled out by all stockpersons on the farm. Interviews, analyzed using a thematic analysis followed by multiple correspondence analysis and ascendant hierarchical clustering, showed that some farmers develop husbandry practices to improve their HARs and identified three farmer profiles that have been named in relation to the place of the HAR in their profession: Profile 1 farmers for whom HAR is secondary in their work with their pigs, Profile 2 for whom the HAR is useful in their work with their pigs and Profile 3 for whom HAR is central in their work with their pigs. Logistic regression models of the relationships between behavioral tests and productivity data showed that confident sows produce and wean more piglets than fearful sows and that sows of Profile 3 farmers trust more humans than those of Profile 1 or 2 farmers. Farmers' responses to the questionnaire did not predict their profile assignment. Our results confirm the main role of the farmer's attitude towards animals on their farming practices, animal welfare and productivity. The farmers who have more confident pigs and better productivity are those for whom the farm animal is central to their profession, express the most pleasure in working with them and convey empathy for them.     

The medical and veterinary role of Ornithodoros erraticus complex ticks (Acari: Ixodida) on the Iberian Peninsula

Argasid ticks of the Ornithodoros erraticus complex are associated with traditional pig‐farming practices on the Iberian Peninsula and are also found elsewhere in North Africa, West Africa, and western Asia. The ticks associated with pig farming on the Iberian Peninsula are the only biological vectors of African swine fever virus (ASFV) known to occur in Europe, and their ecology makes them an extremely effective reservoir of both ASFV and the Borrelia species which cause tick‐borne relapsing fever (TBRF) in humans. The recent reappearance of ASFV in the European Union, coupled with evidence that Portuguese tick populations continue to harbor Borrelia despite a lack of confirmed human infections, suggest that these populations merit closer attention. In Portugal, a series of surveys over the last twenty‐five years indicates that the number of farm sites with tick infestations has declined and suggest that populations are sensitive to changes in farm management, particularly the use of modern pig housing. Various technologies have been suggested for the control of farm‐associated Ornithodoros ticks and related species but, in our opinion, farm management changes are still the most effective strategy for population control. Furthermore, we suggest that this species could probably be eradicated from Iberian pig farms.     

The evolution of plant cultivation by ants

Outside humans, true agriculture was previously thought to be restricted to social insects farming fungus. However, obligate farming of plants by ants was recently discovered in Fiji, prompting a re-examination of plant cultivation by ants. Here, we generate a database of plant cultivation by ants, identify three main types, and show that these interactions evolved primarily for shelter rather than food. We find that plant cultivation evolved at least 65 times independently for crops (~200 plant species), and 15 times in farmer lineages (~37 ant taxa) in the Neotropics and Asia/Australasia. Because of their high evolutionary replication, and variation in partner dependence, these systems are powerful models to unveil the steps in the evolution and ecology of insect agriculture.     

Can carbon credits fund riparian forest restoration?

Ecological restoration is increasingly called on to provide ecosystem services (ES) valuable to humans, as well as to benefit biodiversity and improve wildlife habitat. Where mechanisms to pay for ES exist, they may serve as incentives to embark on habitat restoration projects. We evaluated the potential of newly established carbon markets in the United States to incentivize afforestation along riparian corridors, by comparing the income earnable by carbon offset credits with the costs of planting, maintaining, and registering such a restoration project in California. We used a 20‐year chronosequence of riparian forest sites along the Sacramento River as our model project. We found that carbon credits can repay more than 100% of costs after two decades of regrowth, if sufficient effort is put into sampling intensity in the first post‐restoration decade. However, carbon credits alone are unlikely to entice landowners currently engaged in agricultural activities to switch from farming crops to farming habitat.     

Farm Animal Production: Changing Agriculture in a Changing Culture

Western attitudes toward animals have undergone a gradual evolution during recent centuries, driven by the scientific recognition that humans and many other species share a common anatomical template, a common phylogenetic ancestry, and certain similarities in their social and emotional lives. This evolving view has been accompanied by a heightened popular respect for animals, which has caused increasing opposition to the relatively utilitarian treatment of animals in modern farming. Western culture also tends to venerate the pastoralist image of humans caring diligently for animals, and North Americans tend to venerate the agrarian life-style of farm families living in harmony with domestic animals and the land. These positive images, which have traditionally lent legitimacy to animal agriculture, have been diminished by changes in production methods during recent decades. The resulting debate between critics and defenders of modern animal production has led to widespread confusion and concern about how animal agriculture affects animal welfare, human health, the environment, and world food security. To resolve this situation will require research to create an accurate understanding of the diverse effects of modern animal agriculture, together with measures to harmonize agricultural practices with changing public values.     

Macro-Process of Past Plant Subsistence from the Upper Paleolithic to Middle Neolithic in China: A Quantitative Analysis of Multi-Archaeobotanical Data

Detailed studies of the long-term development of plant use strategies indicate that plant subsistence patterns have noticeably changed since the Upper Paleolithic, when humans underwent a transitional process from foraging to agriculture. This transition was best recorded in west Asia; however, information about how plant subsistence changed during this transition remains limited in China. This lack of information is mainly due to a limited availability of sufficiently large, quantified archaeobotanical datasets and a paucity of related synthetic analyses. Here, we present a compilation of extensive archaeobotanical data derived from interdisciplinary approaches, and use quantitative analysis methods to reconstruct past plant use from the Upper Paleolithic to Middle Neolithic in China. Our results show that intentional exploitation for certain targeted plants, particularly grass seeds, may be traced back to about 30,000 years ago during the Upper Paleolithic. Subsequently, the gathering of wild plants dominated the subsistence system; however, this practice gradually diminished in dominance until about 6~5 ka cal BP during the Middle Neolithic. At this point, farming based on the domestication of cereals became the major subsistence practice. Interestingly, differences in plant use strategies were detected between north and south China, with respect to (1) the proportion of certain plant taxa in assemblages, (2) the domestication rate of cereals, and (3) the type of plant subsistence practiced after the establishment of full farming. In conclusion, the transition from foraging to rice and millet agriculture in China was a slow and long-term process spanning 10s of 1000s of years, which may be analogous to the developmental paths of wheat and barley farming in west Asia.     

Organic farming improves pollination success in strawberries

Pollination of insect pollinated crops has been found to be correlated to pollinator abundance and diversity. Since organic farming has the potential to mitigate negative effects of agricultural intensification on biodiversity, it may also benefit crop pollination, but direct evidence of this is scant. We evaluated the effect of organic farming on pollination of strawberry plants focusing on (1) if pollination success was higher on organic farms compared to conventional farms, and (2) if there was a time lag from conversion to organic farming until an effect was manifested. We found that pollination success and the proportion of fully pollinated berries were higher on organic compared to conventional farms and this difference was already evident 2-4 years after conversion to organic farming. Our results suggest that conversion to organic farming may rapidly increase pollination success and hence benefit the ecosystem service of crop pollination regarding both yield quantity and quality.     

Edible insects in China: Utilization and prospects

The use of edible insects has a long history in China, where they have been consumed for more than 2000 years. In general, the level of acceptance is high for the consumption of insects in China. Many studies on edible insects have been conducted in the last 20 years, and the scope of the research includes the culture of entomophagy and the identification, nutritional value, farming and breeding of edible insects, in addition to food production and safety. Currently, 324 species of insects from 11 orders are documented that are either edible or associated with entomophagy in China, which include the common edible species, some less commonly consumed species and some medicinal insects. However, only approximately 10 to 20 types of insects are regularly consumed. The nutritional values for 174 species are available in China, including edible, feed and medicinal species. Although the nutritional values vary among species, all the insects examined contain protein, fat, vitamins and minerals at levels that meet human nutritional requirements. Edible insects were, and continue to be, consumed by different ethnic groups in many parts of China. People directly consume insects or food products made from insects. The processing of products from insect protein powder, oil and chitin, and the development of healthcare foods has been studied in China. People also consume insects indirectly by eating livestock that were fed insects, which may be a more acceptable pathway to use insects in human diets. Although limited, the data on the food safety of insects indicate that insects are safe for food or feed. Incidences of allergic reactions after consuming silkworm pupae, cicadas and crickets have been reported in China. Insect farming is a unique breeding industry in rural China and is a source of income for local people. Insects are reared and bred for human food, medicine and animal feed using two approaches in China: the insects are either fully domesticated and reared completely in captivity or are partially raised in captivity, and the insect habitat is manipulated to increase production. Depending on the type of relationship the insect has with humans, plants and the environment, different farming strategies are used. The social and scientific communities must work together to promote the use of insects as food and feed.     

Decreased functional diversity and biological pest control in conventional compared to organic crop fields

Organic farming is one of the most successful agri-environmental schemes, as humans benefit from high quality food, farmers from higher prices for their products and it often successfully protects biodiversity. However there is little knowledge if organic farming also increases ecosystem services like pest control. We assessed 30 triticale fields (15 organic vs. 15 conventional) and recorded vascular plants, pollinators, aphids and their predators. Further, five conventional fields which were treated with insecticides were compared with 10 non-treated conventional fields. Organic fields had five times higher plant species richness and about twenty times higher pollinator species richness compared to conventional fields. Abundance of pollinators was even more than one-hundred times higher on organic fields. In contrast, the abundance of cereal aphids was five times lower in organic fields, while predator abundances were three times higher and predator-prey ratios twenty times higher in organic fields, indicating a significantly higher potential for biological pest control in organic fields. Insecticide treatment in conventional fields had only a short-term effect on aphid densities while later in the season aphid abundances were even higher and predator abundances lower in treated compared to untreated conventional fields. Our data indicate that insecticide treatment kept aphid predators at low abundances throughout the season, thereby significantly reducing top-down control of aphid populations. Plant and pollinator species richness as well as predator abundances and predator-prey ratios were higher at field edges compared to field centres, highlighting the importance of field edges for ecosystem services. In conclusion organic farming increases biodiversity, including important functional groups like plants, pollinators and predators which enhance natural pest control. Preventative insecticide application in conventional fields has only short-term effects on aphid densities but long-term negative effects on biological pest control. Therefore conventional farmers should restrict insecticide applications to situations where thresholds for pest densities are reached.     

Intensive Farming: Evolutionary Implications for Parasites and Pathogens

An increasing number of scientists have recently raised concerns about the threat posed by human intervention on the evolution of parasites and disease agents. New parasites (including pathogens) keep emerging and parasites which previously were considered to be 'under control' are re-emerging, sometimes in highly virulent forms. This re-emergence may be parasite evolution, driven by human activity, including ecological changes related to modern agricultural practices. Intensive farming creates conditions for parasite growth and transmission drastically different from what parasites experience in wild host populations and may therefore alter selection on various traits, such as life-history traits and virulence. Although recent epidemic outbreaks highlight the risks associated with intensive farming practices, most work has focused on reducing the short-term economic losses imposed by parasites, such as application of chemotherapy. Most of the research on parasite evolution has been conducted using laboratory model systems, often unrelated to economically important systems. Here, we review the possible evolutionary consequences of intensive farming by relating current knowledge of the evolution of parasite life-history and virulence with specific conditions experienced by parasites on farms. We show that intensive farming practices are likely to select for fast-growing, early-transmitted, and hence probably more virulent parasites. As an illustration, we consider the case of the fish farming industry, a branch of intensive farming which has dramatically expanded recently and present evidence that supports the idea that intensive farming conditions increase parasite virulence. We suggest that more studies should focus on the impact of intensive farming on parasite evolution in order to build currently lacking, but necessary bridges between academia and decision-makers.     

The origin of human pathogens: evaluating the role of agriculture and domestic animals in the evolution of human disease

Many significant diseases of human civilization are thought to have arisen concurrently with the advent of agriculture in human society. It has been hypothesised that the food produced by farming increased population sizes to allow the maintenance of virulent pathogens, i.e. civilization pathogens, while domestic animals provided sources of disease to humans. To determine the relationship between pathogens in humans and domestic animals, I examined phylogenetic data for several human pathogens that are commonly evolutionarily linked to domestic animals: measles, pertussis, smallpox, tuberculosis, taenid worms, and falciparal malaria. The majority are civilization pathogens, although I have included others whose evolutionary origins have traditionally been ascribed to domestic animals. The strongest evidence for a domestic-animal origin exists for measles and pertussis, although the data do not exclude a non-domestic origin. As for the other pathogens, the evidence currently available makes it difficult to determine if the domestic-origin hypothesis is supported or refuted; in fact, intriguing data for tuberculosis and taenid worms suggests that transmission may occur as easily from humans to domestic animals. These findings do not abrogate the importance of agriculture in disease transmission; rather, if anything, they suggest an alternative, more complex series of effects than previously elucidated. Rather than domestication, the broader force for human pathogen evolution could be ecological change, namely anthropogenic modification of the environment. This is supported by evidence that many current emerging infectious diseases are associated with human modification of the environment. Agriculture may have changed the transmission ecology of pre-existing human pathogens, increased the success of pre-existing pathogen vectors, resulted in novel interactions between humans and wildlife, and, through the domestication of animals, provided a stable conduit for human infection by wildlife diseases.     

A Metapopulation Model to Assess the Capacity of Spread of Meticillin-Resistant Staphylococcus aureus ST398 in Humans

The emergence of the livestock-associated clone of meticillin-resistant Staphylococcus aureus (MRSA) ST398 is a serious public health issue throughout Europe. In The Netherlands a stringent ‘search-and-destroy’ policy has been adopted, keeping low the level of MRSA prevalence. However, reports have recently emerged of transmission events between humans showing no links to livestock, contradicting belief that MRSA ST398 is poorly transmissible in humans. The question regarding the transmissibility of MRSA ST398 in humans therefore remains of great interest. Here, we investigated the capacity of MRSA ST398 to spread into an entirely susceptible human population subject to the effect of a single MRSA-positive commercial pig farm. Using a stochastic, discrete-time metapopulation model, we explored the effect of varying both the probability of persistent carriage and that of acquiring MRSA due to contact with pigs on the transmission dynamics of MRSA ST398 in humans. In particular, we assessed the value and key determinants of the basic reproduction ratio (R ₀) for MRSA ST398. Simulations showed that the presence of recurrent exposures with pigs in risky populations allows MRSA ST398 to persist in the metapopulation and transmission events to occur beyond the farming community, even when the probability of persistent carriage is low. We further showed that persistent carriage should occur in less than 10% of the time for MRSA ST398 to conserve epidemiological characteristics similar to what has been previously reported. These results indicate that implementing control policy that only targets human carriers may not be sufficient to control MRSA ST398 in the community if it remains in pigs. We argue that farm-level control measures should be implemented if an eradication programme is to be considered.     

Biotechnology in agriculture: a worldwide upheaval

Without food, mankind has little use for medicine or industry. Agriculture, the oldest biotechnology, is therefore also the most fundamental to our well-being. The application of modern methods of biotechnology represents just the latest step in the march of technology in agriculture. But it coincides with a growing public awareness of the disadvantages that have accompanied previous progress — the environmental, economic and ethical problems that result from intensive farming in developed countries. There is a growing scientific awareness that biotechnology has applications in farming in the developing countries. In the next few pages, Allen Dines' snapshot of public feeling in the US and Joske Bunders' appraisal of appropriate agricultural biotechnology form a résumé of the changing climate in farming.     

Whole-genome sequencing and gene sharing network analysis powered by machine learning identifies antibiotic resistance sharing between animals,humans and environment in livestock farming

Anthropogenic environments such as those created by intensive farming of livestock, have been proposed to provide ideal selection pressure for the emergence of antimicrobial-resistant Escherichia coli bacteria and antimicrobial resistance genes (ARGs) and spread to humans. Here, we performed a longitudinal study in a large-scale commercial poultry farm in China, collecting E. coli isolates from both farm and slaughterhouse; targeting animals, carcasses, workers and their households and environment. By using whole-genome phylogenetic analysis and network analysis based on single nucleotide polymorphisms (SNPs), we found highly interrelated non-pathogenic and pathogenic E. coli strains with phylogenetic intermixing, and a high prevalence of shared multidrug resistance profiles amongst livestock, human and environment. Through an original data processing pipeline which combines omics, machine learning, gene sharing network and mobile genetic elements analysis, we investigated the resistance to 26 different antimicrobials and identified 361 genes associated to antimicrobial resistance (AMR) phenotypes; 58 of these were known AMR-associated genes and 35 were associated to multidrug resistance. We uncovered an extensive network of genes, correlated to AMR phenotypes, shared among livestock, humans, farm and slaughterhouse environments. We also found several human, livestock and environmental isolates sharing closely related mobile genetic elements carrying ARGs across host species and environments. In a scenario where no consensus exists on how antibiotic use in the livestock may affect antibiotic resistance in the human population, our findings provide novel insights into the broader epidemiology of antimicrobial resistance in livestock farming. Moreover, our original data analysis method has the potential to uncover AMR transmission pathways when applied to the study of other pathogens active in other anthropogenic environments characterised by complex interconnections between host species.