茄科马尿泡和天仙子的花器官发生

利用扫描电镜研究了茄科 (Solanaceae)天仙子族 (Hyoscyameae)中国特有属马尿泡属 (PrzewalskiaMaxim .)马尿泡 (PrzewalskiatanguticaMaxim .)和天仙子属 (HyoscyamusL .)天仙子 (HyoscyamusnigerL .)的花器官发生和发育 ,研究结果表明 :马尿泡和天仙子花器官的发生和发育具有以下 3个共同特征 :1)符合Hofmeister规律 ,即新器官的发生首先出现在花顶已经存在的器官之间 ;2 )花冠的发育模式符合茄科植物所具有的“后合瓣”(“latesympetaly”)现象 ,即花瓣单独发生但后来又通过它们基部分生组织的融合而连合起来 ;3)花被五基数且花器官原基发生顺序为向心发育。但是它们的花萼原基具有不同的发生方式。天仙子花萼裂片原基的发生方式为环状发生 ;马尿泡花萼裂片原基的发生方式为螺旋状发生 ,但 5个花萼裂片原基在都出现后就连成了一个环。马尿泡是介于天仙子属和山莨菪属之间的类群 ,它比天仙子属原始但较山莨菪属进化。     

茄科马尿泡和天仙子的花器官发生

利用扫描电镜研究了茄科(Solanaceae)天仙子族(Hyoscyameae)中国特有属马尿泡属( Przewalskia Maxim.)马尿泡( Przewalskia tangutica Maxim.)和天仙子属( Hyoscyamus L.)天仙子( Hyoscyamus niger L.)的花器官发生和发育,研究结果表明:马尿泡和天仙子花器官的发生和发育具有以下3个共同特征:1)符合Hofmeister规律, 即新器官的发生首先出现在花顶已经存在的器官之间;2)花冠的发育模式符合茄科植物所具有的"后合瓣"("late sympetaly")现象,即花瓣单独发生但后来又通过它们基部分生组织的融合而连合起来;3)花被五基数且花器官原基发生顺序为向心发育.但是它们的花萼原基具有不同的发生方式.天仙子花萼裂片原基的发生方式为环状发生;马尿泡花萼裂片原基的发生方式为螺旋状发生,但5个花萼裂片原基在都出现后就连成了一个环.马尿泡是介于天仙子属和山莨菪属之间的类群,它比天仙子属原始但较山莨菪属进化.     

茄科天仙子族的叶表皮特征及其系统学意义

在光学显微镜和扫描电镜下,观察了茄科天仙子族７属２１种及其邻近类群２属３种共２４种植物的叶表皮特征。结果表明：气孔器在各种植物的上、下表皮均有分布,多为无规则型,也有不等细胞型;叶表皮细胞形状有不同规则形、十字形、近长圆形和不规则多边形,垂周壁较平直、浅波状、波状或深波状。在扫描电镜下可见：叶表皮气孔器外拱盖内缘近平滑、浅波状或波状;角质膜多为具条纹,也有同时具条纹和颗粒或鳞片,偶尔仅具颗粒和鳞片     

The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships

Mungbean is an economically important crop which is grown principally for its protein-rich dry seeds. However, genomic research of mungbean has lagged behind other species in the Fabaceae family. Here, we reported the complete chloroplast (cp) genome sequence of mungbean obtained by the 454 pyrosequencing technology. The mungbean cp genome is 151 271 bp in length which includes a pair of inverted repeats (IRs) of 26 474 bp separated by a small single-copy region of 17 427 bp and a large single-copy region of 80 896 bp. The genome contains 108 unique genes and 19 of these genes are duplicated in the IR. Of these, 75 are predicted protein-coding genes, 4 ribosomal RNA genes and 29 tRNA genes. Relative to other plant cp genomes, we observed two distinct rearrangements: a 50-kb inversion between accD/rps16 and rbcL/trnK-UUU, and a 78-kb rearrangement between trnH/rpl14 and rps19/rps8. We detected sequence length polymorphism in the cp homopolymeric regions at the intra- and inter-specific levels in the Vigna species. Phylogenetic analysis demonstrated a close relationship between Vigna and Phaseolus in the phaseolinae subtribe and provided a strong support for a monophyletic group of the eurosid I.     

Molecular Phylogenetic Analysis of Petunia Juss. (Solanaceae)

Representatives from 11 Petunia Jussieu species in south and southeast Brazil were compared with two Calibrachoa La Llave & Lex., one Bouchetia Dunal, and two Nierembergia Ruiz & Pav. taxa in relation to DNA molecular variability. A total of 4532 base pairs related to one nuclear, five plastidial and one mitochondrial systems was investigated. Petunia and Calibrachoa, although separated among themselves, clearly differentiate from the two other genera. Despite the fact that the Petunia species do not show marked molecular differences, they can be separated in two complexes, in good agreement with altitude data. Petunia + Calibrachoa should have diverged from other clades at about 25 million years before present.     

165The Chloroplast Genome of the Toxic Stramenopile Heterosigma Akashiwo (Raphidophyceae)

Many temperate green macroalgae contain secondary meatbolites that provide protection from grazing by some herbivores. These include the production of dopamine hydrochloride by the ulvoid green alga Ulvaria obscura and the production of dimethylsulfoniopropionate (DMSP) by many species of Ulvales and Caulerpales. The dopamine hydrochloride defense was isolated using bioassay-guided fractionation and is effective against sea urchins ( Strongylocentrotus droebachiensis ) and littorinid snails ( Littorina sitkana ). The DMSP activated defense system involves enzymatic cleavage of DMSP into dimethyl sulfide (DMS) and acrylic acid. It is found in many of the Ulvales and several species of Codium in the northeastern Pacific and Australasian regions. Many green algae such as Ulva fenestrata and Enteromorpha linza are avoided by urchins, which are deterred by DMS and acrylic acid in laboratory assays. However, these algae are often preferred foods of snails, which are deterred by DMS and acrylic acid. Snails may preferentially consume ulvoid green algae, despite being deterred by DMS and acrylic acid, because these algae contain relatively high nitrogen concentrations.     

烟草叶绿体基因组和线粒体基因组SSR位点分析

利用生物信息学方法对烟草叶绿体和线粒体基因组数据中的SSR信息进行了分析.结果表明,在叶绿体和线粒体基因组中分别获得186和578个SSR位点,SSR间的平均距离分别为838 bp和745 bp.在SSR的分布区域上,绝大多数SSR位点分布在UTR(尤其是5’UTR)区域;在SSR重复碱基类型上,主要集中在二、三碱基重复,二者占总SSR位点的90％以上,其中三碱基重复类型丰度最高.利用全部657对SSR引物在供试的10份烟草材料中进行扩增,发现所有引物均能获得目的片段,但在普通烟草内品种间并未检测到多态性,而在烟草种间有26对叶绿体基因组SSR引物和178对线粒体基因组SSR引物扩增出多态性条带,表明来源于烟草叶绿体基因组和线粒体基因组的SSR标记适合用于烟草种间进化、分类、遗传多样性等方面研究.     

Genetic and physiological analysis of biennialism in Hyoscyamus niger

A genetic and physiological study of biennialism in the diploid selfer Hyoscyamus niger (black henbane), an obligate long-day plant, is described. Three annual and two biennial accessions that were homozygous for their respective growth habits were selected. The early-flowering trait of two annual accessions was dominant over the late-flowering trait of the third annual accession. The late-flowering annual accession, but not the early-flowering ones, responded to vernalization. Two biennial accessions remained vegetative after more than 1 year in soil and thus had an obligate vernalization requirement. Crosses between annual and biennial accessions showed that biennialism was conferred through a single dominant gene. However, plants containing only one copy of this dominant gene were transformed from biennials into very late-flowering winter-annual plants that responded more rapidly to vernalization than biennials. Taken together, these results indicated that there were allelic differences in photoperiod-specific flowering time genes and that biennialism was a dose-dependent trait with incomplete dominance. Models for flowering time regulation in henbane involving photoperiod-, vernalization-, and most likely gibberellin-specific pathways are discussed.     

Phylogenetic analysis of Petunia sensu Jussieu (Solanaceae) using chloroplast DNA RFLP

BACKGROUND AND AIMS: The phylogenetic relationships of Petunia sensu Jussieu (Petunia sensu Wijsman plus Calibrachoa) are unclear. This study aimed to resolve this uncertainty using molecular evidence. METHODS: Phylogenetic trees of 52 taxa of Petunia sensu Jussieu were constructed using restriction fragment length polymorphism (RFLP) of chloroplast DNA digested with 19 restriction enzymes and hybridized with 12 cloned Nicotiana chloroplast DNA fragments as probes. KEY RESULTS: In all, 89 phylogenetically informative RFLPs were detected and one 50 % majority consensus tree was obtained, using the maximum parsimony method, and one distance matrix tree, using the neighbour joining method. Petunia sensu Wijsman and Calibrachoa were monophyletic sister clades in both trees. Calibrachoa parviflora and C. pygmaea, previously thought to differ from the other species in terms of their cross-compatibility, seed morphology, and nuclear DNA content, formed a basal clade that was sister to the remainder of Calibrachoa. Several clades found in the phylogenetic trees corresponded to their distribution ranges, suggesting that recent speciation in the genus Petunia sensu Jussieu occurred independently in several different regions. CONCLUSIONS: The separation of Petunia sensu Wijsman and Calibrachoa was supported by chloroplast DNA analysis. Two groups in the Calibrachoa were also recognized with a high degree of confidence.     

Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants

Background

Artemisia frigida Willd. is an important Mongolian traditional medicinal plant with pharmacological functions of stanch and detumescence. However, there is little sequence and genomic information available for Artemisia frigida, which makes phylogenetic identification, evolutionary studies, and genetic improvement of its value very difficult. We report the complete chloroplast genome sequence of Artemisia frigida based on 454 pyrosequencing.

Methodology/Principal Findings

The complete chloroplast genome of Artemisia frigida is 151,076 bp including a large single copy (LSC) region of 82,740 bp, a small single copy (SSC) region of 18,394 bp and a pair of inverted repeats (IRs) of 24,971 bp. The genome contains 114 unique genes and 18 duplicated genes. The chloroplast genome of Artemisia frigida contains a small 3.4 kb inversion within a large 23 kb inversion in the LSC region, a unique feature in Asteraceae. The gene order in the SSC region of Artemisia frigida is inverted compared with the other 6 Asteraceae species with the chloroplast genomes sequenced. This inversion is likely caused by an intramolecular recombination event only occurred in Artemisia frigida. The existence of rich SSR loci in the Artemisia frigida chloroplast genome provides a rare opportunity to study population genetics of this Mongolian medicinal plant. Phylogenetic analysis demonstrates a sister relationship between Artemisia frigida and four other species in Asteraceae, including Ageratina adenophora, Helianthus annuus, Guizotia abyssinica and Lactuca sativa, based on 61 protein-coding sequences. Furthermore, Artemisia frigida was placed in the tribe Anthemideae in the subfamily Asteroideae (Asteraceae) based on ndhF and trnL-F sequence comparisons.

Conclusion

The chloroplast genome sequence of Artemisia frigida was assembled and analyzed in this study, representing the first plastid genome sequenced in the Anthemideae tribe. This complete chloroplast genome sequence will be useful for molecular ecology and molecular phylogeny studies within Artemisia species and also within the Asteraceae family.     

Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions

For Nicotiana, with 75 naturally occurring species (40 diploids and 35 allopolyploids), we produced 4656bp of plastid DNA sequence for 87 accessions and various outgroups. The loci sequenced were trnL intron and trnL-F spacer, trnS-G spacer and two genes, ndhF and matK. Parsimony and Bayesian analyses yielded identical relationships for the diploids, and these are consistent with other data, producing the best-supported phylogenetic assessment currently available for the genus. For the allopolyploids, the line of maternal inheritance is traced via the plastid tree. Nicotiana and the Australian endemic tribe Anthocercideae form a sister pair. Symonanthus is sister to the rest of Anthocercideae. Nicotiana sect. Tomentosae is sister to the rest of the genus. The maternal parent of the allopolyploid species of N. sect. Polydicliae were ancestors of the same species, but the allopolyploids were produced at different times, thus making such sections paraphyletic to their extant diploid relatives. Nicotiana is likely to have evolved in southern South America east of the Andes and later dispersed to Africa, Australia, and southwestern North America.     

Organization and Alkaloid Production in Tissue Cultures of Hyoscyamus niger

Callus and cell suspension cultures were established from Hyoscyamusniger seedlings and their growth requirements investigated.Stock suspensions were more aggregated in the earlier passagesbut became finer as the cultures were serially sub-cultured.On transfer to auxin-free medium, the cultures formed rootsand shoots were rarely noted. Callus initiated from differentparts of the seedlings showed no differences in alkaloid levels.Alkaloid contents were slightly increased on transfer to auxin-freemedium. Both alkaloid content and composition changed duringserial propagation. Different parts of the intact plant werealso analysed for alkaloids.     

A transient accumulation of poly(A)-containing RNA in the tapetum of Hyoscyamus niger during microsporogenesis

The distribution of poly(A)-containing RNA in the tapetal cells of Hyoscyamus niger during microsporogenesis was followed by in situ hybridization with [³H]poly(U) as a probe. Although no poly(A)-containing RNA accumulated in the premeiotic tapetum, [³H]poly(U) binding sites were detected in the tapetum as meiosis was completed in the microsporocytes. Accumulation of poly(A)-containing RNA in the tapetal cells reached a peak before the first haploid mitosis in the pollen grains. With the onset of tapetal senescence at the late uninucleate stage of the pollen grain, [³H]poly(U) binding sites gradually decreased and they completely disappeared in the tapetum at the binucleate pollen stage. The significance of the results is discussed, particularly with regard to the possible role of tapetum in the synthesis of informational macromolecules during microsporogenesis.     

Complete Chloroplast Genome of the Wollemi Pine (Wollemia nobilis): Structure and Evolution

The Wollemi pine (Wollemia nobilis) is a rare Southern conifer with striking morphological similarity to fossil pines. A small population of W. nobilis was discovered in 1994 in a remote canyon system in the Wollemi National Park (near Sydney, Australia). This population contains fewer than 100 individuals and is critically endangered. Previous genetic studies of the Wollemi pine have investigated its evolutionary relationship with other pines in the family Araucariaceae, and have suggested that the Wollemi pine genome contains little or no variation. However, these studies were performed prior to the widespread use of genome sequencing, and their conclusions were based on a limited fraction of the Wollemi pine genome. In this study, we address this problem by determining the entire sequence of the W. nobilis chloroplast genome. A detailed analysis of the structure of the genome is presented, and the evolution of the genome is inferred by comparison with the chloroplast sequences of other members of the Araucariaceae and the related family Podocarpaceae. Pairwise alignments of whole genome sequences, and the presence of unique pseudogenes, gene duplications and insertions in W. nobilis and Araucariaceae, indicate that the W. nobilis chloroplast genome is most similar to that of its sister taxon Agathis. However, the W. nobilis genome contains an unusually high number of repetitive sequences, and these could be used in future studies to investigate and conserve any remnant genetic diversity in the Wollemi pine.     

Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)

Coconut, a member of the palm family (Arecaceae), is one of the most economically important trees used by mankind. Despite its diverse morphology, coconut is recognized taxonomically as only a single species (Cocos nucifera L.). There are two major coconut varieties, tall and dwarf, the latter of which displays traits resulting from selection by humans. We report here the complete chloroplast (cp) genome of a dwarf coconut plant, and describe the gene content and organization, inverted repeat fluctuations, repeated sequence structure, and occurrence of RNA editing. Phylogenetic relationships of monocots were inferred based on 47 chloroplast protein-coding genes. Potential nodes for events of gene duplication and pseudogenization related to inverted repeat fluctuation were mapped onto the tree using parsimony criteria. We compare our findings with those from other palm species for which complete cp genome sequences are available.     

The First Mitochondrial Genome for Caddisfly (Insecta: Trichoptera) with Phylogenetic Implications

The Trichoptera (caddisflies) is a holometabolous insect order with 14,300 described species forming the second most species-rich monophyletic group of animals in freshwater. Hitherto, there is no mitochondrial genome reported of this order. Herein, we describe the complete mitochondrial (mt) genome of a caddisfly species, Eubasilissa regina (McLachlan, 1871). A phylogenomic analysis was carried out based on the mt genomic sequences of 13 mt protein coding genes (PCGs) and two rRNA genes of 24 species belonging to eight holometabolous orders. Both maximum likelihood and Bayesian inference analyses highly support the sister relationship between Trichoptera and Lepidoptera.     

由5个DNA片段推断极度濒危植物五针白皮松的系统位置

五针白皮松(Pinus squamata X．W．Li)是上世纪90年代描述的一种中国特有松树,目前野外只有立木32株,处于极度濒危状态。前人认为这个种可能是白松亚属(subgen．Strobus)的白皮松(P．bungeana Zucc．ex Endl．)与松亚属(subgen．Pinus)的云南松(P．yunnanensis Franch．)的过渡类型,并将其归入白皮松组狐尾松亚组(subsect．Balfourianae)。本文试图在前人分子系统学工作的基础上,检测五针白皮松5个DNA片段,叶绿体基因rbcL、matK、rpl20-rps18间隔区和trn V内含子以及核糖体ITS,将五针白皮松放在整个松属中探讨其系统位置。4个叶绿体基因单独分析结果和它们的联合数据分析结果以及根据ITS得到的系统树均表明,五针白皮松是白皮松亚组(subsect．Gerardianae)的一个稳定成员,其可能的姐妹群是西藏白皮松(P．gerardiana Wall．)。对白皮松亚组的地理分布作了初步探讨。     

由5个DNA片段推断极度濒危植物五针白皮松的系统位置

五针白皮松(Pinus squamata X. W. Li)是上世纪90年代描述的一种中国特有松树,目前野外只有立木32株,处于极度濒危状态.前人认为这个种可能是白松亚属(subgen. Strobus)的白皮松(P. bungeana Zucc. ex Endl.)与松亚属(subgen. Pinus)的云南松(P. yunnanensis Franch.)的过渡类型,并将其归入白皮松组狐尾松亚组(subsect. Balfourianae).本文试图在前人分子系统学工作的基础上,检测五针白皮松5个DNA片段,叶绿体基因rbcL、matK、rpl20-rps18间隔区和trnV 内含子以及核糖体ITS,将五针白皮松放在整个松属中探讨其系统位置.4个叶绿体基因单独分析结果和它们的联合数据分析结果以及根据ITS得到的系统树均表明,五针白皮松是白皮松亚组(subsect. Gerardianae)的一个稳定成员,其可能的姐妹群是西藏白皮松(P. gerardiana Wall.).对白皮松亚组的地理分布作了初步探讨.