Rapid diagnosis of the invasive species,Frankliniella occidentalis (Pergande): a species‐specific COI marker

The western flower thrips, Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae), is an invasive species and currently occurs in only a few areas in China. An easy, accurate and developmental‐stage independent method to identify F. occidentalis would be a valuable tool to facilitate pest management decision making and, more importantly, to provide an early warning so actions can be taken to prevent its introduction into non‐infested areas. Morphological identification of thrips adults and, to a lesser extent, of second‐stage larvae is the main method currently available to identify F. occidentalis. Molecular identification, however, can be easily carried out by a non‐thrips‐specialist with a little training. In this study, DNA sequence data [within the mitochondrial cytochrome oxidase I gene (COI)] and polymerase chain reaction (PCR) were utilized to develop a molecular diagnostic marker for F. occidentalis. A primer set and PCR cycling parameters were designed for the amplification of a single marker fragment (340 bp) of F. occidentalis COI mtDNA. Specificity tests performed on 28 thrips species, efficacy tests performed on five immature developmental stages as well as on male and female adults and tests on primer sensitivity all demonstrated the diagnostic utility of this marker. Furthermore, the primer set was tested on seventeen F. occidentalis populations from different countries and invaded areas in China and proved to be applicable for all geographic populations. It was used successfully to clarify the distribution of F. occidentalis in the Beijing metro area. These results suggested that this diagnostic PCR assay provides a quick, simple and reliable molecular technique for the identification of F. occidentalis.     

Revision and description of water boatmen from the Middle-Upper Jurassic of Northern and Northeastern China (Insecta: Hemiptera: Heteroptera: Corixidae)

Four adult and immature water boatmen from the Middle Jurassic and uppermost Middle Jurassic or lowermost Upper Jurassic Jiulongshan, Haifanggou and Daohugou formations in the northern and northeastern China are described as Yanliaocorixa chinensis (Lin, 1976), Jiulongshanocorixa genuina gen. et sp. nov., and Daohugocorixa vulcanica gen. et sp. nov., referred to the extinct subfamily Velocorixinae, and Karataviella popovi sp. nov., referred to the extant subfamily Diaprepocorinae. All the forms have previously been identified as one species, Yanliaocorixa chinensis. This species, found only in the Haifanggou Formation, is absent from the Jiulongshan Formation and other sites in China. The systematic position of corixids recorded earlier from the Mesozoic of China is reviewed and reassessed. Assemblages of dominant aquatic insects from various Jurassic nonmarine sedimentary basins in northern and northeastern China are described for the first time. They are entirely different between the Jiulongshan, Haifanggou, and Daohugou formations. The first formation is probably older than the other two.     

Body mass variations in disturbed mallards Anas platyrhynchos fit to the mass‐dependent starvation‐predation risk trade‐off

For passerines the starvation‐predation risk theory predicts that birds should decrease their body mass to improve escape flight performance, when predation pressure increases. To investigate whether this theory may apply to large birds, which manage body reserves differently from small passerines, we experimentally increased the predation risk in mallards Anas platyrhynchos. Two groups were disturbed at different frequencies during experimental sessions lasting one week, while a control group was left undisturbed. We found that body mass loss and final wing loading were similar in both disturbed groups and significantly differed from the control group. Food intake in disturbed groups was reduced up to day four of the disturbance session and was lower than in the control group. Altogether our results suggest that disturbed mallards may adjust their body mass to reach a more favorable wing loading, supposedly to improve escape flight performance. Nevertheless, body mass loss in our mallards was double than what has been observed in passerines. This greater mass decrease might be explained by different strategies concerning energy storage. Furthermore, in large birds the predation component of the starvation‐predation trade‐off might be of greater importance. Hence, the observed relevance of this trade‐off over a large size range suggests that the starvation‐predation risk theory is of major ecological significance for many animal species.     

Individual species–area relationships and spatial patterns of species diversity in a Great Basin,semi‐arid shrubland

Traditional biodiversity metrics operate at the level of a plant community but do not capture spatial variation in diversity from a ‘plant's‐eye view’ of a community. Recently‐developed statistics consider the spatial patterns of plants as well as the number and distribution of species in local plant neighborhoods to quantitatively assess multispecies spatial patterns from a ‘plant's‐eye view’. We used one such statistic, the individual species area relationship (ISAR), to assess spatial patterns of species diversity in a Great Basin (USA) semi‐arid shrubland through an analysis of a spatial dataset on shrub species and locations. In conjunction with appropriate null models, the ISAR blends species area relationships with second‐order spatial statistics to measure the expected species richness in local neighborhoods of variable size around the individuals of a focal species within a community. We found that, contrary to a previous analysis using more traditional methods, the community was well‐mixed with a typical shrub surrounded on average by 4.9 shrub neighbors of 2.1 species at a neighborhood scale of 1.0 m. We also found statistically significant fine‐scale variation in diversity patterns, such that neighborhoods of two species were more diverse than expected by a heterogeneous Poisson null model that accounted for larger‐scale habitat heterogeneity. However, this effect was caused by intraspecific aggregation of these species and was not due to positive interspecific association. Contrary to previous findings in other semi‐arid shrublands, our analysis suggests that the spatial pattern of the shrub community was not significantly structured by interspecific facilitation. This result supports growing evidence for balanced species patterns of adult plants in multispecies communities. Our approach may be used in other communities to describe complex multispecies spatial patterns, quantify species‐specific associations with diversity patterns, and to generate hypotheses regarding relationships between patterns and community‐structuring processes.     

Seed predation of Copaifera langsdorffii (Fabaceae): a tropical tree with supra‐annual fruiting

Seed predation is an important ecological and evolutionary force that directly affects the distribution of plant species. Copaifera langsdorffii is a tropical tree species with supra‐annual fruiting, which has its seeds predated by a specialist endogenous insect (Rynochenus brevicollis: Curculionidae) in the Brazilian savanna. Three hypotheses were addressed: (i) the predator satiation hypothesis, (ii) the resource concentration hypothesis and (iii) the larger seed predation hypothesis. A total of 112 individual C. langsdorffii were monitored monthly from January to August during four consecutive years (from 2008 to 2011) to determine the presence of fruits on each plant. All trees produced fruits in the year 2008, whereas none of them produced flowers or fruits in 2009 or 2010. Moreover, only 65 individuals (58%) marked in 2008 produced fruits in 2011. The number of fruits per plant was approximately 21% greater in 2008 than in 2011, while the percentage of seed predation was 76% greater in 2011, thereby supporting the predator satiation hypothesis. The percentage of seeds predated was not affected by the number of fruits per plant. Therefore, our data did not support the resource concentration hypothesis. Plants producing large seeds experienced more seed predation by R. brevicollis, supporting the larger seed predation hypothesis. In addition, we also observed a positive relationship between seed volume and adult R. brevicollis weight. This study demonstrates the importance of supra‐annual fruiting for increasing survivorship of C. langsdorffii seeds both at the individual and the population level, and suggests that seed predators select plants producing large seeds as a way of increasing the number of offspring.     

Shallow water predation risk for a juvenile flatfish (winter flounder; Pseudopleuronectes americanus, Walbaum) in a northwest Atlantic estuary

Many small fish, including several juvenile Atlantic flatfish, are most abundant in shallow areas presumable because these habitats enhance survivorship and/or growth. In this study, we investigated size-dependent depth distributions and the role of shallow habitats as predator refuges for age-0 winter flounder (Pseudopleuronectes americanus) in a northwest Atlantic estuarine nursery. Analysis of trawl surveys performed during the larval settlement period throughout the Navesink River and Sandy Hook Bay, New Jersey, showed that as fish increased in size, depth of occurrence gradually decreased, so that individuals >35 mm standard length (SL) were concentrated in habitats ∼1 m deep. Tethering in structurally simple and adjacent shallow and deep habitats showed that predation risk for flounder (30-50 mm SL) was low in shallow water (<1 m) and increased rapidly with depth. Summer flounder (Paralychthys dentatus), which were more abundant in trammel nets in deep habitats and included winter flounder in their diets, appeared to be important consumers of tethered fish. Our results indicate that following larval settlement, winter flounder emigrate from or suffer high mortality in deeper water to become concentrated in shallow habitats that can serve as predator refuges even when they lack complex physical structures. These results highlight the potential for functional habitat loss when natural and/or anthropogenic factors make shallow habitats unavailable to young fish.     

Effects of community structure on the species–area relationship in China's forests

The species–area relationship (SAR) is the oldest and most frequently documented law in ecology. In a community, the SAR is regulated by the abiotic environment and biotic interactions and depends on the individual–spatial distribution of species (ISD) and the species–abundance distribution (SAD). In this study, we explored the effects of aggregation of ISDs and unevenness of SADs on SARs in forests of China by comparing the empirical and simulated SARs of 32 nested plots distributed along an extensive latitudinal gradient. Both aggregation and unevenness affected the shape of SARs significantly: ISDs accounted for 12.6 ± 4.0% of the incremental increase in species richness with area, and SADs accounted for 18.7 ± 3.8 and 23.5 ± 3.9% under the broken‐stick model and even abundance model, respectively. Effects of both aggregation and unevenness decreased as temperature increased, suggesting that individuals of a species were spatially more aggregated than random, and the individuals among species were more discrepant from the null distribution (broken‐stick model and even abundance model in this study), in the cold than in the warm areas. Taken together, our results demonstrate that ISDs and SADs within communities can shape SARs, but these effects vary along latitudinal gradients, and are likely mediated by temperature.     

Effects of predation risk on diurnal mass dynamics and foraging routines of yellowhammers (Emberiza citrinella)

Theoretical models predict that when having fat reserves iscostly in termsof predation risk, birds should decrease theirlevels of fat reserves inresponse to increased predation risk.I performed an experiment in whichyellowhammers were exposedto a control treatment, where a curtain was movedseveral timesa day, 5 days in a row, and then to a predator treatment, whereaperched, stuffed sparrowhawk appeared when the curtain was moved,5 days ina row. Between the two treatments were 2 days withoutany experimentaltreatment. The birds were expected to decreasein mass, and/or to change thedaily trajectory of mass increasein response to increased predation risk.Yellowhammers decreasedin morning mass and evening mass in response to boththe movingcurtain and the sparrowhawk compared to an untreated day beforethestart of the experiment. However, the response to both treatmentswas not thesame; in the sparrowhawk treatment the birds waitedlonger before resumingfeeding and lost more weight after eachexposure as compared to the curtaintreatment. This loss wasregained, and yellowhammers increased their intakerate. Dueto that, they reduced, although not significantly, the timespentfeeding under predation risk. A reduction in the timespent feeding underpredation risk reduces the time exposedto predators. However, if an increasein intake rate also incursa decrease in vigilance, this might increasepredation risk.The results of this study, together with other studies,indicatethat for yellowhammers a reduction in time exposed to predatorsmightbe more important for survival than a reduction in bodymass.     

Effects of predation risk on population variation in adult size in a stream-dwelling isopod

I used a combination of laboratory experiments and field surveys to examine the role that population-specific predation risk may play in shaping the life history strategy of a stream-dwelling isopod Lirceus fontinalis. Two focal populations were identified that were exposed to different predator types. The first population was exposed to larvae of the streamside salamander (Ambystoma barbouri) and the second to banded sculpin (Cottus carolinae). A laboratory experiment, in which different size classes of prey were offered simultaneously to individual predators, revealed that L. fontinalis suffered greatest mortality risk at small sizes with A. barbouri. Alternatively, with C. carolinae the risk of mortality was independent of size. Life history theory predicts that L. fontinalis from populations exposed to the gape-limited salamander larvae should be larger at maturity relative to individuals from populations exposed to C. carolinae. Field surveys on the two focal populations both within 1 year and across 4 years supported this prediction. Four other populations, two exposed to streamside salamander larvae and two to fish, provided additional support for the prediction. I concluded that L. fontinalis exhibited an adaptive response in size at maturity in response to population-specific predation risk. I then used gut content assays of the major predators to assess whether the population-specific life history strategies adopted by L. fontinalis were successful in avoiding predation.     

Electrocommunication behaviour during social interactions in two species of pulse‐type weakly electric fishes (Mormyridae)

This study compares electrocommunication behaviour in groups of freely swimming weakly electric fishes of two species, Marcusenius altisambesi and Mormyrus rume. Animals emitted variable temporal sequences of stereotyped electric organ discharges (EOD) that served as communication signals. While the waveform of individual signals remained constant, the inter‐discharge interval (IDI) patterns conveyed situation‐specific information. Both species showed different types of group behaviour, e.g. they engaged in collective (group) foraging. The results show that in each species, during different behavioural conditions (resting, foraging and agonistic encounters), certain situation‐specific IDI patterns occurred. In both species, neighbouring fishes swimming closely together interacted electrically by going in and out of synchronization episodes, i.e. periods of temporally correlated EOD production. These often resulted in echo responses between neighbours. During group foraging, fishes often signalled in a repetitive fixed order (fixed‐order signalling). During foraging, EOD emission rates of M. altisambesi were higher and more regular than those of M. rume. The two species also differed in the quantity of group behaviours with M. altisambesi being more social than M. rume, which was reflected in the lack of specific agonistic IDI patterns, more fixed‐order signalling and more communal resting behaviour in M. altisambesi.     

Ubiquitin‐specific protease‐like 1 (USPL1) is a SUMO isopeptidase with essential,non‐catalytic functions

Isopeptidases are essential regulators of protein ubiquitination and sumoylation. However, only two families of SUMO isopeptidases are at present known. Here, we report an activity‐based search with the suicide inhibitor haemagglutinin (HA)‐SUMO‐vinylmethylester that led to the identification of a surprising new SUMO protease, ubiquitin‐specific protease‐like 1 (USPL1). Indeed, USPL1 neither binds nor cleaves ubiquitin, but is a potent SUMO isopeptidase both in vitro and in cells. C13orf22l—an essential but distant zebrafish homologue of USPL1—also acts on SUMO, indicating functional conservation. We have identified invariant USPL1 residues required for SUMO binding and cleavage. USPL1 is a low‐abundance protein that colocalizes with coilin in Cajal bodies. Its depletion does not affect global sumoylation, but causes striking coilin mislocalization and impairs cell proliferation, functions that are not dependent on USPL1 catalytic activity. Thus, USPL1 represents a third type of SUMO protease, with essential functions in Cajal body biology.     

Effects of behavioral and morphological plasticity on risk of predation in a Neotropical tadpole

Predator-induced phenotypic plasticity is widespread among aquatic animals, however the relative contributions of behavioral and morphological shifts to reducing risk of predation remain uncertain. We tested the phenotypic plasticity of a Neotropical tadpole (Rana palmipes) in response to chemical cues from predatory Belostoma water bugs, and how phenotype affects risk of predation. Behavior, morphology, and pigmentation all were plastic, resulting in a predator-induced phenotype with lower activity, deeper tail fin and muscle, and darker pigmentation. Tadpoles in the predator cue treatment also grew more rapidly, possibly as a result of the nutrient subsidy from feeding the caged predator. For comparison to phenotypes induced in the experiment, we quantified the phenotype of tadpoles from a natural pool. Wild-caught tadpoles did not match either experimentally induced phenotype; their morphology was more similar to that produced in the control treatment, but their low swimming activity was similar to that induced by predator cues. Exposure of tadpoles from both experimental treatments and the natural pool to a free-ranging predator confirmed that predator-induced phenotypic plasticity reduces risk of predation. Risk of predation was comparable among wild-caught and predator-induced tadpoles, indicating that behavioral shifts can substantially alleviate risk in tadpoles that lack the typical suite of predator-induced morphological traits. The morphology observed in wild-caught tadpoles is associated with rapid growth and high competition in other tadpole species, suggesting that tadpoles may profitably combine a morphology suited to competition for food with behaviors that minimize risk of predation.     

Spatio‐temporal scaling of biodiversity and the species–time relationship in a stream fish assemblage

1. The increase of species richness with the area of the habitat sampled, that is the species–area relationship, and its temporal analogue, the species–time relationship (STR), are among the few general laws in ecology with strong conservation implications. However, these two scale‐dependent phenomena have rarely been considered together in biodiversity assessment, especially in freshwater systems. 2. We examined how the spatial scale of sampling influences STRs for a Central‐European stream fish assemblage (second‐order Bernecei stream, Hungary) using field survey data in two simulation‐based experiments. 3. In experiment one, we examined how increasing the number of channel units, such as riffles and pools (13 altogether), and the number of field surveys involved in the analyses (12 sampling occasions during 3 years), influence species richness. Complete nested curves were constructed to quantify how many species one observes in the community on average for a given number of sampling occasions at a given spatial scale. 4. In experiment two, we examined STRs for the Bernecei fish assemblage from a landscape perspective. Here, we evaluated a 10‐year reach level data set (2000–09) for the Bernecei stream and its recipient watercourse (third‐order Kemence stream) to complement results on experiment one and to explore the mechanisms behind the observed patterns in more detail. 5. Experiment one indicated the strong influence of the spatial scale of sampling on the accumulation of species richness, although time clearly had an additional effect. The simulation methodology advocated here helped to estimate the number of species in a diverse combination of spatial and temporal scale and, therefore, to determine how different scale combinations influence sampling sufficiency. 6. Experiment two revealed differences in STRs between the upstream (Bernecei) and downstream (Kemence) sites, with steeper curves for the downstream site. Equations of STR curves were within the range observed in other studies, predominantly from terrestrial systems. Assemblage composition data suggested that extinction–colonisation dynamics of rare, non‐resident (i.e. satellite) species influenced patterns in STRs. 7. Our results highlight that the determination of species richness can benefit from the joint consideration of spatial and temporal scales in biodiversity inventory surveys. Additionally, we reveal how our randomisation‐based methodology may help to quantify the scale dependency of diversity components (α, β, γ) in both space and time, which have critical importance in the applied context.     

Separating the effect of mechanisms shaping species‐abundance distributions at multiple scales in a subtropical forest

Species abundance distributions (SADs) play an important role in the current dispute over mechanisms shaping community assembly. Niche theory assumes differential occurrence of species in different habitats while neutral theory emphasizes stochastic events and dispersal. The previous tests of niche and neutral models shaping SADs lead to the claim that SADs are not informative for inferring underlying processes. Using spatial statistical models in a fully mapped 24‐ha subtropical forest in China, we first demonstrate that one can not distinguish between the effect of habitat heterogeneity and dispersal limitation on SADs by inspecting whether the observed SADs fall within 95% confidence intervals of the simulated SADs. Subsequently, we demonstrate that SADs can be used to detect mechanisms shaping SADS by comparing alternative process‐based models using model selection techniques. We found that dispersal limitation explain SADs at smaller spatial scales, while the combination of niche and dispersal limitation explain SADs at larger scales. These processes are linked with the degree of conspecific aggregation, informing further attempts to refine and parameterize the statistical theory of sampling SADs.     

Deep‐water fish assemblages in the central‐western Mediterranean (south Sardinian deep‐waters)

This paper explores structure and spatial distribution of fish assemblages in an area of the central‐western Mediterranean Sea (south Sardinian deep‐waters) at depths between 546 and 1598 m. A total of 67 species (12 chondrichthyes and 55 teleosteans) were sampled. Multivariate analysis showed a clear pattern of zonation. Three main assemblages were identified within the vertical range investigated: the first situated in the shallower area between 546 and 699 m, the second group between 720 and 1099 m, and the third between 1145 and 1598 m. Abundance values declined with increasing depth. Highest biomass values were found at depths of 720–1099 m with the presence of larger species such as Galeus melastomus, Mora moro, Trachyrhynchus scabrus and Alepocephalus rostratus. Species richness decreased with depth. The deepest bottoms of the central‐western Mediterranean Sea shelter an ichthyofauna dominated by small to medium‐sized species living in a food‐scarce environment in which some large mobile fishes are widespread.