Richness and diversity of helminth communities in the Japanese grenadier anchovy, Coilia nasus, during its anadromous migration in the Yangtze River, China

To determine the relationship between the species richness, diversity of helminth communities, and migration distance during upward migration from coast to freshwater, helminth communities in the anadromous fish Coilia nasus were investigated along the coast of the East China Sea, the Yangtze Estuary, and 3 localities on the Yangtze River. Six helminth species were found in 224 C. nasus . Changes in salinity usually reduced the survival time of parasites, and thus the number of helminth species and their abundance. Except for the 2 dominant helminths, the acanthocephalan Acanthosentis cheni and the nematode Contracaecum sp., mean abundance of other 4 species of helminths was rather low (<1.0) during the upward migration in the Yangtze River. Mean abundance of the 2 dominant helminths peaked in the Yangtze Estuary and showed no obvious decrease among the 3 localities on the Yangtze River. Mean species richness, Brillouin's index, and Shannon index were also highest in the estuary (1.93 ± 0.88, 0.28 ± 0.25, and 0.37 ± 0.34, respectively) and did not exhibit marked decline at the 3 localities on the Yangtze River. A significant negative correlation was not seen between the similarity and the geographical distance (R = -0.5104, P = 0.1317). The strong salinity tolerance of intestinal helminths, relatively brief stay in the Yangtze River, and large amount of feeding on small fish and shrimp when commencing spawning migration perhaps were responsible for the results.     

Elemental signature in otolith nuclei for stock discrimination of anadromous tapertail anchovy (Coilia nasus) using laser ablation ICPMS

The elemental signature in otolith nuclei was determined using laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) for stock discrimination of adult anadromous tapertail anchovy, Coilia nasus, in five Chinese estuaries. Five elements (Na, Mg, K, Sr, and Ba) were well detected in the otolith nuclei of the adult fish. Results showed that the elemental composition in the otolith nuclei varied substantially among the estuaries. Age and fish length data showed no significant influences on the elemental concentration ratios across the sample sites. The Sr:Ca and Ba:Ca ratios were inter-site distinct and could be used as natal tags for discriminating among stocks. Discriminant function analyses (DFA) showed that these ratios can be used in discriminating the Liaohe River estuary (LD, 92.3?%), the Yangtze River estuary (CJ, 86.7?%), and the Yellow River estuary (HH, 76.9?%) samples with high classification accuracy, followed by the Haihe River estuary (BH, 58.3?%) and the Daguhe River estuary (JZ, 46.2?%) samples. An overall classification accuracy rate of 72.7?% from the discriminant functions indicated that elemental fingerprinting appeared to have the potential to discriminate between tapertail anchovy stocks in these estuaries.     

Differentiation between populations of a termite in eastern Africa: implications for biogeography

Aim  African forests are divided by an arid corridor which runs from the Horn of Africa to the Namib Desert. Several forest species occur in the forests of eastern Africa as well as in the Guineo-Congolian forest block. We evaluate the possibility that such species may have crossed the arid corridor along a route through the Kenyan Highlands and down the eastern drainages during climatologically favourable periods in the past.
Locations  Eastern Africa, Ivory Coast.
Methods  We used the termite species Schedorhinotermes lamanianus (Sjöstedt). This species occurs in lowland forests and woodland throughout Africa south of the Sahara. We sampled termites from 12 populations. We evaluated the differentiation between populations using amplified fragment length polymorphisms as well as morphometrical measurements.
Results  Genetic and morphometrical analysis demonstrated substantial differentiation between populations west and east of the arid corridor in Kenya. To the east of this corridor we found an increase of morphological distance with geographical distance. Schedorhinotermes lamanianus occurs not only along the coast but also at isolated locations (e.g. ground-water forests in foothills) within the arid hinterland.
Main conclusions  We interpret these populations as remnants of a wider distribution during wet climatic periods. At these times, populations of S. lamanianus were apparently able to establish along extensive gallery forests protruding into the arid belt of the Kenyan hinterland. There have been no connections between populations of this species east and west of the arid corridor across the Kenyan Highlands.     

The migratory history of anadromous and non-anadromous tapertail anchovy Coilia nasus in the Yangtze River Estuary revealed by the otolith Sr:Ca ratio

The migratory history of tapertail anchovy Coilia nasus in the Yangtze River Estuary, China was investigated using otolith Sr:Ca ratios and two-dimensional images of the Sr level from an X-ray electron probe microanalyzer (EPMA). The results showed that 17 of the 22 young-of-the-year (YOY) specimens had low Sr:Ca ratios (1.2–2.4?×?10^?3;1.5?±?0.3?×?10^?3) at the central otolith area, indicating their riverine origin and initial freshwater residence. In addition, 11 of the 14 adult specimens had low Sr:Ca ratios (1.3–2.2?×?10^?3; 1.7?±?0.4?×?10^?3) at the central otolith area but showed alternating changes between high (>4.0?×?10^?3) and low (<2.5?×?10^?3) values outside of this region, reflecting their riverine origin and the migration between freshwater and estuarine habitats. These 28 specimens represented the anadromous population in this region. The other 5 YOY specimens had high Sr:Ca ratios (3.6–5.9?×?10^?3; 4.8?±?0.8?×?10^?3) throughout the life history. Similarly, the other 3 adult specimens had high Sr:Ca ratios (4.0–5.7?×?10^?3; 4.8?±?0.7?×?10^?3) at the central otolith area but showed alternating changes between low and high values outside this region, suggesting that estuarine-origin non-anadromous individuals occurred in this region. The average of the otolith Sr:Ca ratios and Sr level mapping along the life-history transects could be used as a scalar for charting the migratory history of the tapertail anchovy in the Yangtze River Estuary: <2.0?×?10^?3 for freshwater residence and 3.5–6.0?×?10^?3 for estuarine residence.     

Seasonal occurrence of helminths in the anadromous fish Coilia nasus (Engraulidae): parasite indicators of fish migratory movements

To understand the seasonal migration of the anadromous Coilia nasus , we attempted to identify the parasites infecting C. nasus and determine their seasonal occurrence. From June 2007 to July 2008, a survey of 775 C. nasus individuals from the estuary of the Yangtze River and the coast of the East China Sea revealed more than 7,300 parasites associated with the gills and alimentary tracts of C. nasus . The following 6 helminth taxa were identified, i.e., the monogeneans Heteromazocraes lingmueni and Helciferus tenuis, the digenean Elytrophallus coiliae, the acanthocephalan Acanthosentis cheni , and larvae of the nematodes Anisakis simplex and Contracaecum sp., all of which are marine or brackish-water parasites. The absence of freshwater helminths suggested that the parasites acquired in freshwater may have been accidentally, and easily, lost by the time the fish had reached the estuary and coast. Contrary to seasonal occurrence of the parasites' life cycles, the lowest mean abundance and prevalence of H. lingmueni and A. cheni occurred in August, which suggested the immigration of C. nasus from freshwater to the Yangtze estuary, with lower parasite burdens. The highest mean abundance and prevalence of the nematodes A. simplex and Contracaecum sp. in May and June, and the lowest in August, indicated the arrival of the fish from the coast and the Yangtze River, to the estuary, respectively. These findings suggested that a majority of the fish prepared for spawning migration in the estuary in spring and early summer and returned to the estuary after spawning in the lower and middle reaches of the Yangtze River in late summer.     

Linkage maps for the Pacific abalone (genus Haliotis) based on microsatellite DNA markers

This study presents linkage maps for the Pacific abalone (Haliotis discus hannai) based on 180 microsatellite DNA markers. Linkage mapping was performed using three F1 outbred families, and a composite linkage map for each sex was generated by incorporating map information from the multiple families. A total of 160 markers are placed on the consolidated female map and 167 markers on the male map. The numbers of linkage groups in the composite female and male maps are 19 and 18, respectively; however, by aligning the two maps, 18 linkage groups are formed, which are consistent with the haploid chromosome number of H. discus hannai. The female map spans 888.1 cM (Kosambi) with an average spacing of 6.3 cM; the male map spans 702.4 cM with an average spacing of 4.7 cM. However, we encountered several linkage groups that show a high level of heterogeneity in recombination rate between families even within the same sex, which reduces the precision of the consolidated maps. Nevertheless, we suggest that the composite maps are of significant potential use as a scaffold to further extend the coverage of the H. discus hannai genome with additional markers.     

Use of inter-simple sequence repeat (ISSR) markers for discrimination between and within species of blackflies (Diptera: Simuliidae)

The present study is the first report of fingerprinting in blackflies (Diptera: Simuliidae), using inter-simple sequence repeat (ISSR) markers. Among five primers tested, three tetranucleotide repeat primers ((GACA)₄, (ACTG)₄, (ACAG)₄) generated a high proportion of polymorphic bands. Seven species representing various genera, subgenera or species groups were compared. No similar profiles were found. Intraspecific and interspecific banding patterns were analysed for two species in the Prosimulium hirtipes (Fries, 1824) species group and four species in the Simulium variegatum (Meigen, 1818) species group. The UPGMA cluster analysis based on Jaccard’s coefficient demonstrated the intraspecific and interspecific diversity and the resolving power of the ISSR markers to differentiate blackfly species and populations. In Simulium maximum (Knoz, 1961), geographically defined populations were successfully discriminated.     

Genetic variation in five Mediterranean populations of Juniperus phoenicea as revealed by inter-simple sequence repeat (ISSR) markers

BACKGROUND AND AIMS: The assessment of the genetic variability and the identification of isolated populations within a given species represent important information to plan conservation strategies on a genetic basis. In this work, the genetic variability in five natural populations of Juniperus phoenicea, three from Sardinia, one from Cyprus and the last one in the Maritime Alps was analysed by means of ISSRs, on the hypothesis that the latter could have been a refugial one during the last glaciation. METHODS: ISSRs were chosen because of their ability to detect variation without any prior sequence information. The use of three primers yielded 45 reproducible, polymorphic bands, which were utilized to estimate the basic parameters of genetic variability and diversity. KEY RESULTS: All of the populations analysed harboured an adequate amount of genetic variability, with H(S) = 0.1299. The proportion of genetic diversity between populations has been estimated by G(ST) = 0.12. The three Sardinian populations are separated, as tested by AMOVA, from the Cyprus and the continental ones. CONCLUSIONS: The results indicate that geographical isolation has represented a major barrier to gene flow in Juniperus phoenicea. This work represents a first step towards a full genetic characterization of a conifer from the Mediterranean, a world biodiversity hotspot confronted with climate change, and thus contributes towards the planning of genetics-informed conservation strategies.     

Genetic variation and clonal diversity in populations of Nelumbo nucifera (Nelumbonaceae) in central China detected by ISSR markers

To obtain accurate estimates of population structure for purposes of conservation planning for wild lotus (Nelumbo nucifera Gaertn.) in central China, genetic diversity among and within six populations, and clonal diversity within another two populations of the species were analyzed. The genetic diversity was high (percentage of polymorphic bands, PPB = 90.0%; Shannon's information index, I = 0.383 ± 0.234) at the species level, but low within individual study populations (PPB = 35.8%; Shannon's information index I = 0.165 ± 0.241). The mean coefficient of gene differentiation (G_st) was 0.570, indicating that 43.0% of the genetic diversity resided within the population. Analysis of molecular variance (AMOVA) indicated that 50.47% of the genetic diversity among the study populations was attributed to geographical location while 12.3% was attributed to differences in their habitats. An overall value of mean estimated number of gene flow (N_m = 0.377) indicated that there was limited gene flow among the sampled populations. The level of clonal diversity found within the populations was considerably high (Simpson's diversity index, D = 0.985) indicating that clonal diversity contributes to a major extent to the overall genetic variation in the genetic structure of N. nucifera. On the basis of the high G_st and D values detected in this study we recommend that any future conservation plans for this species should be specifically designed to include those representative populations with the highest genetic variation for both in situ conservation and germplasm collection expeditions.     

Patterns of Differentiation in Wiregrass (Aristida beyrichiana): Implications for Restoration Efforts

Aristida beyrichiana (wiregrass) is increasingly being planted in restoration projects across the southeastern coastal plain, with little focus on genetic differences among populations across the region. Local and regional population differentiation for establishment and growth traits were examined in common garden and reciprocal transplant experiments. Seeds from up to 20 plants from each of seven populations were collected in northern and central Florida sites that encompassed gradients of soils, hydrology, and temperature. Reciprocal seed transplants using three of the common garden populations were conducted in two consecutive years. In the common garden, significant population differences were seen in seed weight, seedling emergence and survival, tiller height, number of tillers, the relationship between tiller number and tiller height, and flowering. Variation among maternal families was seen in tiller number and in the relationship between tiller number and tiller height. The reciprocal transplant study did not detect either local adaptation to sites of origin or consistent superiority of one source population or planting site in seedling establishment. These results suggest that the probability of seedling establishment is primarily dependent on environmental conditions rather than genetic differences. Genetic variation for traits related to fitness (e.g., tiller number) may be retained within populations because phenotypically plastic growth responses of seedlings to environmental variation buffer genetic variation against the action of selection. But despite the lack of evidence for genetic influences on initial establishment in wiregrass, our common garden study suggests genetic differences among populations. This result, when combined with previous results indicating local adaptation in later life stages of wiregrass, suggests that restoration efforts involving this species should use local seed sources from sites with similar soil and hydrological conditions.     

Variation and genetic structure of Melipona quadrifasciata Lepeletier (Hymenoptera, Apidae) populations based on ISSR pattern

For a study of diversity and genetic structuring in Melipona quadrifasciata, 61 colonies were collected in eight locations in the state of Minas Gerais, Brazil. By means of PCR analysis, 119 ISSR bands were obtained, 80 (68%) being polymorphic. H_e and H _B were 0.20 and 0.16, respectively. Two large groups were obtained by the UPGMA method, one formed by individuals from Januária, Urucuia, Rio Vermelho and Caeté and the other by individuals from São João Del Rei, Barbacena, Ressaquinha and Cristiano Otoni. The Φst and θ^B values were 0.65 and 0.58, respectively, thereby indicating high population structuring. UPGMA grouping did not reveal genetic structuring of M. quadrifasciata in function of the tergite stripe pattern. The significant correlation between dissimilarity values and geographic distances (r = 0.3998; p < 0.05) implies possible geographic isolation. The genetic differentiation in population grouping was probably the result of an interruption in gene flow, brought about by geographic barriers between mutually close geographical locations. Our results also demonstrate the potential of ISSR markers in the study of Melipona quadrifasciata population structuring, possibly applicable to the studies of other bee species.     

Polymorphism in Metarhizium anisopliae var. anisopliae (Hypocreales: Clavicipitaceae) based on internal transcribed spacer-RFLP, ISSR and intron markers

Isolates of entomopathogenic fungus Metarhizium anisopliae var. anisopliae were characterized using internal transcribed spacer-RFLP, ISSR and intron splice site primers. Thirty-seven isolates were studied, most of which were obtained from the sugar cane pest, Mahanarva fimbriolata (Hemiptera: Cercopidae) from Tangará da Serra, Southwest Mato Grosso State, Brazil. Internal transcribed spacer-RFLP did not differentiate the isolates of M. anisopliae var. anisopliae, while ISSR and intron primers identified three distinct groups. Variability among these groups was 96% for (GTG)(5) and 100% for the other primers. We found considerable genetic variability, even among isolates from the same geographical origin and host.     

Genetic diversity of wild and cultured swamp eel (Monopterus albus) populations from central China revealed by ISSR markers

Asian swamp eel is a highly commercial fish, primarily for China and other Asian countries. The aim of this paper is to evaluate the genetic diversity of wild and cultured samples of Asian swamp eel Monopterus albus using ISSR markers. A total of 129 individuals belonging to three wild samples, Xiantao (XT), Huanggang (HG), Xinyang (XY) and three cultured samples, Wuhan (WH), Jingzhou (JZ) and Nanjing (NJ) were randomly selected for genetic analysis. Twelve ISSR primers were used for screening the six populations and 110 loci were obtained. The polymorphic loci were estimated to be 54%, 56.3%, 58.2%, 60.6%, 69.5% and 71% in NJ,WH, JZ, XT, HG and XY samples, respectively. Average heterozygosity value varied from 0.1956 to 0.2449. The three wild samples showed higher genetic diversity than the cultured samples (P < 0.05), including polymorphic bands (PPB), observed number of alleles per locus (_to), effective number of alleles per locus (Ne), Nei’s gene diversity index (H) and Shannon’s information index (I).     

北部湾6个拟穴青蟹群体遗传多样性的ISSR分析

应用ISSR标记技术分析来自北部湾的拟穴青蟹6个地理群体(清化、党江、钦州湾、流沙湾、珍珠湾、闸口)的遗传变异和遗传结构,8条ISSR引物扩增111个个体,分析其中的66个位点,56个位点表现出多态性,表明拟穴青蟹在物种水平上的多态位点百分率是84.85％.拟穴青蟹6个群体的多态位点百分率为51.52％ ～63.64％,平均为57.58％.群体的遗传多样性按自高至低顺序排列为清化群体＞党江群体＞钦州湾群体＞流沙湾群体＞珍珠湾群体＞闸口群体.拟穴青蟹在种水平或群体水平上的多态位点百分率和Shannon信息指数表明,拟穴青蟹遗传多样性在甲壳类动物中处于较高层次,但比甲壳类以外的几类经济海产动物遗传多样性低.总的遗传分化系数GST值为0.1841,表明,总遗传变异的绝大部分存在于群体内,群体间的遗传分化程度较大.但是,绝大部分两两群体间的遗传分化系数值在0.0689 ～0.1276,为中等程度的遗传分化.AMOVA分析表明,群体内遗传变异占87.97％,群体间遗传变异占12.03％,群体间遗传分化程度中等但分化显著.Mantel test结果表明,拟穴青蟹6个群体间的遗传距离与地理距离之间的相关性不显著.聚类分析表明,来自广西沿海的4个群体聚成一支.     

Implications of ITS sequences and RAPD markers for the taxonomy and biogeography of the Oxytropis campestris and O. arctica (Fabaceae) complexes in Alaska

Taxonomic consensus is lacking on the Oxytropis arctica and O. campestris species complexes, two polyploid complexes found in the interior and arctic areas of Alaska. One classification has emphasized flower size, whereas flower color is considered a key diagnostic character in another classification. Our analyses of internal transcribed spacer (ITS) sequences and random amplified polymorphic DNA (RAPD) markers provided no support for either classification system. The trees generated from ITS sequences and the phenogram derived from RAPD markers suggest that most recognized taxa in the two complexes are probably polyphyletic, including O. arctica var. barnebyana, which is listed as threatened in Alaska. The only consistent pattern detected by both types of molecular markers was a geographic split dividing the northeastern arctic populations from most other populations (48.60-55.03% in AMOVA analyses). This genetic subdivision probably reflects a Pleistocene barrier formed by the northern coastal ice shield. Our molecular data, in conjunction with the previously reported variation of ploidy levels in these groups, suggest a scenario of recent and multiple origins of polyploidy. It is possible that most Alaskan populations of these two complexes are best referred to as a single taxonomic species despite morphological differentiation within the complexes.     

Differentiation and phylogenetic relationship among different cultivars of asparagus bean (Vigna unguiculata ssp. sesquipedalis) assessed using ISSR markers

Asparagus bean, one of the three subspecies of Vigna unguiculata, has a long cultivation history in China. The genetic diversity was analyzed based on the 66 landraces and cultivars cultivated in China by using ISSR molecular markers, with which 192 amplification loci were obtained 32.3% of them being polymorphic. The genetic differentiation analysis revealed a very high genetic diversity in the Chinese landraces, which confirmed that China is the secondary origin centre of the asparagus bean. The commercial cultivars bred in China were genetically highly homogenous, suggesting that the breeding process has resulted in disappearance of some of the genetic variation. A cluster analysis at 0.17 of Nei genetic distance divided the 66 landraces and cultivars into 9 groups. Their clustering pattern basically matches the phylogeny of those cultivars, and also corresponds to their geographical origin and morphological traits.