Biodiversity and community structure of Late Pleistocene foraminifera from Kish Island, Persian Gulf (Iran)

The raised coral reef sequences at Kish Island provide a rare window into the depositional setting and paleoenvironment of a high-latitude, shallow-water coral reef that developed under turbid conditions in the Persian Gulf during Marine Isotope Stage 7 (~200 to 250?ka). Six sedimentary facies and eight foraminiferal assemblages can be identified throughout the sequence. A ninth assemblage can be defined for the modern subtidal realm. At the base of the sequence is a marl rich in hyaline foraminifera (Elphidium, Ammonia, Asterorotalia, Bulimina, Nonion, and Quinqueloculina) and ostracods, which was deposited in about 30–40?m water depth in a turbid deltaic setting. Shallowing resulted in the marl becoming sandy, and changing to a mollusc-rich facies with rare foraminifera (mostly smaller miliolid taxa) that formed the substrate for coral recruitment. The coral marl layer contains many large corals embedded in situ in an aggregate and coralline algae-rich marl. Two abundance peaks in the foraminifera occur at the base and mid-way through this layer, which also correspond to a change from Murrayinella-dominated to Placopsilina-dominated assemblages, indicating deepening and more open-marine conditions, but elevated turbidity. Towards the top of the layer, abundance of foraminifera decreases and miliolid foraminifera become dominant. The top-most layer is dominated by coral and mollusc fragments and has an Amphistegina-rich reef-related assemblage. Of the Late Pleistocene foraminiferal assemblages, the Murrayinella-, Pararotalia-, and Placopsilina-dominated assemblages are no longer present in the modern gulf for unknown reasons. Of the other five assemblages, only the Amphistegina assemblage is found within proximity to the modern Kish Island. The Elphidium and Asterorotalia-Bulimina assemblages are from deeper areas of the gulf. The Ammonia and Quinqueloculina assemblages occur in lagoonal sediments on the Arabian side of the gulf. Like the modern Persian Gulf, the diversity of foraminifera was low (~80 common species) during the Pleistocene and does not correlate with foraminiferal abundance.     

Palaeogeographic and stratigraphic distribution of mid-late Oxfordian foraminiferal assemblages in the Prebetic Zone (Betic Cordillera, Southern Spain)

Middle-Upper Oxfordian assemblages of foraminifera in the Prebetic Zone (Betic Cordillera, SE Spain) were analysed at the genus level to determine their composition, relative abundance, diversity, and dominance, as well as the size of the specimens. A relationship has been established between lithofacies, palaeogeography and composition of foraminiferal assemblages, the former two also determining the stratigraphic record of these microfossil assemblages. Two assemblages of foraminifera serve to identify relatively distal and proximal areas in the Prebetic shelf. The distal assemblage is characterized by higher diversity, specimens of greater size, and more abundant planktic and agglutinated forms. Benthic forms include Ophthalmidium, Epistomina and colonies of encrusting foraminifera. The proximal assemblage shows lower diversity, lower abundance of planktic forms, Epistomina and encrusting nubeculariids, and a greater abundance of spirillinids and Reofax. On the whole, planktic foraminifera decrease upwards in the studied succession, which, together with decreasing nodularity, could be related to system tract conditions previously proposed for Oxfordian deposits in the southern palaeomargin of Iberia.     

Distant Storms as Drivers of Environmental Change at Pacific Atolls

The central Pacific Ocean with its many low lying islands and atolls is under threat from sea level rise and increased storm activity. Here, we illustrate how increasing frequency and severity of large scale storm events associated with global climate change may be particularly profound at the local scale for human populations that rely on lagoon systems for provision of a variety of goods and services. In August 2011 a storm originating in the Southern Ocean caused a large amplitude ocean swell to move northward through the Pacific Ocean. Its arrival at Palmyra Atoll coincided with transient elevated sea surface height and triggered turnover of the lagoon water column. This storm-induced change to the lagoon reflects long distance connectivity with propagated wave energy from the Southern Ocean and illustrates the increasing threats generated by climate change that are faced by human populations on most low-lying Pacific islands and atolls.     

Holocene trends in distribution and diversity of benthic foraminifera assemblages in atoll lagoons,Belize, Central America

Seven benthic foraminiferal assemblages were identified in vibracores through Holocene lagoons of three Belize atoll lagoons (Glovers Reef, Lighthouse Reef, Turneffe Islands). These include (1) the low-diversity Cribroelphidium assemblage (2) the Cribroelphidium-Elphidium assemblage (3) the Quinqueloculina-Triloculina-Peneroplis assemblage (4) the high-diversity miliolid assemblage (5) the Archaias-miliolid assemblage (6) the low-diversity miliolid assemblage, and (7) the mixed assemblage. Altogether, 109 species and 56 genera were identified. The highest diversities are observed in the largest lagoon (Turneffe Islands), whereas one of the smaller lagoons (Glovers Reef) exhibits the lowest diversities during the Holocene. No significant changes in diversity over time occur, however, a slight trend to higher diversity may be observed through the Holocene, suggesting that the foraminiferal faunas in the atolls are in a diversification stage. Faunal diversity in atoll lagoons appears to be controlled largely by habitat size, habitat heterogeneity, and water circulation. Habitat age and water depth only play minor roles. Substrate texture, water depth, and turbidity influence the predominant modes of life of benthic foraminifera encountered in the lagoons (epifaunal versus infaunal versus symbiont-bearing). Time-averaging effects were not observed, even though lagoonal sedimentation rates fluctuate in individual cores and the three lagoons, and despite the fact that sediments are modified through bioturbation by callianassid shrimps. This finding underlines the potential of benthic foraminifera for paleoecological studies in the fossil record of reefs and carbonate platforms.     

Ecosystem indicators: Foraminifera,Thecamoebians and Diatoms from the Ologe Lagoon,Nigeria

The Ologe Lagoon in southwestern Nigeria is a natural habitat located closely to both residential and industrial estates. The lagoon is heavily affected by effluents of agricultural and industrial runoff including organochlorine compounds and heavy metals (chloropesticides, DDT and polychlorinated biphenyls, cadmium, manganese, zinc, copper, lead, iron and nickel). Ologe Lagoon is situated in a semi-isolated position and its brackish waters traverse several creeks and lagoons before it reaches the Atlantic Ocean. The lagoon experiences minor tidal but noticeable salinity and pH variations during the rainy season. During the dry season, however, the waters have a comparatively long resident time where sediments act as sink and aggregate contaminants over time. Investigations on benthic foraminifera, thecamoebian and diatom species were carried out to document the current status, composition, spatial distribution, and response of microfaunal assemblages to environmental stressors within the lagoon. The benthic foraminifer assemblage is composed of four highly specialized agglutinated species of Ammotium salsum, Miliammina fusca, Ammobaculites dilatatus and Ammobaculites aff. A. exiguus. They are present at all sample sites with varying abundances. The high abundance of Ammotium salsum is considered an indication of environmental stress. Thecamoebian species of Difflugia oblonga, Difflugia proteiformis and Pontigulasia compressa were also recorded in varying proportions and generally represent less than one percent of the total foraminifera/thecamoebian assemblage. The presence of marine brackish water larger siliceous diatoms of Actinoptychus and Campylodiscus species indicates an interaction between the lagoon and the marine waters although on the minimal scale with regards to actual salinity ranges. The faunal assemblages recovered are characterized by low species richness and alpha diversity indices and are typical of shallow, marginal-marine hyposaline environments. Numerical abundances and spatial distribution patterns suggest taxon-specific habitat preferences and highlight their potential for environmental monitoring studies.     

Spatial Patterns in the Distribution,Diversity and Abundance of Benthic Foraminifera around Moorea (Society Archipelago,French Polynesia)

Coral reefs are now subject to global threats and influences from numerous anthropogenic sources. Foraminifera, a group of unicellular shelled organisms, are excellent indicators of water quality and reef health. Thus we studied a set of samples taken in 1992 to provide a foraminiferal baseline for future studies of environmental change. Our study provides the first island-wide analysis of shallow benthic foraminifera from around Moorea (Society Archipelago). We analyzed the composition, species richness, patterns of distribution and abundance of unstained foraminiferal assemblages from bays, fringing reefs, nearshore and back- and fore-reef environments. A total of 380 taxa of foraminifera were recorded, a number that almost doubles previous species counts. Spatial patterns of foraminiferal assemblages are characterized by numerical abundances of individual taxa, cluster groups and gradients of species richness, as documented by cluster, Fisher α, ternary plot and Principal Component Analyses (PCA). The inner bay inlets are dominated by stress-tolerant, mostly thin-shelled taxa of Bolivina, Bolivinella, Nonionoides, Elongobula, and Ammonia preferring low-oxygen and/or nutrient-rich habitats influenced by coastal factors such as fresh-water runoff and overhanging mangroves. The larger symbiont-bearing foraminifera (Borelis, Amphistegina, Heterostegina, Peneroplis) generally live in the oligotrophic, well-lit back- and fore-reef environments. Amphisteginids and peneroplids were among the few taxa found in the bay environments, probably due to their preferences for phytal substrates and tolerance to moderate levels of eutrophication. The fringing reef environments along the outer bay are characterized by Borelis schlumbergeri, Heterostegina depressa, Textularia spp. and various miliolids which represent a hotspot of diversity within the complex reef-lagoon system of Moorea. The high foraminiferal Fisher α and species richness diversity in outer bay fringing reefs is consistent with the disturbance-mosaic (microhabitat heterogeneity) hypothesis.Calculations of the FORAM Index (FI), a single metric index to assess reef vitality, indicate that all fore- and most back-reef environments support active carbonate accretion and provide habitat suitability for carbonate producers dependent on algal symbiosis. Lowest suitability values were recorded within the innermost bays, an area where natural and increasing anthropogenic influences continue to impact the reefs. The presence of habitat specific assemblages and numerical abundance values of individual taxa show that benthic foraminifera are excellent recorders of environmental perturbations and good indicators useful in modern and ancient ecological and environmental studies.     

Sedimentation on Rasdhoo and Ari Atolls, Maldives, Indian Ocean

A first systematic study of composition, texture, and distribution of modern sediments in two Maldivian atolls reveals the predominance of skeletal carbonates. Fragments of corals, calcareous algae, mollusks, benthic foraminifera, and echinoderms are identified in the grain-size fraction >125 μm. Non-skeletal grains such as cemented fecal pellets and aggregate grains only occur in small percentages. Fragments of skeletal grains, aragonite needles, and nanograins (<1 μm) are found in the grain-size fraction <125 μm. Needles and nanograins are interpreted to be largely of skeletal origin. Five sedimentary facies are distinguished (1–5), for which the Dunham-classification is applied. Fore reef, reef, back reef, as well as lagoonal patch reef and faro areas in both atolls are characterized by the occurrence of coral grainstones (1), which also contain fragments of red coralline algae, the codiacean alga Halimeda, and mollusks. On reef islands, coral-rich sediment is cemented to form intertidal beachrock and supratidal cayrock. Skeletal grains in atoll-interior lagoons are mainly mollusks and foraminifera. The lagoon of Rasdhoo Atoll is covered in the west by mudstones (2), in the center by mollusk packstones (3) and mollusk wackestones (4), and by hard bottoms with corals in the east adjacent to channels through the atoll reef margin. The interior lagoon of Ari Atoll contains mollusk wackestones (4) in the center and mollusk-foraminifer packstones (5). Marginal lagoon areas are characterized by hard bottoms with corals. Facies distribution appears to be an expression of depositional energy, which decreases from the atoll margin towards the center in Ari Atoll, and towards the west in Rasdhoo Atoll. Predominant sediment mineralogies include aragonite and high-magnesium calcite. Mean aragonite content decreases from 90% in coral grainstone to 70–80% in mollusk packstone, mollusk wackestone, and mudstone, and to 50% in mollusk-foraminifer packstone. Stable isotopes of oxygen and carbon in bulk samples range from −3 to −1.5 (δ¹⁸O) and from +0.4 to +3.2 (δ¹³C). It is not possible to delineate facies based on O- and C-isotopes.     

Distribution and taxonomy of shallow marine Ostracods from Northern Socotra Island (Indian Ocean) - Yemen

Forty-seven species belonging to 30 genera of ostracods have been identified from Recent shallow marine sediments collected along the northern coastline of the island of Socotra (Indian Ocean). The systematics and distribution of these ostracods are discussed. Three genera, Loxoconcha, Bosasella, and Xestoleberis are found to have high species diversity. The species Loxoconcha ghardaqensis, Moosella striata are best documented in the Red Sea and Gulf of Aden while Kotoracythere inconspicua and Triebelina sertata were found to be the most widespread species. The fauna shows a close affinity to other ostracod assemblages of the Indo-Pacific region, East African coast and Red Sea.     

Early Miocene reef- and mudflat-associated gastropods from Makran (SE-Iran)

A new gastropod fauna of Burdigalian (early Miocene) age is described from the Iranian part of Makran. The fauna comprises 19 species and represents three distinct assemblages from turbid water coral reef, shallow subtidal soft-bottom and mangrove-fringed mudflat environments in the northern Indian Ocean. Especially the reef-associated assemblage comprises largely new species. This is explained by the rare occurrence of reefs along the northern margin of the Miocene Indian Ocean and the low number of scientific studies dealing with the region. In terms of paleobiogeography, the fauna corresponds well to coeval faunas from the Pakistani Balochistan and Sindh provinces and the Indian Kathiawar, Kutch and Kerala provinces. During the early Miocene, these constituted a discrete biogeographic unit, the Western Indian Province, which documents the near complete biogeographic isolation from the Proto-Mediterranean Sea. Some mudflat taxa might represent examples of vicariance following the Tethys closure. The fauna also displays little connection with coeval faunas from Indonesia, documenting a strong provincialism within the Indo-West Pacific Region during early Miocene times. Neritopsis gedrosiana sp. nov., Calliostoma irerense sp. nov., Calliostoma mohtatae sp. nov. and Trivellona makranica sp. nov. are described as new species.     

A molecular survey of protist diversity through the central Arctic Ocean

The protist assemblage in the central Arctic Ocean is scarcely surveyed despite them being the major primary producers. Elucidating their response to changing environmental variables requires an a priori analysis of their current diversity, including abundant and rare species. In late summer 2011, samples were collected during the ARK-XXVI/3 expedition (RV Polarstern) to study Arctic protist community structures, by implementation of automated ribosomal intergenic spacer analysis (ARISA) and 454-pyrosequencing. Protist assemblages were related to the hydrology and environmental variables (temperature, salinity, ice coverage, nitrate, phosphate, and silicate). The abundant (≥1 %) biosphere and rare (<1 %) biosphere were considered separately in the diversity analysis in order to reveal their mutual relationships. A relation between hydrology and protist community structure was highly supported by ARISA and partially by 454-pyrosequencing. Sea ice showed a stronger influence on the local community structure than nutrient availability, making statements on the water mass influence more difficult. Dinoflagellates (Syndiniales), chlorophytes (Micromonas spp.), and haptophytes (Phaeocystis spp.) were important contributors to the abundant biosphere, while other dinoflagellates and stramenopiles dominated the rare biosphere. No significant correlation was found between the abundant and rare biosphere. However, relative contributions of major taxonomic groups revealed an unexpected stable community structure within the rare biosphere, indicating a potential constant protist reservoir. This study provides a first molecular survey of protist diversity in the central Arctic Ocean, focusing on the diversity and distribution of abundant and rare protists according to the environmental conditions, and can serve as baseline for future analysis.     

Blooms of Single Bacterial Species in a Coastal Lagoon of the Southwestern Atlantic Ocean

We investigated seasonal differences in community structure and activity (leucine incorporation) of the planktonic bacterial assemblage in the freshwater and brackish-water zones of a shallow coastal lagoon of the southwestern Atlantic Ocean. Alphaproteobacteria formed the dominant microbial group in both zones throughout the sampling period. After an intrusion of marine water, members of the SAR11 lineage became abundant in the brackish-water zone. These bacteria were apparently distributed over the lagoon during the following months until they constituted almost 30% of all prokaryotic cells at both sampling sites. At the first sampling date (March 2003) a single alphaproteobacterial species unrelated to SAR11, Sphingomonas echinoides, dominated the microbial assemblages in both zones of the lagoon concomitantly with a bloom of filamentous cyanobacteria. Pronounced maxima of leucine incorporation were observed once in each zone of the lagoon. In the freshwater zone, this highly active microbial assemblage was a mix of the typical bacteria lineages expected in aquatic systems. By contrast, a single bacterial genotype with >99% similarity to the facultative pathogen gammaproteobacterial species Stenotrophomonas maltophilia formed >90% of the bacterial assemblage (>10⁷ cell ml⁻¹) in the brackish-water zone at the time point of highest bacterial leucine incorporation. Moreover, these bacteria were equally dominant, albeit less active, in the freshwater zone. Thus, the pelagic zone of the studied lagoon harbored repeated short-term blooms of single bacterial species. This finding may have consequences for environmental protection.     

Benthic foraminiferal paleoenvironmental reconstruction from the Upper Coniacian-Lower Campanian succession in north-western Tunisia

Quantitative analysis of benthic foraminifera is used to characterize the paleoenvironments of the Upper Coniacian-Lower Campanian succession in the Jbil section of north-western Tunisia. Foraminiferal parameters and benthic foraminiferal assemblages show that the studied section includes four distinct paleoenvironmental phases. From oldest to youngest, these are as follows: (1) an interval with a Praebulimina reussi assemblage with infaunal ratios as high as 96.1%. High abundances of P. reussi, reflecting an increase in organic matter flux to the seafloor (meso-to eutrophic) under oxygenated bottom-water conditions. (2) An interval characterized by a Gavelinella costulata assemblage with mixed infaunal/epifaunal foraminifera with higher Fisher's alpha values (ranging from 4 to 15.2), reflecting mesotrophic conditions in an outer shelf environment. (3) An interval with a Gaudryina laevigata assemblage indicative of a middle to outer shelf environment; there is a considerable increase in infaunal agglutinated foraminifera, as well as a relatively abundant and moderately diversified oxic/suboxic foraminifera. (4) The final interval occurs in the lower Campanian (the Globotruncana ventricosa Zone) and includes a Bolivinoides decoratus assemblage reflecting an outer shelf to upper bathyal environment. It contains a higher planktonic percentage and biodiversity with a slight increase in dysoxic species; the mixed infaunal/epifaunal content (57.6 to 73.3%) reflects mesotrophic conditions. Four well-recognized major sea-level falls are matched by the dual signatures of eustatic sea-level changes. These are coincident with the results of this study, which represent the first documentation of these events in Tunisian faunal and paleoenvironmental changes, at the following boundaries: Coniacian/Santonian, intra-Santonian, Santonian/Campanian, and intra-early Campanian.     

First record ofBorelis melo andDendritina sp. in the Messinian of SE Spain (Cabo de Gata, Province Almeria)

Borelis melo andDendritina sp. occur in Messinian carbonates of the Cabo de Gata near Almeria. This is the first record of these larger benthic foraminifera from Messinian deposits in SE Spain. Two foraminiferal assemblages are differentiated: firstly, aBorelis- Dendritina assemblage which occurs on reef flanks, and secondly a lagoonal monospecificDendritina fauna.     

Isolated reefs support stable fish communities with high abundances of regionally fished species

Anthropogenic impacts at isolated and inaccessible reefs are often minimal, offering rare opportunities to observe fish assemblages in a relatively undisturbed state. The remote Rowley Shoals are regarded as one of the healthiest reef systems in the Indian Ocean with demonstrated resilience to natural disturbance, no permanent human population nearby, low visitation rates, and large protected areas where fishing prohibitions are enforced. We used baited remote underwater video systems (BRUVS) to quantify fish assemblages and the relative abundance of regionally fished species within the lagoon, on the slope and in the mesophotic habitat at the Rowley Shoals at three times spanning 14 years and compared abundances of regionally fished species and the length distributions of predatory species to other isolated reefs in the northeast Indian Ocean. Fish assemblage composition and the relative abundance of regionally fished species were remarkably stable through time. We recorded high abundances of regionally fished species relative to other isolated reefs, including globally threatened humphead Maori wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum). Length distributions of fish differed among habitats at the Rowley Shoals, suggesting differences in ontogenetic shifts among species. The Cocos (Keeling) Islands typically had larger‐bodied predatory species than at the Rowley Shoals. Differences in geomorphology, lagoonal habitats, and fishing history likely contribute to the differences among remote reefs. Rowley Shoals is a rare example of a reef system demonstrating ecological stability in reef fish assemblages during a time of unprecedented degradation of coral reefs.     

Environmental changes reflected by palynomorphs in the early Middle Ordovician Hanadir Member of the Qasim Formation, Saudi Arabia

Core samples from the QASIM-801 (QSIM-801) water well in the Qasim Region of central Saudi Arabia were investigated palynologically. The interval studied contains the transgressive succession from the Sajir Member of the Saq Formation to the Hanadir Member of the Qasim Formation, and yields well-preserved and abundant cryptospores, microphytoplankton (acritarchs and chlorophycean algae), and chitinozoans, indicative of a Darriwilian (Llanvirn) age. The lowermost portion of the cored interval from the upper Sajir Member consists of fine-grained sandstones deposited in tidal flat, and shallow-marine settings. It is characterized by abundant and diverse cryptospores (permanent tetrads, dyads, monads), cuticle-like phytoclasts, and a low diversity assemblage of marine palynomorphs. The upper part of the cored interval from the Hanadir Member is composed of hemipelagic to pelagic, organic-rich, graptolitic shales, and micaceous shales, of middle- to outer-shelf depositional settings, which yield abundant marine palynomorphs (acritarchs and chitinozoans). Cryptospore-bearing horizons are interspersed in the succession. Changes in the composition of palynomorph assemblages reflect higher frequency environmental changes within an overall transgressive succession. Four new acritarch species are described in open nomenclature, Tyrannus sp. A, Clypeolus sp. A,?Pulvinosphaeridium sp. A, and?Tinacula sp. A.     

黔西水城晚二叠世长兴期钙藻和有孔虫及其古环境意义

在黔西水城地区的K576井长兴组共鉴定钙藻3属3种,包括Gymnocodium bellerophontis、Permocalculus sp.和Tauridiumkurdistanensis;有孔虫8属10种,其中(虫筳)类2属2种,有孔虫动物群主要由Reichelinasp.indet.、Nankinella sp.、Pachyphloia schwageri、Pachyphloia sp.、Geinitzina sp.、Nestellorella sp. indet.、Howchinella sp.、Hemigordius aff. saranensis、Hemigordius sp.和Midiella sp. indet.组成。将本井按照生物特征分为有孔虫-钙藻-介形虫组合、有孔虫-腕足类-介形虫组合、介形虫-双壳类-腹足类组合、有孔虫-钙藻-双壳类组合、有孔虫-腕足类-介形虫组合、有孔虫-钙藻-双壳类组合和介形虫组合等7个组合。按照层序地层划分、垂向沉积序列特征和测井资料的分析,有孔虫-钙藻-介形虫组合(SQ3-3)和有孔虫-腕足类-介形虫组合(SQ3-4)时期地层为三角洲前...     

Phylogeography of <Emphasis Type="Italic">Eleotris fusca</Emphasis> (Teleostei: Gobioidei: Eleotridae) in the Indo-Pacific area reveals a cryptic species in the Indian Ocean

Indo-Pacific insular freshwater systems are mainly dominated by amphidromous species. Eleotris fusca is a widespread one, its life cycle is characterised by a marine pelagic larval phase allowing the species to disperse in the ocean and then to recruit to remote island rivers. In the present study, the population structure of E. fusca over its Indo-Pacific distribution range (Western Indian Ocean to French Polynesia, Pacific Ocean) was evaluated. We analysed a section of mitochondrial COI of 557 individuals sampled from 28 islands to visualise the population structure. Haplotypes diversity (Hd) was between 0.458 and 1 and, nucleotide diversity (π) was between 0.001 and 0.02. Two distinct genetic groups appeared, one in the Indian Ocean and the other in the Pacific Ocean (F_ST mean?=?0.901; 5.2% average divergence). Given these results, complete mitogenomes (mtDNA) were sequenced and combined with the nuclear Rhodopsin (Rh) gene for a subset of individuals. The two phylogenetic trees based on each analysis showed the same genetic pattern: two different groups belonging to the Indian and the Pacific oceans (6.6 and 1.6% of divergence for mtDNA and Rh gene respectively), which supported species level differentiation. These analyses revealed the presence of two sister species confounded until present under the name of Eleotris fusca. One of them is cryptic and endemic of the Indian Ocean and the other one is the true E. fusca, which keeps, nevertheless, its status of widespread species.     

Herbivorous fish assemblages and herbivory pressure on Laamu Atoll, Republic of Maldives

While herbivory is recognized as a fundamental process structuring coral reef communities, herbivore assemblages and processes are poorly described for reefs in the Indian Ocean region. We quantified herbivorous fish assemblage structure (abundance and diversity) in Laamu Atoll, Republic of Maldives, in four reef habitat types: faro reef flats, faro reef slopes, inner and outer atoll reef slopes (20 sites in total). Herbivorous fish assemblages, representing a total of 30 species, grouped strongly by habitat type, with the highest absolute abundance observed on faro reef flats and lowest abundance on inside atoll rim reef slopes. Removal of Thalassia seagrass blades by ambient herbivore assemblages was used in a bioassay to assess relative herbivory pressure among four habitat types (eight sites). Also, at one site a choice herbivory assay was performed to assess herbivore preference among four benthic plants across three depth zones. Relative herbivory, as indicated by Thalassia assays, was highest on inside atoll rim reef slopes and lowest on outside atoll rim reef slopes. Thalassia consumption did not correspond to overall herbivorous fish abundance, but corresponded more closely with parrotfish abundance. In the choice assays, herbivores showed strong preferences among plant types and consumption of most plant types was higher at mid-depth than in the shallow reef flat or deep reef knoll zones.     

Wave and tidal flushing in a near-equatorial mesotidal atoll

Most of the atolls found worldwide are under microtidal regimes, and their circulation mechanisms are widely documented and well known. Here, we describe the flushing mechanisms of a small-sized mesotidal atoll, based on water-level, wave and current data obtained during two different periods (total of 60 d). Rocas is the only atoll in the South Atlantic Ocean and is built primarily of coralline algae. Two reef passages connect the atoll lagoon to the ocean. Synchronous current profilers were deployed at the two reef passages, one inside and one outside the atoll, to characterize the influence of tides and waves on the circulation. Results showed that wind waves drove a setup on the exposed side of the atoll and that currents were predominately downwind, causing outflow at both reef passages. Waves breaking on the windward side supplied water to the atoll causing the lagoon water level to rise above ocean water level, driving the outflow. However, unlike microtidal atolls, at Rocas Atoll the water level drops significantly below the reef rim during low tides. This causes the reef rim to act as a barrier to water pumping into the lagoon by waves, resulting in periodic activation of the wave pumping mechanism throughout a tidal cycle. As result, inflow occurs in the wider passage during 27% of each tidal cycle, starting at low tides and reversing direction during mid-flood tide when the water level exceeded approximately 1.6 m (while overtopping the atoll’s rim). Our findings show that tides play a direct role in driving circulation on a mesotidal atoll, not only by modulating wave setup but also by determining the duration of wave pumping into the lagoon.