Phenobarbital stimulation of housefly chromatin template activity

The effect of phenobarbital on the chemical composition and template activity for Escherichia coli RNA polymerase of housefly chromatin is examined. Chromatin isolated from the resistant Fc housefly strain after administration of phenobarbital has a much higher template activity as compared to control chromatin. The effect is minimal in a susceptible housefly strain. Phenobarbital treatment alters the composition of the RNA polymerase product which results in an increase of the $\text{(A + U)}\text{(C + G)}$ ratio with chromatin from the Fc strain as template, while the $\text{(A + G}\text{)}\text{(}\text{C + U)}$ and $\text{(A + U}\text{)}\text{(}\text{C + G)}$ ratios are decreased when chromatin of the susceptible strain is used.A substantial portion of the intracellular phenobarbital is physically bound to nuclei and microsomes, but most of it is associated with cytosolic macromolecules. Less than 0.2% is covalently bound to cellular macromolecules. Phenobarbital apparently binds to a small mol. wt cytosolic macromolecule(s) as shown by sucrose density gradient centrifugation and Sephadex G-25 column chromatography.     

Reconstitution of endogenous DNA synthesis in isolated nuclei and template activity of chromatin with respect to mode of inhibition by aphidicolin

We succeeded in reconstituting the endogenous nuclear DNA synthesis of the sea urchin. Endogenous DNA synthesis of isolated nuclei was reconstituted by mixing the salt-treated nuclei (chromatin exhibiting essentially no endogenous DNA synthesis) and the salt extract containing DNA polymerase-alpha. DNA synthesis in this reconstitution system showed a level of activity and a mode of inhibition by aphidicolin similar to those of the original isolated nuclei (noncompetitive with respect to dCTP). On the other hand, the inhibitory mode was competitive with respect to dCTP in DNA synthesis in the reconstituted system obtained from the chromatin and purified DNA polymerase-alpha, indicating that some other factor(s) in addition to DNA polymerase-alpha is necessary for the reconstitution with reference to the inhibitory mode of aphidicolin. We also studied the template activity of the chromatin. When chromatin was used as a template, inhibition by aphidicolin of DNA polymerase-alpha was noncompetitive and uncompetitive with respect to the template at high and low concentrations, respectively. Treatment of chromatin with 5 M urea gave urea-treated chromatin (nonhistone protein-deprived chromatin) and the extract (mainly nonhistone protein fraction). Inhibition by aphidicolin of DNA polymerase-alpha was uncompetitive with respect to the urea-treated chromatin. However, when chromatin reconstituted from the urea-treated chromatin and the extract was used as a template, the inhibitory mode by aphidicolin was similar to that with original chromatin, indicating that the nonhistone protein fraction contained factor(s) which modified the inhibitory mode of aphidicolin. Thus, the inhibitory mode of aphidicolin is a useful parameter for monitoring the resolution and reconstitution of endogenous DNA synthesis of isolated nuclei.     

Relationship between cell proliferation, chromatin template activity and accumulation of nuclear proteins

Trypsinization of confluent monolayers of WI-38 cells causes an extensive loss of nuclear proteins. The loss of nuclear proteins is restored only several hours after the cells have been replated at a lower density in 10% serum. When trypsinized fibroblasts are replated at a lower density in 10% serum, there is also a sustained progressive leading to DNA synthesis and cell division. If 0.3% serum is used instead of 10%, there is a modest increase in nuclear template activity, but not accumulation of nuclear proteins and no DNA synthesis or cell division.     

Isolation, fractionation and template activity of the continuously-condensed chromatin of Euglena gracilis

A technique for isolating whole chromatin from nuclei of the lower eukaryote Euglena gracilis is presented. This chromatin, which appears under the electron microscope as uniformly condensed fibers, can, nevertheless, be subfractionated into distinct heterochromatic and euchromatic fractions. The euchromatin, comprising about 14% of the total DNA of the nucleus, contains over 80 % of the total endogenous RNA polymerase activity measured. The K_m for this enzyme is higher than that found for prokaryotes, but falls in the range found for other eukaryotes. Stability constants, calculated from cation-chromatin binding data, suggest that internal carboxyl groups of chromosomal proteins, at least, are involved in the condensation of Euglena chromatin. The relationship between Euglena chromatin and that of higher eukaryotes is discussed.     

Isolation of a rat ventral prostate chromatin fraction exhibiting a singular melting profile

Rat ventral prostate chromatin, prepared by a gentle procedure in which marked shearing forces were avoided, was separated by sucrose gradient centrifugation into a quantitatively minor less dense (L) fraction, and 2 heavier components, (H₁) and (H₂). The (L) fraction, comprising 5–15 percent of the totäl chromatin DNA, had a unique melting profile, with a Tm_app. of 59°, compared to 82.5°, 85° and 80.5° for total, (H₁) and (H₂) chromatin. (L) chromatin has a number of other properties expected of “euchromatin”. This approach to the preparation of chromatin has been used successfully with other tissues such as liver.     

Nature of hydrocortisone-elicited amplification of template activity of liver chromatin.

The template efficiency of euchromatin region and number of RNA polymerase binding sites on this region of rat liver chromatin were significantly elevated at 3.5 h after administration of hydrocortisone to adrenalectomised rats. The euchromatin from the liver chromatin of horomone-treated rats was also found to have significantly increased levels of nonhistone proteins as compared to those in euchromatin fraction derived from adrenalectomised rats.     

Studies on Ehrlich ascites tumour cells: DNA synthesis,and template activity of chromatin for DNA polymerase

Summary Chromatin obtained from Ehrlich ascites cells on different days after cell inoculation has been assayed for its template activity with added DNA polymerase 1. We have found that the template activity is 2 times higher in 7–8 day cell chromatin than in 4-day chromatin. Studies with added polylysine indicate that this increase reflects an increase in initiation sites rather than in accessibility to the enzyme. We have measured the growth fraction, mitotic index and rate of DNA chain growth in the intact cells. The results show that there is a large decrease in growth fraction with age of tumour, the number of cells dropping out of cycle approximately doubling over the period studied. The overall rate of chain growth decreases in the later stages of growth but in a small proportion of cells there is an increase in rate with fewer replicons involved in DNA synthesis. We suggest that in the ascites cells there is a decrease in level of repair and replicative enzymes with age of tumour; this would account both for the increase in initiation sites in the chromatin DNA, for the decrease in number of cells in cycle and for the overall decreased rate of chain growth.     

Repressed template activity of chromatin of pea roots treated by aluminium

To determine the mechanism of aluminium toxicity in the pearoot, we investigated both the in vivo and in vitro effectsof aluminium on chromatin. The ratio of histone or non-histoneproteins to DNA in chromatin was slightly increased by aluminiumtreatment. However, chromatin with an rf of 0.086 (rf: molarratio of bound aluminium to DNA-phosphate) prepared from aluminiumtreated roots had template activity for RNA synthesis that washalf of the control. The template activity of the chromatintreated with aluminium in vitro decreases with increasing rfvalues. In vitro treatment of chromatin with aluminium altered the spectrophotometricproperties of chromatin, including the shift up in the absorptionof the region beyond 320 nm and the decrease in the ratio ofmaximum to minimum absorption, with increasing concentrationsof treated aluminium. The dialysis of DNA or histone againstan aluminium solution indicates that scarcely any binding ofaluminium to histone occurred, but the binding of aluminiumto DNA took place rapidly. ¹Nippon Shinyaku Co. Ltd., Minami-ku, Kyoto 601, Japan. (Received June 20, 1980; )