Candida sonckii sp. nov.

A new yeast species with basidiomycetous affinities is described as Candida sonckii Hopsu-Havu et al. It differs from C. fujisanensis and C. maris by growing with KNO₃ as nitrogen source, from C. vanderwaltii by its lower mol % G+C, lower maximum temperature for growth and failure to grow on D-arabinose and citrate.     

Two New Species of the Genus <Emphasis Type="Italic">Liparis</Emphasis> (Orchidaceae) from Korea Based on Morphological and Molecular Data

Two new species of Liparis Rich. (Orchidaceae) from Korea are described: Liparis yongnoana and Liparis pterosepala. Liparis yongnoana is similar to plants called as L. japonica and L. makinoana in having an anther cap with a beaked apex and a weakly reflexed labellum. However, L. yongnoana can be distinguished from them by a presence of a narrowly elliptic line on a labellum, a less emarginated apex of a more reflexed labellum, a short column, and a few flowers. L. pterosepala is similar to Liparis kumokiri, Liparis koreojaponica, and Liparis fujisanensis in having an anther cap with a mucronate apex and an excessively reflexed labellum. But L. pterosepala can be distinguished from the three similar taxa by its wide sepals and its early flowering time. Based on the molecular data using nuclear internal transcribed spacer (ITS) and cpDNA regions (matK, trnS-trnG, trnL with trnL-trnF), L. yongnoana has five autapomorphic substitutions in ITS region and four substitutions and one deletion in cpDNA. Another new taxon, L. pterosepala, has one autapomorphy in ITS and cpDNA regions, respectively. A molecular phylogeny also indicates that L. yongnoana is close to plants called as L. japonica and L. makinoana, and L. pterosepala is close to L. kumokiri, L. koreojaponica, and L. fujisanensis.     

Phylogeny and comparative seed morphology of epiphytic and terrestrial species of <Emphasis Type="Italic">Liparis</Emphasis> (Orchidaceae) in Japan

To elucidate the evolution of epiphytes in Liparis section Liparis, we examined the phylogenetic relationships of 16 species by using internal transcribed spacer regions of 18S–26S nuclear ribosomal DNA (ITS) and three chloroplast DNA regions (trnS-trnG spacer, trnL with trnL-trnF spacer, and partial matK). Results showed that the epiphytic L. fujisanensis is sister to the terrestrial L. koreana and L. kumokiri, while another epiphyte, L. truncata, is sister to the terrestrial L. krameri. Therefore, the two epiphytic species evolved from terrestrial species independently in section Liparis. Comparative seed morphology revealed that the epiphytes have larger embryos than their closely related terrestrial counterparts. A similar trend toward the increase of embryo size in the two epiphytic species belonging to closely related, but distinct clades suggests that the large embryo may have an advantage in the epiphytic lifestyle. The two epiphytic species share another character state, smaller air spaces in the seed than that of closely related terrestrial species, suggesting possible low dispersibility of the epiphytes. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

ASSESSING THE RELATIONSHIPS OF AUTOSPORIC AND ZOOSPORIC CHLOROCOCCALEAN GREEN ALGAE WITH 18S rDNA SEQUENCE DATA1

We examined the relationships of autosporic and zoosporic taxa in the Chlorococcales by analyzing available complete nuclear-encoded small-subunit (18S) rRNA gene sequences along with two new sequences from Hydrodictyon reticulatum (L.) Lagerh. and Neochloris vigenis Archibald. Some autosporic taxa grouped with the coenobial hydrodictyacean algae and related unicellular organisms having directly opposed basal bodies. These include Scenedesmus obliquus (Turp.) Kütz. and Chlorella fusca var. vacuolata Shihira et Krauss. Other autosporic organisms, including Chlorella kessleri Fott et Novakova, C. minutissima Fott et Novakova, C. pro-tothecoides Krug., C. vulgaris Beij., Nanochlorum eucaryotum Wilhelm, Eisenbeis, Wild, et Zahn, and Prototheca wickerhamii Soneda et Tubaki, form a separate group. Of the zoosporic taxa examined, this group would appear to have the greatest affinity to organisms having a counterclockwise displacement of basal bodies, the Pleurastrophyceae. Beyond the fact that Ankistrodesmus stipitatus (=A. falcatus var. stipitatus (Chodat) Lemm.) does not group with the latter organisms, its position remains in doubt. None of the autosporic taxa appear to be closely related to chlorophycean organisms possessing a clockwise basal body displacement.     

MOLECULAR PHYLOGENY AND PHENOTYPIC VARIATION IN THE HETEROTROPHIC GREEN ALGAL GENUS PROTOTHECA (TREBOUXIOPHYCEAE,CHLOROPHYTA)1

Species of the heterotrophic green microalgal genus Prototheca and related taxa were phylogenetically analyzed based on the nuclear small subunit (SSU) and the 5′ end of the large subunit (LSU) rRNA gene (rDNA) sequences. We propose restricting the genus Prototheca to the four species: P. moriformis Krüger, P. stagnora (Cooke) Pore, P. ulmea Pore, and P. zopfii Krüger. The main diagnostic feature of these taxa is the absence of growth on trehalose.Of these, it was suggested that P. moriformis should be merged into P. zopfii; P. moriformis and three varieties of P. zopfii constituted a paraphyletic assemblage with estimated short evolutionary distances. The trehalose‐assimilating strains (Prototheca wickerhamii Tubaki et Soneda strains and Auxenochlorella protothecoides (Krüger) Kalina et Pun?ochá?ová SAG 211‐7a), together with an invertebrate pathogen Helicosporidium sp., diverged before the radiation of the four species of Prototheca in the SSU rDNA and composite (SSU rDNA plus LSU rDNA) analyses. Comparison between the results from physiological data in this work (fermentative pattern) and those described earlier (growth requirements) lead us to propose a hypothesis that the phenotypic variation, which did not represent diagnostic characters for species delimitation, may reflect the history of genetic diversification within the genus Prototheca as inferred from rDNA sequence characters.     

Identification of a unicellular,non-pigmented alga that mediates growth inhibition in anuran tadpoles: a new species of the genus Prototheca (Chlorophyceae: Chlorococcales)

A non-pigmented, unicellular alga isolated from the faeces of British anuran tadpoles and which is associated with growth inhibition in these tadpoles, was described and identified using cytological, ultrastructural, nutrient assimilation and immunological studies. The alga possessed all the distinctive morphological features of the genus Prototheca, it grew weakly on Prototheca Isolation Medium (PIM), it required thiamine for continued growth and replication, and it could assimilate the five major substrates used to speciate the protothecans. All of these characteristics, together with previous nucleic acid hybridisation studies, indicated that the microorganism belonged to the genus Prototheca. There are currently five species recognised as valid (Pore, 1985 & 1986): Prototheca zopfii Kruger, 1884, P. wickerhamii Tubaki & Soneda, 1959, P. moriformis Kruger, 1884, P. stagnora Cooke, 1968 and P. ulmea Pore, 1986.The immunology showed that the new species was related to two of the protothecans, but overall it showed that the alga was antigenically distinct from the other protothecans tested in the immunoassay. This, together with its inability to grow strongly on PIM, its ability to assimilate a wide rage of carbon substrates and its ability to mediate growth inhibition in anuran tadpoles, indicated a new species of Prototheca. We therefore propose the name Prototheca richardsi sp. n.     

Cell-wall structure,mitosis and urease activity in Torulopsis species of high GC content

Five Torulopsis species, in which, characteristically, the mean molar percentage of guanine plus cytosine of the DNA bases (GC content) is above 50%, were examined to determine their cell-wall structure; the mode of bud formation; course of mitosis and their urease activity. The two urease-negative species, T. gropengiesseri (% GC 57.1) and T. silvatica (% GC 56.3), were found to possess affinitive properties which characterize perfect ascomycetous yeast species. In the urease-positive species, T. fujisanensis (% GC 65.0–66.1), T. ingeniosa (% GC 55.6) and T. philyla (% GC 63.9), there appeared to be a correlation between pronounced urease activity and the affinitive properties which characterize perfect basidiomycetous yeast species. Pronounced urease activity has, however, also been found in the ascomycetous species Schizosaccharomyces pombe. Consequently neither high GC ratios nor the presence of urease activity when considered individually, can be taken as reliable criteria when attempting to establish the affinity of yeasts the perfect states of which are not known, with the Basidiomycetes. A strain of the ascomycetous species Sclerotinia trifoliorum was examined by electron microscopy for comparative purposes.     

Suitability of Selected Bacteria and Yeasts for Growing the Estuarine Heterotrich Ciliate Fabrea salina (Henneguy)1

ABSTRACT. Twenty-six species of bacteria and seven species of yeasts were aseptically presented separately as potential food sources to the estuarine heterotrich ciliate, Fabrea salina, under standardized conditions of cell number, medium, and temperature. The bacteria and yeasts were classified according to their effect on the intrinsic growth rate of the ciliate: Nutritious bacteria: Photobacterium fisherii, Vibrio neresis, V. natriegens, Flavobacterium sp. strain ASN16, V. harveyi, Xanthomonas sp. strain ASN22; Maintainer bacteria: V. vulnificus, Vibrio sp. strain V344, V. alginolyticus, V. anguillarum, Bacillus sp. strain ST₃32B₂, Vibrio sp. strain V415, Acinetobacter sp. strain BHT8, Flectobacillus marinus, and Enterobacter aerogenes; Maintainer yeasts: Candida albicans and Cryptococcus marcerans strain 2; Nonnutriuous bacteria: V. parahaemolyticus, Planococcus sp. strain ASN13, P. mandapapanensis, Hyphomicrobium vulgari, Pseudomonas sp. strain CNS1, an unidentified gram-negative, yellow-pigmented, motile bacillus strain IG9A2, Thiobacillus thioparus, Escherichia coli, Corynebacterium sp. strain BR 17, Achromobacter sp. strain 23030, and Oceanospirillum beijerinckii; Nonnutriuous yeasts: C. marcerans strain 1, Saccharomyces cerevisiae, Debaryomyces hansenii, an unidentified black yeast, and C. laurentii. Under the conditions specified, bacteria appear to have a certain minimal value for the growth of Fabrea while yeast have little to none.     

Hydrogen uptake in Nostoc sp. strain PCC 73102. Cloning and characterization of a hupSL homologue

Structural genes encoding an uptake hydrogenase of Nostoc sp. strain PCC 73102 were isolated. From partial libraries of genomic DNA, two clones (pNfo01 and pNfo02) were selected and sequenced, revealing the complete sequence of both a hupS (960 bases) and a hupL (1,593 bases) homologue in Nostoc sp. strain PCC 73102. A comparison between the deduced amino acid sequences of HupS and HupL of Nostoc sp. strain PCC 73102 and Anabaena sp. strain PCC 7120 showed that the HupS proteins are 89% identical and the HupL proteins are 91% identical. However, the noncoding region between the genes in Nostoc sp. strain PCC 73102 (192 bases) is longer than that of Anabaena sp. strain PCC 7120 and of many other microorganisms. Southern hybridizations using DNA from both N₂-fixing and non-N₂-fixing cells of Nostoc sp. strain PCC 73102 and different probes from within hupL clearly demonstrated that, in contrast to Anabaena sp. strain PCC 7120, there is no rearrangement within hupL of Nostoc sp. strain PCC 73102. Indeed, 6 nucleotides out of 16 within the potential recombination site are different from those of Anabaena sp. strain PCC 7120. Furthermore, we have recently published evidence demonstrating the absence of the bidirectional/reversible hydrogenase in Nostoc sp. strain PCC 73102. The present knowledge, in combination with the unique characteristics, makes Nostoc sp. strain PCC 73102 an interesting candidate for the study of deletion mutants lacking the uptake-type enzyme. Received: 20 August 1997 / Accepted: 24 November 1997     

Nutritional interdependence betweenThermoanaerobacter thermohydrosulfuricus andClostridium thermocellum

Thermoanaerobacter thermohydrosulfuricus strain YM3 and Clostridium thermocellum strain YM4, obtained originally as a stable coculture, required yeast extract to grow separately. Cell-free broths of T. thermohydrosulfuricus strain YM3 and C. thermocellum strain YM4 monocultures replaced yeast extract in supporting the growth of strains YM4 and YM3, respectively. T. thermohydrosulfuricus strain YM3 produced vitamin B₆, B₁₂ analog(s), p-aminobenzoic acid and folic acid, which were required by C. thermocellum strain YM4. Likewise, strain YM4 produced niacin-active compound(s), thiamine, and methionine required by strain YM3. Received: 17 March 1995 / Accepted: 27 March 1995     

Photoreactivation in the genus Bacillus

Photoreactivation of ultraviolet radiation-induced DNA damage was examined in exponential-phase cells of six mesophilic species of the genus Bacillus. Under the experimental conditions used, it was observed that the laboratory strains B. cereus strain T and B. thuringiensis var. thuringiensis strain NRRL-B4039 exhibited strong photoreactivation (86-fold and 70-fold respectively). Bacillus licheniformis strain ATCC 8480 exhibited moderate (15-fold) photoreactivation. Weak photoreactivation was observed in B. subtilis strain 168 (4-fold) and B. megaterium strain QM B1551 (3.4-fold). Bacillus amyloliquefaciens strain H demonstrated no detectable photoreactivation.     

Efficiency of insecticidal crystal protein production in a Bacillus thuringiensis mutant with derepressed expression of the terminal oxidase aa 3 during sporulation

A Bacillus thuringiensis respiratory mutant (AB1 strain) that shows premature sporulation and insecticidal crystal protein (ICP) production was isolated. The mutant strain harbours the cryIC and cryID insecticidal genes and could be important for the production of ICP highly toxic to Spodoptera sp. The mutant was selected by its increased capacity to oxidize. N,N,N',N'-tetramethyl-p-phenylenediamine (TMPD). In this strain, cytochrome aa ₃ expression is not repressed during the sporulation phase, in contrast with the wild-type strain. The growth, spore production, dissolved O₂, O₂ consumption, CO₂ evolution rate and ICP production were recorded as a function of time. The AB1 mutant strain has a similar growth yield to the wild-type strain, but begins sporulation at least 4 h earlier. The AB1 strain consumes 74.5% more O₂ than the wild-type strain, during the fermentation process. The mutation on strain AB1 has an important positive effect on ICP production. This procedure shows that ICP production could be increased during fermentation by increasing the respiration capacity of Bacillus thuringiensis. Correspondence to: A. Bravo     

Comparisons of Characteristics of Mercury-Tolerant Bacterium Pseudomonas oleovorans G-1 and Its Mercury-Sensitive Mutant Strain

An Hg²⁺-sensitive mutant strain was isolated from an Hg²⁺-tolerant bacterium Pseudomonas oleovorans G-1 strain by mutagenesis with N-methyl-N′-nitro-N-nitrosoguanidine. The Hg²⁺-sensitive mutant strain was about 10-times as sensitive to Hg²⁺ as the parent strain. Moreover, the mutant strain was considerably more sensitive to Cr⁶⁺ than the parent strain, but it did not show an appreciable change in sensitivity to Cd²⁺ and Cu²⁺. The mutant strain was considerably more sensitive to antibiotics achromycin, chloramphenicol and streptomycin than the parent strain. A more rigid structure was observed in the cell envelope of the mutant strain than the parent strain under transmission electron microscope. Higher amounts of DNA but less protein and RNA were found in the mutant strain compared to the parent strain. Disc electrophoretic patterns showed some differences in protein bands between the parent and mutant strain.     

Construction of a trivalent candidate vaccine against Shigella species with DNA recombination

In this work asd gene of Shigella flexneri 2a strain T32 was replaced by Vibrio cholerae toxin B subunit (ctxB) gene with DNA recombination in vivo and in vitro. The resulting derivative of T32, designed as FWL01, could stably express CtxB, but its growth in LB medium depended on the presence of diaminopimelic acid (DAP). Then form I plasmid of Shigella sonnei strain S7 was labeled with strain T32 asd gene and mobilized into FWL01. Thus a trivalent candidate oral vaccine strain, designed as FSW01, was constructed. In this candidate strain, a balanced-lethal system was constituted between the host strain and the form I plasmid expressing S. sonnei O antigen. Therefore the candidate strain can express stably not only its own O antigen but also CtxB and O antigen of S. sonnei in the absence of any antibiotic. Experiments showed that FSW01 did not invade HeLa cells or cause keratoconjunctivitis in guinea pigs. However, rabbits immunized FSW01 can elicit significant immune responses. In mice and rhesus monkey models, vaccinated animals were protected against the challenges of wild S. flexneri 2a strain 2457T and S. sonnei strain S9.     

The catalase gene differentiates between some strains of <Emphasis Type="Italic">Staphylococcus aureus</Emphasis> ssp. <Emphasis Type="Italic">anaerobius</Emphasis>

Staphylococcus aureus ssp anaerobius strain S10 was isolated from an outbreak of sheep abscess disease. Sequence of the catalase gene of this strain showed 99 % identity to the catalase gene (katB) sequence of the reference strain (S. aureus ssp. anaerobius strain MVF213) with mismatching of three base pairs. An important substitution located 1036 nucleotides upstream of the initiation codon from “C” in katB to “T” in the catalase gene of strain S10 originated a stop codon. The deduced protein (345 amino acids) is 105 amino acids shorter than that of katB. Partial sequence of the catalase gene of other 8 local isolates in addition to another reference strain (DSM 20714/ATCC 35844) revealed the same mutations in all local (African) strains, whereas the sequence of the reference (European) strain was typical to that of katB. Sequence of the catalase gene of S. aureus ssp. anaerobius strain S10 was deposited in GenBank under accession no. EU281993.     

Comparison of invasion of fibroblasts and macrophages by high- and low-virulence Leptospira strains: colonization of the host-cell nucleus and induction of necrosis by the virulent strain

The infection cycle of low- and high-virulence strains of Leptospira interrogans was compared in fibroblasts and macrophages. L. interrogans serovar Lai strain Lai was used as a representative high-virulence strain, while L. interrogans serovars Pomona strain Luo was used as a low-virulence strain. L. biflexa serovar Patoc strain Patoc I, a nonparasitic strain of Leptospira, was used as a control. Both the high- and low-virulence strains could adhere to fibroblasts and macrophages using one or both ends of the spirochete, which was followed by phagocytosis of both strains. Both strains adhered more strongly to macrophages than fibroblasts. However, the high-virulence strain could invade the host-cell nucleus, while the low-virulence strain remained in phagosomes. The L. biflexa strain neither adhered to nor invaded either cell type. Both of the L. interrogans strains also induced cell death (mostly necrosis) of macrophages, whether or not the spirochetes were viable, suggesting that leptospiral virulence is unrelated to macrophage death. However, the high-virulence strain induced mainly necrosis in fibroblasts, while the low-virulence strain induced more apoptosis. Thus, the main feature distinguishing the two L. interrogans strains is the ability of the high-virulence strain to invade the host-cell nucleus and induce pro-inflammatory necrosis in fibroblasts.     

New haplotype and inter‐strain reproductive compatibility of Wolbachia‐uninfected alfalfa weevil,Hypera postica (Coleoptera: Curculionidae), in Japan

Hypera postica is a univoltine invasive pest of alfalfa, Medicago sativa, in North America. In Japan, H. postica was first found in 1982 from Fukuoka and Okinawa Prefectures and became a serious pest of Chinese milk vetch, Astragalus sinicus, cultivated as a honey source for humans and green manure for rice. In North America, three strains, Western, Eastern and Egyptian, have been identified and the Western strain is infected with Wolbachia, which causes complete inter‐strain reproductive incompatibility. In contrast, only Western and Egyptian strains had been reported throughout Japan and none of the Western strain examined for the Fukuoka populations in northern Kyushu was infected with Wolbachia. First, we screened populations from northern Kyushu collected since 1982 for geographical and chronological distribution of the Eastern strain. The Eastern strain has been found at low frequencies since 1985 and is still present in 2014. Second, we experimentally tested our hypothesis that inter‐strain crosses between uninfected Western‐strain males and Egyptian‐strain females should produce viable offspring. We crossbred virgin adults reared individually from field‐collected larvae and confirmed that the F₁ eggs of crosses between the Western‐strain males and the Egyptian‐strain females develop successfully into larvae.     

Comparative analysis of the genomes of <Emphasis Type="Italic">Bombyx mandarina</Emphasis> and <Emphasis Type="Italic">Bombyx mori</Emphasis> nucleopolyhedroviruses

The Bombyx mandarina nucleopolyhedrovirus (BomaNPV) S1 strain can infect the silkworm, Bombyx mori, but is significantly less virulent than B. mori nucleopolyhedrovirus (BmNPV) T3 strain. The complete nucleotide sequence of the S1 strain of BomaNPV was determined and compared with the BmNPV T3 strain. The circular, double stranded DNA genome of the S1 strain was 126,770 nucleotides long (GenBank accession no. FJ882854), with a G+C content of 40.23%. The genome contained 133 potential ORFs. Most of the putative proteins were more than 96% identical to homologs in the BmNPV T3 strain, except for bro-a, lef-12, bro-c, and bro-d. Compared with the BmNPV T3 strain, however, this genome did not encode the bro-b and bro-e genes. In addition, hr1 lacked two repeat units, while hr2L, hr2R, hr3, hr4L, hr4R, and hr5 were similar to the corresponding hrs in the T3 strain. The sequence strongly suggested that BomaNPV and BmNPV are variants with each other, and supported the idea that baculovirus strain heterogeneity may often be caused by variation in the hrs and bro genes.     

Highly Toxic and Broad-Spectrum Insecticidal Bacillus thuringiensis Engineered by Using the Transposon Tn917 and Protoplast Fusion

The chromosome of the Bacillus thuringiensis strain S184 that was toxic against the third instar larvae of Spodoptera litura with the LC₅₀ of 9.74 μg/ml was successfully integrated into two genes of cyt1Aa and cry11Aa using the transposon Tn917, yielding the primary engineered strain TnX. The strain TnX was highly toxic to the third instar larvae of Culex pipiens fatigans with the LC₅₀ of 5.12 ng/ml which was 1.82-fold higher than that of B. thuringiensis subsp. israelensis, but lowly toxic to lepidopterous larvae. By the protoplast fusion of the strain TnX and the strain S184-Tet^r (resistance to tetracycline), the target engineered strain TnY was obtained. Against the third instar larvae of S. litura, the strain TnY LC₅₀ was of 4.68 μ g/ml and increased by 2.08-fold in comparison with the parent strain S184. Against the third instar larvae of C. pipiens fatigans, the strain TnY LC₅₀ was of 103.20 ng/ml. The two target genes of cyt1Aa and cry11Aa integrated into the chromosome were extremely stable and had little possibility of a second transposition. It was unclear whether some factors existing in the parent strain, S184, contributed to the high toxicity of the strains TnX and TnY. Received: 30 November 2000 / Accepted: 10 January 2001