Why does phenology drive species distribution?

Despite the numerous studies which have been conducted during the past decade on species ranges and their relationship to the environment, our understanding of how environmental conditions shape species distribution is still far from complete. Yet, some process-based species distribution models have been able to simulate plants and insects distribution at a global scale. These models strongly rely on the completion of the annual cycle of the species and therefore on their accomplished phenology. In particular, they have shown that the northern limit of species'' ranges appears to be caused mainly by the inability to undergo full fruit maturation, while the southern limit appears to be caused by the inability to flower or unfold leaves owing to a lack of chilling temperatures that are necessary to break bud dormancy. I discuss here why phenology is a key adaptive trait in shaping species distribution using mostly examples from plant species, which have been the most documented. After discussing how phenology is involved in fitness and why it is an adaptive trait susceptible to evolve quickly in changing climate conditions, I describe how phenology is related to fitness in species distribution process-based models and discuss the fate of species under climate change scenarios using model projections and experimental or field studies from the literature.     

Does the negative binomial distribution add up?

The negative binomial distribution (NBD) is widely used to describe the distribution of parasitic helminths in a number of host individuals and has proved a useful, though possibly overused, empirical and theoretical device. It is therefore important that the limits to the applicability of the NBD be clearly defined. In this paper, Alan Grafen and Mark Woolhouse consider applications of the NBD in situations where either the host or parasite population can be divided into subpopulations of different types (eg. by age, sex or genotype), and they describe the relationships between the frequency distributions relevant to the different subpopulations and those relevant to the total population.     

Monthly distribution of multiple sclerosis patients’ births

 As part of an integrated geographical and environmental epidemiological study of multiple sclerosis (MS) in Budapest’s Pesterzsébet district, many biometeorological variables were specifically examined. Also, the monthly distribution of birthdates of MS patients resident in the district was plotted. Patients reliably diagnosed with MS were found to have been born in greater numbers in the months of April and October, precisely 6 months apart. This finding indicates the presence of natural non-genetic factors in the creation of MS susceptibility, affecting the nervous system at the crucial time of myelination. Received: 25 March 1996 / Revised: 30 August 1996 / Accepted: 18 September 1996     

Uneven distribution of α-naphthyl acetate in tissues

Summary In the mouse ear in which esterases had been inactivated with warm formol the distribution of -naphthyl acetate was studied by an UV absorption technique. The substrate was found to concentrate in structures containing lipids. The physicochemical properties of substrates used in enzyme chemistry seem to be such that it might prove difficult to find any substrate that would distribute evenly in tissues. So far it does not seem to have been ruled out that this influences enzyme reactions by some mass law effect.

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Zusammenfassung Die Verteilung von -Naphthylazetat wurde mit Hilfe einer UV Absorptionstechnik in einem Mausohr untersucht, in dem die Esterasen mit heißem Formol inaktiviert worden waren. Das Substrat konzentrierte sich in lipoid-haltigen Strukturen. Die physikalisch-chemischen Eigenschaften histochemischer Enzym substratescheinen derartig zu sein, daß es schwer fallen dürfte, ein Substrat zu finden, das sich in den Geweben gleichmäßig verteilen würde. Bis aufs weitere scheint es durchaus nicht ausgeschlossen zu sein, daß dies Enzymreaktionen durch irgendein Massenwirkungsgesetz beeinflußt.

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Aided by a grant from Sigrid Jusélius Foundation.     

Unequal competitor ideal free distribution in fish?

Key predictions of unequal competitor ideal free distribution models were tested using a continuous input situation. Ten individually identifiable cichlid fish competed for food items at either end of their tank. Their distribution fitted the predictions of the equal competitor, continuous input ideal free model almost perfectly. However, examination of individual intakes revealed significant variation in individual success and relative competitive ability between patches. Contrary to expectations, fish did not exclusively use the patch where their intake was higher, although individuals experiencing greater differences in intake rate between patches were more selective. We found no evidence for a truncated distribution or even a correlation between competitive ability and patch quality. Changing the input regime to reduce competition did not produce a decrease in the range of intake rates between individuals. This study indicates the value of future empirical and theoretical work on how relative competitive ability varies with the nature of the foraging environment.     

Polyoxirane distribution in aPhanerochœte chrysosporium culture

Polyoxirane (polyoxyethylene) and some of its derivatives stimulate the lignin peroxidase activity in shakenPhanerochœte chrysosporium cultures. The majority of polyoxirane remains in the culture fluid while a minor part diffuses into the fungal pellets where it is distributed between cell solids and cell liquid. The lower the polyoxirane content in the cell liquid, the higher the lignin peroxidase activity of theP. chrysosporium culture.     

Mediterranean pine and oak distribution in southern Spain: Is there a mismatch between regeneration and adult distribution?

Questions: What is the current distribution of pine and oak species along environmental gradients in southern Spain? Do pine and oak regeneration niches differ from the environmental niches of adults? Is oak species regeneration favoured under the canopy of pine forests? Location: Forest areas of Andalusia (～87 600 km², southern Spain). Methods: We compiled extensive forest inventory data to explore differences in abundance (basal area, m² ha^?1) patterns of adults (dbh >7.4 cm) and regeneration (dbh ≤7.4 cm) of five pine and five oak species. Canonical correspondence analysis (CCA) and generalized linear models were applied to explore species–environment relationships along climatic, edaphic, topographic and fire‐frequency gradients. Results: Both pines and oaks segregated along complex environmental gradients, with pines generally dominating in more severe (colder and drier) environments, while oaks dominated in milder, wetter winter areas. In 40‐55% of mature pine stands there was a lack of regeneration in the understorey, while in two oak species (Q. suber and Q. canariensis) 70% of stands did not show regeneration. Pine recruits were found at a higher frequency and abundance under the canopy of their congeners, whereas some oaks (Q. ilex) had greater regeneration under mixed pine–oak canopies. Conclusions: Climatic limitations and soil properties partly explained the regional distribution of pines and oaks. We found evidence for an upward shift of Q. ilex recruits towards areas with colder conditions in pine forests, which could be explained by a possible facilitative effect of the pine canopy on seedling establishment.     

DNA haplotype distribution in Algerian β thalassaemia patients

Summary An evaluation of thalassaemia mutations and the associated chromosomal haplotypes has been made among Algerian thalassaemic patients in this extended series. The major features of our findings are: (i) due to elevated proportion of consanguinity, the frequency of true homozygotes for a defect is high; (ii) Despite this high homozygosity within families, the number of molecular defects resulting in thalassaemia are very heterogeneous within this population. This is exemplified not only by the high heterogeneity of haplotypes and associated mutations, but also by the definition of several new haplotypes, among which two of them were found to be associated with novel mutations. Family studies have been performed in parallel to evaluate the degree of feasibility of antenatal diagnosis in this population.     

Rabbit β-glucuronidase. Subcellular distribution and immunochemical properties

1. The subcellular distribution of beta-glucuronidase and other hydrolases in rabbit liver was investigated. beta-Glucuronidase was found in both microsomal and lysosomal fractions. 2. Multiple forms of beta-glucuronidase were present in extracts of microsomal and lysosomal fractions. All forms were common to both fractions. 3. A specific antiserum against beta-glucuronidase was raised, and characterized by immunoprecipitation and affinity-chromatography procedures. 4. The immunological identity of the multiple forms in the pure beta-glucuronidase preparation, and the immunological identity of the beta-glucuronidase complement of lysosomal extracts with that of microsomal extracts, were demonstrated by means of the antiserum. The presence of inactive enzyme in various enzyme preparations was shown.     

How do species interactions affect species distribution models?

One of the most promising recent advances in biogeography has been the increased interest and understanding of species distribution models – estimates of the probability that a species is present given environmental data. Unfortunately, such analyses ignore many aspects of ecology, and so are difficult to interpret. In particular, we know that species interactions have a profound influence on distributions, but it is not usually possible to incorporate this knowledge into species distribution models. What is needed is a rigorous understanding of how unmeasured biotic interactions affect the inferences generated by species distribution models. To fill this gap, we develop a general mathematical approach that uses probability theory to determine how unmeasured biotic interactions affect inferences from species distribution models. Using this approach, we reanalyze one of the most important classes of mechanistic models of competition: models of consumer resource dynamics. We determine how measurements of one aspect of the environment – a single environmental variable – can be used to estimate the probability that an environment is suitable with species distribution models. We show that species distribution models, which ignore numerous facets of consumer resource dynamics such as the presence of a competitor or the dynamics of depletable resources, can furnish useful predictions for the probability that an environment is suitable in some circumstances. These results provide a rigorous link between complex mechanistic models of species interactions and species distribution models. In so doing they demonstrate that unmeasured biotic interactions can have strong and counterintuitive consequences on species distribution models.     

How does mutation affect the distribution of phenotypes?

The potential for mutational processes to influence patterns of neutral or adaptive phenotypic evolution is not well understood. If mutations are directionally biased, shifting trait means in a particular direction, or if mutation generates more variance in some directions of multivariate trait space than others, mutation itself might be a source of bias in phenotypic evolution. Here, we use mutagenesis to investigate the affect of mutation on trait mean and (co)variances in zebrafish, Danio rerio. Mutation altered the relationship between age and both prolonged swimming speed and body shape. These observations suggest that mutational effects on ontogeny or aging have the potential to generate variance across the phenome. Mutations had a far greater effect in males than females, although whether this is a reflection of sex‐specific ontogeny or aging remains to be determined. In males, mutations generated positive covariance between swimming speed, size, and body shape suggesting the potential for mutation to affect the evolutionary covariation of these traits. Overall, our observations suggest that mutation does not generate equal variance in all directions of phenotypic space or in each sex, and that pervasive variation in ontogeny or aging within a cohort could affect the variation available to evolution.     

What distribution function do life cycle inventories follow?

Purpose

Life cycle inventory (LCI) results are often assumed to follow a lognormal distribution, while a systematic study that identifies the distribution function that best describes LCIs has been lacking. This paper aims to find the distribution function that best describes LCIs using Ecoinvent v3.1 database using a statistical approach, called overlapping coefficient analysis.

Methods

Monte Carlo simulation is applied to characterize the distribution of aggregate LCIs. One thousand times of simulated LCI results are generated based on the unit process-level parametric uncertainty information, from each of which 1000 randomly chosen data points are extracted. The 1 million data points extracted undergo statistical analyses including Shapiro-Wilk normality test and the overlapping coefficient analysis. The overlapping coefficient is a measure used to determine the shared area between the distribution of the simulated LCI results and three possible distribution functions that can potentially be used to describe them including lognormal, gamma, and Weibull distributions.

Results and discussion

Shapiro-Wilk normality test for 1000 samples shows that average p value of log-transformed LCI results is 0.18 at 95 % confidence level, accepting the null hypothesis that LCI results are lognormally distributed. The overlapping coefficient analysis shows that lognormal distribution best describes the distribution of LCI results. The average of overlapping coefficient (OVL) for lognormal distribution is 95 %, while that for gamma and Weibull distributions are 92 and 86 %, respectively.

Conclusions

This study represents the first attempt to calculate the stochastic distributions of the aggregate LCIs covering the entire Ecoinvent 3.1 database. This study empirically shows that LCIs of Ecoinvent 3.1 database indeed follow a lognormal distribution. This finding can facilitate more efficient storage and use of uncertainty information in LCIs and can reduce the demand for computational power to run Monte Carlo simulation, which currently relies on unit process-level uncertainty data.

     

Subcellular distribution of β-amylase in developing barley endosperm

Protein bodies were isolated from maturing barley (Hordeum vulgare L. cv. Menuet) endosperm using sucrose density gradient centrifugation. Isolated protein bodies were not contaminated by other organelles such as mitochondria and microbodies, and contained a large amount of the barley storage protein, hordein, indicating that the protein bodies were prepared in high purity and were intact. Enzymatic and immunochemical analysis showed that β-amylase, which was previously thought to be localized in protein bodies, was not detected in the protein body fraction, but was found only in the cytosol fraction. The results show that β-amylase is synthesized as a cytosolic protein in maturing barley endosperm.     

Chimiotaxonomie des lycopodiales: distribution des alcaloïdes

The distribution of lysine-derived alkaloids in the genus Lycopodium (s.l.) supports the separation of the following taxa, Huperzia (= Urostachys), Lycopodiella s.l. (= Lepidotis, excl. L. volubile and L. deuterodensum) from Lycopodium s. str. Within the latter, the Fastigiatum group and the Complanata section (= Diphasiastrum) can be distinguished. The results obtained are in good agreement with the classification proposed by Wilce.     

How do macrophyte distribution patterns affect hydraulic resistances?

In eutrophic river systems, macrophytes attain high biomass with reduced drainage and increased flooding risk. To avoid these problems, water managers remove vegetation. Total removal, however, increases wash out of macro-invertebrate communities reducing the ecological value of rivers. Partial vegetation removal reduces this washout and prevents an increase in hydraulic resistance. In this, study the hydraulic performance of three partial vegetation removal patterns was tested. From the results it was seen that hydraulic resistance, expressed as Manning's n, was varying between 0.025 m^−1/3 s and 0.050 m^−1/3 s. Compared with the empty situation, the different distribution patterns increased resistance between 14 and 23%. Hydraulic resistance of these patterns was also significantly influenced by the species present in the vegetation patches. Three groups of macrophyte plants (emerged, floating leaved and submerged) with significantly different hydraulic resistances were determined. The emerged species Sparganium erectum generated the least resistance with an average friction of 0.03 m^−1/3 s. Stuckenia pectinata and Potamogeton natans had slightly higher friction values around 0.4 m^−1/3 s. Ranunculus penicillatus and Callitriche platycarpa had average friction values around 0.05 m^−1/3 s.The proposed vegetation removal patterns are good alternatives to create a management system, which minimally increases hydraulic resistance but still guarantees the ecological functions.     

Environmental gradients structure Daphnia pulex × pulicaria clonal distribution

The rarity of eukaryotic asexual reproduction is frequently attributed to the disadvantage of reduced genetic variation relative to sexual reproduction. However, parthenogenetic lineages that evolved repeatedly from sexual ancestors can generate regional pools of phenotypically diverse clones. Various theories to explain the maintenance of this genetic diversity as a result of environmental and spatial heterogeneity [frozen niche variation (FNV), general-purpose genotype] are conceptually similar to community ecological explanations for the maintenance of regional species diversity. We employed multivariate statistics common in community ecological research to study population genetic structure in the freshwater crustacean, Daphnia pulex × pulicaria. This parthenogenetic hybrid arose repeatedly from sexual ancestors. Daphnia pulex × pulicaria populations harboured substantial genetic variation among populations and the clonal composition at each pond corresponded to nutrient levels and invertebrate predator densities. The interclonal selection process described by the FNV hypothesis likely structured our D. pulex × pulicaria populations.     

Common and rare Swedish vertebrates — distribution and habitat preferences

Data have been compiled on the distribution, habitat preferences and population sizes of 348 vertebrates reproducing in Sweden (excluding fish) and their species richness in different habitats and regions was investigated. Furthermore, we compared the habitat preferences and distribution of rare and common vertebrates. The relative species number (corrected for area) increases from the north (the hemiarctic/boreal zone) to the south (the temperate/hemiboreal zone). The relative number of species in major habitats is highest in farmland, lakes and running waters, and possibly also in the sea. However, the absolute number of species is highest in woodland, the dominant habitat in Sweden (56% of the land area excluding sea). Within woodlands, a large proportion of species occur in southern deciduous forests, in other deciduous forests and in mixed forests, while coniferous forests are less species-rich when the habitat area is taken into account. In farmland, the most species-rich habitats are meadows and forest edges, while marshes are the most species-rich habitats amongst lakes and running waters. Nationally rare species (<1000 individuals) have a smaller European range than common species, and they also have their European distribution centres further to the south than the common species. Of the species occurring in large parts of Sweden (that is, both in the north and the south) a low proportion (4.7%) are classified as rare compared with species occurring mainly in the north (20.6% rare) or mainly in the south (31.6% rare) of Sweden. There is a positive correlation between the number of rare species and the total species number in 41 subcategory habitats, and the proportion of rare species is similar in most habitats. A more detailed analysis (including effects of both regions and habitats) suggests that the proportion of rare species in a region is a result of differences between latitudes, but also of different habitats (when corrected for latitude effects). There are differences in the proportion of rare species between the nine most species-rich orders (for example, there is a high proportion of rare species in the order Carnivora and a low proportion in the order Rodentia), but the proportion of rare species in these orders is not independent of the habitats in which they occur, making it difficult to separate the effects of habitat preferences and taxonomy on rarity. The focusing of conservation work on relatively species-rich habitats in southern and middle Sweden — such as some farmland habitats (that is, meadows and forest edges), marshes (in connection with lakes and running waters) and forests with a relatively high proportion of deciduous trees — is of high priority if the conservation of biodiversity is a main goal. These are also the habitats with a high number of rare and red-listed species.