Reef demise and back-stepping during the last interglacial, northeast Yucatan

The elevation of reefs and coastal deposits during the last Interglaciation (MIS-5e) indicates that sea level reached a highstand of as much as 6 m above the present, but it is uncertain how rapidly this level was attained and how it impacted reef development. To investigate this problem, I made a detailed sedimentological analysis of a well-dated reef from the northeast coast of the stable Yucatan Peninsula. Two linear reef tracts were delineated which are offset and at different elevations. The lower reef tract crops out along northern shore for 575 m and extends from below present mean sea level to +3 m. The reef crest facies consists of large Acropora palmata colonies dispersed within a coral boulder-gravel and is flanked by an A. cervicornis-dominated reef-front and a large area of lagoonal framework formed by coalesced patches of A. cervicornis and Montastraea spp. Constituents in the upper centimetre of the lower tract are heavily encrusted by a cap of crustose corallines and, in places, are levelled by a discontinuous marine-erosion surface. The upper reef tract crops out ~150 m inland up to an elevation of +5.8 m and parallels the southern section of shore for ~400 m. It also consist of an A. palmata-dominated crest facies flanked by reef-front, back-reef and lagoonal frameworks. In this case, however, lagoonal frameworks are dominated by a sediment-tolerant assemblage of branching coralline algae. Also different is the lack of encrustation by corallines, and the infiltration of upper tract facies by beach-derived shell-gravels from regressive shoreface deposits above. These results indicate that the lower reef tract and lagoonal patch-reefs formed at a sea level of +3 m. Final capping by crustose corallines and discontinuous marine erosion indicates that the lower tract was terminated by the complete demise of corals on the crest but only patchy demise in the lagoon. Areas of continuous framework accretion between the lagoonal patch reefs and the upper reef-tract, however, require that the demise of this reef was ecologically synchronous with initiation of the upper reef-tract, which had back-stepped 100 m into the lagoon. In this new position, the upper tract developed a reef crest that corresponded to a final sea-level position of +6 m. Reef flat development at +5 m and large in-place colonies of A. palmata at the base of the crest unit indicate, however, that sea level must have risen rapidly from +3 to more than +5 m to accommodate back-stepping. This sea-level jump created a higher energy wave field that mobilized back-reef and lagoonal sediments, and the resulting high sediment flux eroded lagoonal framework and prevented the recovery of the submerged lower reef crest. So this single jump in sea level was responsible not only for reef demise and back-stepping but also for marine erosion and suppression of subsequent reef development—features that elsewhere have been used to support multiple sea-level excursions during the last interglacial.     

The dynamics of benthic microbial communities at Davies Reef,central Great Barrier Reef

The dynamics of benthic microbial communities were examined within different functional zones (reef crest, reef flat, lagoon) of Davies Reef, central Great Barrier Reef, in winter. Bacterial numbers did not change significantly across the reef with a mean abundance of 1.3 (±0.6) x 10⁹ cells g^-1 DW of sediment. Bacterial production, measured as thymidine incorporation into DNA, ranged from 1.2 (±0.2) to 11.6 (±1.5) mg C m^-2h^-1 across the reef and was significantly lower in a reef crest basin than in the other zones. Bacterial growth rates () across the reef (0.05 to 0.33 g^-1) correlated only with sediment organic carbon and nitrogen. Protozoan and meiofaunal densities varied by an order of magnitude across the reef and correlated with one or more sediment variables but not with bacterial numbers or growth rates. Nutrient flux rates were similar to those found at other reefs in the central and southern Great Barrier Reef and are significantly lower than rates measured in temperate sand communities. In the front lagoon, bioturbation and feeding acitivity by thalassinid shrimps (Callianassa spp.) negatively influenced microbial and meiofaunal communities with a net import of organic matter necessary to support the estimated rates of bacterial productivity. In lagoonal areas not colonized by shrimps, primary productivity (400–1100 mg C m^-2d^-1) from algal mats was sufficient to support bacterial growth. It is suggested that deposit-feeding macrobenthos such as thalassinid crustaceans play a major role in the tructuring and functioning of lower trophic groups (bacteria, microalgae, protozoa, meiofauna) in coral reef sedments, particularly in laggons.     

Predicting the Location and Spatial Extent of Submerged Coral Reef Habitat in the Great Barrier Reef World Heritage Area,Australia

Aim

Coral reef communities occurring in deeper waters have received little research effort compared to their shallow-water counterparts, and even such basic information as their location and extent are currently unknown throughout most of the world. Using the Great Barrier Reef as a case study, habitat suitability modelling is used to predict the distribution of deep-water coral reef communities on the Great Barrier Reef, Australia. We test the effectiveness of a range of geophysical and environmental variables for predicting the location of deep-water coral reef communities on the Great Barrier Reef.

Location

Great Barrier Reef, Australia.

Methods

Maximum entropy modelling is used to identify the spatial extent of two broad communities of habitat-forming megabenthos phototrophs and heterotrophs. Models were generated using combinations of geophysical substrate properties derived from multibeam bathymetry and environmental data derived from Bio-ORACLE, combined with georeferenced occurrence records of mesophotic coral communities from autonomous underwater vehicle, remotely operated vehicle and SCUBA surveys. Model results are used to estimate the total amount of mesophotic coral reef habitat on the GBR.

Results

Our models predict extensive but previously undocumented coral communities occurring both along the continental shelf-edge of the Great Barrier Reef and also on submerged reefs inside the lagoon. Habitat suitability for phototrophs is highest on submerged reefs along the outer-shelf and the deeper flanks of emergent reefs inside the GBR lagoon, while suitability for heterotrophs is highest in the deep waters along the shelf-edge. Models using only geophysical variables consistently outperformed models incorporating environmental data for both phototrophs and heterotrophs.

Main Conclusion

Extensive submerged coral reef communities that are currently undocumented are likely to occur throughout the Great Barrier Reef. High-quality bathymetry data can be used to identify these reefs, which may play an important role in resilience of the GBR ecosystem to climate change.     

Spatial, temporal and habitat-related variation in the abundance of large predatory fish at One Tree Reef, Australia

 Patterns of abundance of large piscivorous fish (>200 mm TL) were documented at two spatial and four temporal scales within the main lagoon of One Tree Reef on Australia’s Great Barrier Reef. Grouper (Serranidae), snapper (Lutjanidae) and wrasses (Labridae) were the most abundant large piscivores. On a large scale (hundreds of metres), patterns of predator abundance were consistently greater on the inner edge than centre of the lagoon over a range of temporal scales: days, weeks, months and years. On a small spatial scale (tens of metres), the abundance of large predatory fish was patchy. At both spatial scales, fish were consistently aggregated in particular areas and associated with specific structural features of the reef habitat. Predator abundance was high where live corals were predominant and the topography was more complex. Hence, predation pressure and its potential effects on the distribution and abundance of prey populations, both in time and space, may vary greatly within lagoonal environments. Accepted: 25 May 1997     

Coral reef ecosystems as a source of atmospheric CO2: evidence from PCO2 measurements of surface waters

 Precise measurements of the partial pressure of CO₂ (PCO₂) in oceanic and lagoonal surface waters from Palau Barrier Reef and Majuro Atoll were taken to ascertain the net effect of these coral reef systems on air-sea CO₂ exchange. PCO₂ in the surface water in the lagoon of Palau Barrier Reef and Majuro Atoll was 48 and 14 μatm higher than in the surrounding oceanic water, respectively. A total carbon dioxide vs. total alkalinity diagram indicates that calcification is mainly responsible for CO₂ evasion in these coral reef systems. Accepted: 31 March 1997     

Modelling wind driven circulation One Tree Reef,Southern Great Barrier Reef

A vertically integrated numerical model of wind-driven circulation at One Tree Reef is presented. The model is the numerical model SURGE developed originally to study tropical cyclone surge. Current data collected in the reef lagoon and over the reef flats is used to test the model's applicability. The reef topography has been modelled explicitly, rather than using an assumed reef shape, with a grid spacing of 150 m. The model corresponds well to the measured current behaviour. The greatest drawback to use of the model is that, at low tide, currents reverse with depth due to lagoon enclosure and a depth integrated model cannot produce water velocity depth profiles. The model can be used to predict current behaviour in strong wind conditions, such as during a cyclone, and to estimate net flows into and out of the lagoon.     

Sedimentation on three caribbean atolls: Glovers reef,lighthouse reef and turneffe Islands,belize

Summary The chief mode of carbonate sedimentation on the Belizean atolls Glovers Reef, Lighthouse Reef and Turneffe Islands is the accumulation of organically-derived particles. Variations in the distribution of the composition and grain-sizes of surface sediments, collected along transects across the atolls, are environmentally controlled. Two major sediment types may be distinguished. (1) Reef and fore reef sediments are dominated by fragments of coral, coralline algae andHalimeda. Mean grain-sizes range from 1–2 mm. (2) Back reef sediments contain more mollusk fragments, more fine-grained sediment (<125 μm) and appear to have fewerHalimeda fragments. In addition, sediments from inner platforms and shallow lagoonal parts of Glovers and Lighthouse Reefs comprise non-skeletal grains, namely fecal pellets. Sediments from lagoonal patch reefs may contain up to 20% coral fragments. Mean grain-sizes range from 0.1–1 mm and are finest on the inner platform and lagoon floor of the back reef environment. Within the reef and fore reef environments, it is not possible to distinguish sub-environments on the basis of textural and compositional differences of the sediments. Sediments from patch reefs contrast with those from back reef lagoons and inner platforms and are similar in terms of grain-sizes and compositions to reef and fore reef surface sediments. Non-skeletal grains forming in shallow parts of the back reef in Glovers and Lighthouse Reefs are interpreted to be indurated by interstitial precipitation of calcium carbonate from warm, supersaturated water flushing the sediment. The lack of hardened non-skeletal particles in the back reef sediments of Turneffe Islands is most probably due to the abundance of muddy, organic-rich sediment in the well-protected lagoon. Fine sediment is less permeable and organic films prevent cement overgrowth on particles.     

A geochemical model for coral reef formation

The conspicuous growth of a reef crest and the resulting differentiation of reef topography into a moat (shallow lagoon), crest and slope have long attracted the interest of scientists studying coral reefs. A geochemical model is here proposed for reef formation, taking into account diffusion-limited and light-enhanced calcification. First, to obtain data on net photosynthesis and calcification rates in the field, a typical coral community was cultured in situ on a reef flat. Using these data, equations including parameters for calcification were then developed and applied in computer simulations to model the development over time of reef profiles and the diffusion of carbon species. The reef topography simulated by the model was in general agreement with reef topography observed in nature. The process of reef growth as shown by the modeling was as follows. Increases in the shore-to-offshore gradients of the concentrations of carbonate species result from calcification by reef biota, giving a lower rate of growth on near-shore parts of the reef than on those further offshore. As a result, original topography is diversified into moat and reef crest for the first time. Reef growth on the reef crest is more rapid than in the inshore moat area, because more light is available at the crest. Reef growth on the near-shore side of the reef is further inhibited by damming of carbon-rich seawater on the seaward side of the reef by the reef crest. Over time, the topographic expression of the reef crest and moat becomes progressively more clearly defined by these geochemical processes.     

Spatial and temporal variation in predation on reef fishes by coral trout (Plectropomus leopardus,Serranidae)

The diet of coral trout Plectropomus leopardus (Serranidae) was studied over a two year period at One Tree Island, Great Barrier Reef, Australia. Rapid visual counts demonstrated that P. leopardus were most abundant on the reef slope habitat and inner edge of the enclosed lagoon. Few P. leopardus were found at sites from inner lagoon. It was hypothesized that diet would vary among habitats, times and size classes of coral trout. Ninety-two percent of P. leopardus that contained prey had consumed fish and 87% had only eaten fish. Many types of reef fish were taken by P. leopardus (e.g. Pomacentridae, Scaridae, Blenniidae and Labridae). Most pelagic prey (Clupeidae and Engraulididae) were taken on the reef slope, while some prey were solely or pimarily taken in the lagoon (e.g. Blenniidae and crustaceans). Most pelagic prey were taken on the reef slope in summer by P. leopardus>250 mm (SL). Plectropomus leopardus (<200 mm) from the lagoon had a higher proportion of invertebrates in the diet than fish from the reef slope. Plectropomus leopardus of all sizes ate small fish, while largest fish generally consumed largest prey (especially adult scarids and labrids). I argue that interactions among multiple species of prey and predators need more attention, because piscivores may respond to prey in different ways according to habitat type as well as the number and type of other prey types present. Furthermore, different sizes of fish (e.g. coral trout) may impact assemblages of prey in different ways.     

Site fidelity and homing behaviour in coral reef cardinalfishes

Tagged adult cardinalfishes Apogon doederlini , Cheilodipterus artus and Cheilodipterus quinquilineatus persisted to within an average of 36–79 cm of their initial resting positions within One Tree Reef lagoon for over 8 months in A. doederlini and over 16 months in C. artus and C. quinquilineatus . In addition, 56–81% of tagged fish displaced c. 1 km, and 33–63% of tagged fish displaced c. 2 km returned to their point of collection within 3 days. As cardinalfishes are often found densely aggregated at resting sites, their extended use of specific sites on reefs may represent a localized, predictable resource for predators and a significant source of spatial variation in nutrient input to reef systems via faeces.     

Benthic response to ammonium pulses in a tropical lagoon: implications for coastal environmental processes

In New Caledonia, the benthic communities living in the coral reef lagoon around Noumea city are subjected to regular shifts from oligotrophic conditions typical of lagoon waters to nutrient enrichment due to waste water inputs. The influence of ammonium pulses on microphytobenthos production was experimentally tested under varying light intensities in the vicinity of Noumea. Benthic oxygen, ammonium and silicon fluxes at the sediment-water interface were measured in situ using benthic enclosures. Three ammonium concentrations were tested. Gross primary production was doubled with a 13.8 μmol l⁻¹ ammonium concentration increase. Fitted PI curves showed that maximum production (F_max) was linearly related to ammonium concentration, but not the optimal irradiance (I_k). Silicon fluxes were characterized by dissolution in the absence of light, a process that declined with increasing illumination. These results were attributed to microphytobenthos activity, mainly diatoms that are nutrient-limited and strongly reactive to ammonium inputs. Production may result from a multiplication of cells, but migration up to the water sediment interface may also be involved. Oxygen consumption was also significantly influenced by ammonium concentration as a positive linear relationship with added ammonium concentration was established. Even during short-term experiments, ammonium enrichment stimulated photoautotrophic production, increasing the energy available to heterotrophs. Furthermore, microbenthic activities as well as nitrate production were increased by ammonia-oxidizing bacteria able to grow chemolithotrophically at the expense of oxygen. Therefore, in the study area, pulses of urban waste waters resulted in a decrease of plant-related autotrophy in benthic communities.     

MORPHOLOGY AND PHOTOSYNTHESIS OF CAULERPA (CHLOROPHYTA) IN RELATION TO GROWTH FORM

Morphological and photosynthetic performance were analyzed in species of the genus Caulerpa from an exposed coral reef and a sheltered reef lagoon. Morphological characters, such as distance between modules, number of modules, stolon branches and rhizoid clusters per centimeter of stolon, indicated a uniformity among species within a specific habitat. "Guerilla," or diffusive, growth forms were characteristic for lagoon species and "phalanx," or compact, growth forms for reef species. Differences in photosynthesis were found between Caulerpa species. Sun-tolerant species were found on the reef, and both sun- and shade-tolerant species were present in the lagoon. In the lagoon, shade-tolerant species, such as C. lanuginosa J. Agardh, were found growing in the understory, and sun-tolerant species, such as C. paspaloides (Bory) Greville, formed the canopy. C. cupressoides (West in Vahl) C. Agardh was the only species found in both environments; it showed higher photosynthetic rates and a compressed morphology when growing on the reef and lower photosynthetic rates and expanded morphology for lagoonal ramets. These results suggest that C. cupressoides possesses a broad phenotypic ability to acclimate to lagoonal and reef settings in comparison to other Caulerpa species, enhancing its ecological success in this particular system.     

Phytoplankton biomass and primary production in semi-enclosed reef lagoons of the central Great Barrier Reef,Australia

Phytoplankton biomass and primary production rates within semi-enclosed reef lagoons of the central Great Barrier Reef were compared with adjacent shelf waters. Chlorophyll concentrations and surface primary production rates were usually higher in lagoons although seasonal differences were only significant during the summer. Nitrate concentrations were higher in lagoons than in shelf waters year-round. Nano- (<20 m size fraction) or pico-phytoplankton (<2 m size fraction) dominated phytoplankton biomass and production within reef lagoons throughout the year. Net phytoplankton (>10–20 m size fraction), however, were relatively more important in both reef lagoons and open shelf waters during the summer. Biomass-specific production within lagoons (range 41–90 mg C mg chl^–1 day^–1) was high, regardless of season. Lagoonal phytoplankton production (range 0.2–1.6 g C m^–2 day^–1) was directly correlated with standing crop and inversely related to lagoon flushing rates. Phytoplankton blooms develop within GBR reef lagoons during intermittent calm periods when water residence times exceed phytoplankton generation times.     

Nutrient couplings between on-site sewage disposal systems,groundwaters, and nearshore surface waters of the Florida Keys

We performed a one-year study to determine the effects of on-site sewage disposal systems (OSDS, septic tanks) on the nutrient relations of limestone groundwaters and nearshore surface waters of the Florida Keys. Monitor wells were installed on canal residences with OSDS and a control site in the Key Deer National Wildlife Refuge on Big Pine Key. Groundwater and surface water samples were collected monthly during 1987 and analyzed for concentrations of dissolved inorganic nitrogen (DIN = NO_f3/sup- + NO_f2/sup- + NH_4/su+), soluble reactive phosphate (SRP), temperature and salinity. Significant nutrient enrichment (up to 5000-fold) occurred in groundwaters contiguous to OSDS; DIN was enriched an average of 400-fold and SRP some 70-fold compared to control groundwaters. Ammonium was the dominant nitrogenous species and its concentration ranged from a low of 0.77 μM in control wells to 2.75 mM in OSDS-enriched groundwaters. Concentrations of nitrate plus nitrite were also highly enriched and ranged from 0.05 μM in control wells to 2.89 mM in enriched groundwaters. Relative to DIN, concentrations of SRP were low and ranged from 30 nM in control wells to 107 μM in enriched groundwaters. N : P ratios of enriched groundwaters were consistently > 100 and increased with increasing distance from the OSDS, suggesting significant, but incomplete, adsorption of SRP by subsurface flow through carbonate substrata. Nutrient concentrations of groundwaters also varied seasonally and were approximately two-fold higher during the winter (DIN = 1035 μM; SRP = 10.3 μM) compared to summer (DIN = 470 μM; SRP = 4.0 μM). In contrast, surface water nutrient concentrations were two-fold higher during the summer (DIN = 5.0 μM; SRP = 0.50 μM) compared to winter (DIN = 2.5 μM; SRP = 0.15 μM). Direct measurement of subsurface groundwater flow rate indicated that tides and increased groundwater recharge enhanced flow some two-fold and six-fold, respectively. Accordingly, the observed seasonal coupling of OSDS-derived nutrients from groundwaters to surface waters is maximum during summer because of seasonally maximum tides and increased hydraulic head during the summer wet season. The yearly average benthic flux of anthropogenic DIN into contiguous canal surface waters is 55 mmol m^-2 day^-1, a value some five-fold greater than the highest rate of benthic N-fixation measured in carbonate-rich tropical marine waters.     

Nitrogen‐cycling bacteria and archaea in the carbonate sediment of a coral reef

In the coarse‐grained carbonate sediments of coral reefs, advective porewater flow and the respiration of organic matter establish redox zones that are the scene of microbially mediated transformations of N compounds. To investigate the geobiology of N cycling in reef sediments, the benthic microbiota of Checker Reef in Kaneohe Bay, Hawaii, were surveyed for candidate nitrate reducers, ammonifying nitrite reducers, aerobic and anaerobic ammonia oxidizers (anammox) by identifying phylotypes of their key metabolic genes (napA, narG, nrfA, amoA) and ribotypes (unique RNA sequences) of anammox‐like 16S rRNA. Putative proteobacteria with the catalytic potential for nitrate reduction were identified in oxic, interfacial and anoxic habitats. The estimated richness of napA (≥202 in anoxic sediment) and narG (≥373 and ≥441 in oxic and interfacial sediment, respectively) indicates a diverse guild of nitrate reducers. The guild of nrfA hosts in interfacial reef sediment was dominated by Vibrio species. The identified members of the aerobic ammonium oxidizing guild (amoA hosts) were Crenarchaeota or close relatives of Nitrosomonadales. Putative anammox bacteria were detected in the RNA pool of Checker Reef sediment. More than half of these ribotypes show ≥90% identity with homologous sequences of Scalindua spp., while no evidence was found for members of the genera Brocadia or Kuenenia. In addition to exploring the diversity of these four nitrogen‐cycling microbial guilds in coral reef sediments, the abundances of aerobic ammonium oxidizers (amoA), nitrite oxidizers (nxrAB), ammonifying nitrite reducers (nrfA) and denitrifiers (nosZ) were estimated using real‐time PCR. Representatives of all targeted guilds were detected, suggesting that most processes of the biogeochemical N cycle can be catalyzed by the benthic microbiota of tropical coral reefs.     

Reef Odor: A Wake Up Call for Navigation in Reef Fish Larvae

The behavior of reef fish larvae, equipped with a complex toolbox of sensory apparatus, has become a central issue in understanding their transport in the ocean. In this study pelagic reef fish larvae were monitored using an unmanned open-ocean tracking device, the drifting in-situ chamber (DISC), deployed sequentially in oceanic waters and in reef-born odor plumes propagating offshore with the ebb flow. A total of 83 larvae of two taxonomic groups of the families Pomacentridae and Apogonidae were observed in the two water masses around One Tree Island, southern Great Barrier Reef. The study provides the first in-situ evidence that pelagic reef fish larvae discriminate reef odor and respond by changing their swimming speed and direction. It concludes that reef fish larvae smell the presence of coral reefs from several kilometers offshore and this odor is a primary component of their navigational system and activates other directional sensory cues. The two families expressed differences in their response that could be adapted to maintain a position close to the reef. In particular, damselfish larvae embedded in the odor plume detected the location of the reef crest and swam westward and parallel to shore on both sides of the island. This study underlines the critical importance of in situ Lagrangian observations to provide unique information on larval fish behavioral decisions. From an ecological perspective the central role of olfactory signals in marine population connectivity raises concerns about the effects of pollution and acidification of oceans, which can alter chemical cues and olfactory responses.     

Potential modification of the fluxes of nitrogen from the Humber Estuary catchment (U.K.) to the North Sea in response to changing agricultural inputs and climate patterns

The catchment of the Humber Estuary drains approximately 20% of the land area of England via two main rivers, the Trent and the Ouse, and a number of tributaries. The catchment is home to major metropolitan and industrial centres, as well as to extensive areas of agricultural land; for this reason, the river and estuarine systems have been subject to considerable anthropogenic inputs. The Humber Estuary is one of the largest U.K. estuaries and the major U.K. freshwater input to the North Sea. The U.K. Natural Environment Research Council (NERC) Land Ocean Interaction Study (LOIS), which combined extensive physical and biogeochemical measurements with an integrated modelling programme, was established to examine the transport and fate of nutrients and other constituents through the land-sea boundary. In this paper, a model of nitrogen (nitrate, nitrite, ammonium, particulate nitrogen) transport and cycling in the Humber Estuary, calibrated on the basis of measured constituent concentrations at its riverine and marine boundaries, is linked off-line to a Humber catchment and rivers model of nitrogen transport, which furnished simulated constituent values at the tidal limits, and the resulting estuarine nitrogen profiles compared to those of the standalone estuarine model. The estuarine model is then re-run using simulated concentration values at the tidal limits from catchment-river model simulations incorporating realistic changes in agricultural fertiliser inputs and climate forcing functions. The standalone estuarine model simulation estimated nitrate+nitrite (total nitrogen) export to the North Sea to be ca. 53000 t in 1994 and 44000 t in 1995. Following linkage of the estuarine and catchment-river models, the estimated fluxes for these years increased by 20–30%, {relative to the standalone simulation}. Higher {winter} riverine flows largely accounted for this difference. The altered flows also markedly changed the simulated concentrations and distributions of suspended particulate matter (SPM) within the estuary, indicating strongly that the transport and fluxes of particle-reactive and particle-associated constituents would show measurable differences. Scatter in the measured SPM data precluded identification of the more precise simulation run, however. Subsequent simulations using the linked models estimated that a 50% reduction in artificial fertiliser applications within the catchment gave a 10–15% decrease in nitrogen loads to the North Sea, relative to the 1994–95 input, whilst forcing the catchment model with a climate perhaps appropriate for the mid-21st century yielded nitrogen fluxes that were similar to those of the mid-1990s.     

Nitrification on a coral reef.

We report that the algal pavement just behind the reef crest at Enewetak Atoll produces nitrate at measurable rates. In situ and in vitro incubations with N-Serve indicate that the autotrophic pathway involving two separate organisms is effective in this oxidation of ammonia to nitrate. Significant nitrification is indicated throughout the reef environment; Nitrobacter agilis has specifically been identified as at least one of the organisms responsible for the terminal oxidation of nitrite to nitrate.     

Nitrogen efflux from the sediments of a subtropical bay and the potential contribution to macroalgal nutrient requirements

The concentration of dissolved inorganic nitrogen (DIN) in the porewaters of shallow-water tropical marine sediments can be as high as 50-100 μM, at sediment depths of shallow as 20 cm. These concentrations are at least two-orders of magnitude greater than the DIN concentration in the overlying water. High porewater concentrations, and the resulting concentration gradient, result in substantial efflux of DIN from the sediments to the water column. This sediment-derived DIN may be an important nutrient source for benthic algae. In Kaneohe Bay, Hawaii, a mean ammonium efflux rate of 490 μmolm(-2)day(-1) and a mean nitrate+nitrite efflux rate of 123 μmolm(-2)day(-1) were measured on reef slopes in the habitat occupied by benthic algae. It has been demonstrated that this nutrient source is essential for the growth of at least one abundant alga, Dictyosphaeria cavernosa, and possibly others. The DIN concentrations in Kaneohe Bay sediment porewaters, and the rates of DIN efflux from those sediments, are greater than porewater concentrations and efflux rates reported for other, more pristine tropical sites. The rate of sedimentation of particulate nitrogen is similar to rates reported from other tropical lagoons, and about twice as high as the efflux rate of total dissolved nitrogen. Given the present low nutrient concentrations in the water column of the Bay, these results support the view that nutrient efflux from the benthos is in part responsible for the persistence of D. cavernosa on these reefs. It is possible that efflux of DIN from sediments may be responsible for sustained benthic algal productivity in similar habitats on other tropical reefs.     

Coral communities of barrier reefs of Vietnam

The composition and spatial distribution of the coral communities of the barrier reefs of Jiang Bo and of Re Island were described in detail for the first time for Vietnamese waters. Their comparability to the ribbon reefs of the Great Barrier Reef in Australia and to the barrier reefs of the Philippines and Indian Ocean was revealed by morphological parameters, species diversity and zonal distribution. Their geomorphological status, the presence of fore reef, epi-reef and back reef complexes with their specific composition of flora and fauna, and an obligatory lagoon separating the reef from fringing inshore reefs, enabled the attribution of the surveyed reefs to the barrier type of reef.