A new species of Croton (Euphorbiaceae) widespread in Mexico

Croton rzedowskii is described, the type being from San Luis Potosí. The species ranges from San Luis Potosi westward to Zacatecas, thence southeastward to Oaxaca.     

Ipomoea littoralis (Convolvulaceae)—taxonomy,distribution, and ethnobotany

Ipomoea littoralis (Convolvulaceae), a member of Ipomoea section Batatas, is the only species of the section native and still endemic to the Old World. In spite of confusion in the literature, the correct name for the species is I. littoralis. Plants with which I. littoralis has been confused are endemic to Australia and are properly called I. gracilis. These two names apply to species belonging to different sections of Ipomoea. Ipomoea littoralis probably shares a common ancestor with I. ramosissima of the neotropics. Data from a variety of sources, including common association with people and the many vernacular names for the plants, indicate that they are not only wild but are also encouraged and even cultivated.     

Taxonomy and distribution of Chaptalia dentata and C. Albicans (Asteraceae: Mutisieae)

Chaptalia dentata (L.) Cass. andC. albicans (Sw.) Vent. ex Steudel incorrectly have been recognized as conspecific in recent treatments. Although they are vegetatively similar, they differ in features of the flowers and fruits—especially the mature achenes. Both species occur in the Bahamas and the Greater Antilles of the West Indies:Chaptalia dentata is endemic to that area, absent only from Jamaica;C. albicans is more widespread, as it occurs in Jamaica as well as in scattered localities on the American mainland—southern Florida, various localities in Belize, Honduras, and Guatemala, and the Mexican states of Veracruz, San Luis Potosí, Chiapas, and Yucatán.     

燕麦属不同倍性种质资源抗旱性状评价及筛选

盆栽控水试验测定了燕麦属13个二倍体、7个四倍体和5个六倍体物种共106份材料的主要抗旱性状表现,用GGEbiplot软件的主成分分析法比较了各性状之间的关系及其对抗旱鉴定的贡献,综合评价燕麦属野生资源在燕麦抗旱育种中的潜能和利用价值。结果表明,干旱处理后植株的死亡率和萎蔫程度与可溶性糖含量的增加幅度呈显著正相关关系(r>0.5, P<0.05),而胁迫后植株的丙二醛(MDA)含量和植株相对电导率与抗旱能力也明显相关(r>0.5, P<0.01)。综合考虑抗旱的相关形态和生理指标,筛选到二倍体Avena atlantica、A. wiestii 和A. strigosa,四倍体种A. murphyi,以及六倍体栽培燕麦A. sativa和普通野燕麦A. fatua的部分居群具有优良的综合抗旱性。基于A. wiestii,A. strigosa和A. murphyi与栽培燕麦较近的亲缘关系,其抗旱性可通过远缘杂交的方式在普通燕麦育种中加以利用。而对于具有明显抗旱优势的野生二倍体材料A. atlantica,则可通过克隆其抗旱基因进而遗传转化的方法将其应用于栽培燕麦的抗旱性改良。同时该研究表明燕麦的抗旱性不具有种属和分布区域的特异性,因此其抗旱性并非简单的由基因或环境决定,在确定抗旱材料时需要对个体进行全面的抗旱性评价和鉴定,以期在利用抗旱材料或通过克隆抗旱基因来改善干旱地区生态环境的实践中能更准确和有效。     

Use of Ipomoea trifida germ plasm for sweet potato improvement. 3. Development of 4x interspecific hybrids between Ipomoea batatas (L.) Lam. (2n=6x=90) and I. trifida (H.B.K) G. Don. (2n=2x=30) as storage-root initiators for wild species

Summary More than 28,000 pollinations were carried out between 5 Ipomoea batatas and 41 diploid I. trifida accessions of diverse origins to obtain 4x interspecific hybrids. From the resultant 730 seeds, 248 plants were finally obtained. Ploidy level determination of the progeny showed unexpected results: 52 individuals were hexaploid, 5 were pentaploid, 190 were tetraploid, as expected, and one was not determined. The existence of 5x and 6x progenies from 6x x 2x crosses not only confirmed the presence of 2n gametes but also their successful function in gene flow between ploidy levels and polyploidization within this genus. The progeny and their cultivated parents were planted in an observation field. The cultivated parents produced 0.49 kg/plant or less. Most 4x progenies did not produce storage roots or had very poor yields; nonetheless, and despite their cultivated parents' poor yields, 8 genotypes yielded between 0.81 and 1.50 kg/plant.A new scheme, using the 4x interspecific hybrids, is proposed for evaluating 2x and 4x wild accessions of the section Batatas to which the sweet potato belongs. Other possible uses of the 4x hybrids in breeding and genetics of the sweet potato are also discussed.     

Dahlia spectabilis (Asteraceae, Coreopsideae), a new species from San Luis Potosí, Mexico

Dahlia spectabilis (Asteraceae, Coreopsideae), a new species from San Luis Potosí, Mexico, is described and illustrated. The plant is distinguished by its large habit, big flowering heads, and overall lack of trichomes. It occurs within the natural range for the genus and is known from only one location where it is under heavy grazing pressure.

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Resumen   Dahlia spectabilis (Asteraceae, Coreopsideae), una especie nueva del estado de San Luis Potosí, México, es descrita e ilustrada. Se distingue por su hábito más grande, su grandes inflorescencias y la falta de tricomas. Ocuriendo dento del rango natural del género, conocida solo por un poblacón, la cual está sufriendo por presión de ganado.

     

Argia mayi, a new species from México (Zygoptera: Coenagrionidae)

A new species of Argia is illustrated and described from material collected in the states of Colima, Guerrero, Jalisco, Michoacán, Morelos and Oaxaca, México. Argia mayi n. sp. is morphologically similar to Argia pocomana Calvert. It differs from the latter by the morphology of the abdominal appendages in the males and by having four postquadrangular cells in FW in both sexes, blue on the dorsum of males restricted to S8-9 and an erect hind margin of the mesostigmal plate in females.     

A new species of Ceratozamia (Cycadaceae) from San Luis Potosí

A new species ofCeratozamia (Cycadaceae) from San Luis Potosí, Mexico is described. This species differs from all others in the genus by the clustering of leaflets along the rachis.     

Abundant Microsatellite Diversity and Oil Content in Wild Arachis Species

The peanut (Arachis hypogaea) is an important oil crop. Breeding for high oil content is becoming increasingly important. Wild Arachis species have been reported to harbor genes for many valuable traits that may enable the improvement of cultivated Arachis hypogaea, such as resistance to pests and disease. However, only limited information is available on variation in oil content. In the present study, a collection of 72 wild Arachis accessions representing 19 species and 3 cultivated peanut accessions were genotyped using 136 genome-wide SSR markers and phenotyped for oil content over three growing seasons. The wild Arachis accessions showed abundant diversity across the 19 species. A. duranensis exhibited the highest diversity, with a Shannon-Weaver diversity index of 0.35. A total of 129 unique alleles were detected in the species studied. A. rigonii exhibited the largest number of unique alleles (75), indicating that this species is highly differentiated. AMOVA and genetic distance analyses confirmed the genetic differentiation between the wild Arachis species. The majority of SSR alleles were detected exclusively in the wild species and not in A. hypogaea, indicating that directional selection or the hitchhiking effect has played an important role in the domestication of the cultivated peanut. The 75 accessions were grouped into three clusters based on population structure and phylogenic analysis, consistent with their taxonomic sections, species and genome types. A. villosa and A. batizocoi were grouped with A. hypogaea, suggesting the close relationship between these two diploid wild species and the cultivated peanut. Considerable phenotypic variation in oil content was observed among different sections and species. Nine alleles were identified as associated with oil content based on association analysis, of these, three alleles were associated with higher oil content but were absent in the cultivated peanut. The results demonstrated that there is great potential to increase the oil content in A. hypogaea by using the wild Arachis germplasm.     

Development, characterization, genetic diversity and cross-species/genera transferability of ILP markers in rubber tree (Hevea brasiliensis)

To construct a linkage map enriched with tapping panel dryness (TPD)-related markers, we firstly utilized rubber tree ESTs associated with TPD to develop intron length polymorphism (ILP) markers. In this study, 52 new ILP markers were further developed. Together with the ILP markers previously reported, 102 ILP markers developed from TPD-related ESTs were analyzed within 39 Hevea germplasm in detail. The PCR success rate and polymorphism rate of ILP markers was 97.06 and 61.62 %, respectively. The results based on PCR amplification and sequence analyses provided the evidences on cross-species/genera transferability of rubber tree ILP markers. The average polymorphic information content (PIC) values of 39 Hevea germplasm were about 0.1719, indicating that the genetic base of Hevea germplasm selected in this study was very narrow. Among 39 Hevea germplasm, the PIC value of wild rubber tree accessions was the highest, followed by Hevea species and cultivated rubber tree clones. Based on the similarity coefficient of ILP markers, 39 Hevea germplasm were divided into three groups including cultivated clones, wild accessions and Hevea species, suggesting that the classification was generally related to the characterization of Hevea germplasm. The ILP markers developed in this study further enriches the number of molecular marker in rubber tree, and the ILP markers will have a wide application in DNA fingerprinting, genetic diversity, marker-assisted selection and genetic mapping, etc. Moreover, the ILP markers transferred cross-euphorbiaceae family might be utilized in cassava, castor bean and physic nut.     

Simple sequence repeat diversity in diploid and tetraploid Coffea species.

Thirty-four fluorescently labeled microsatellite markers were used to assess genetic diversity in a set of 30 Coffea accessions from the CENICAFE germplasm bank in Colombia. The plant material included one sample per accession of seven East African accessions representing five diploid species and 23 wild and cultivated tetraploid accessions of Coffea arabica from Africa, Indonesia, and South America. More allelic diversity was detected among the five diploid species than among the 23 tetraploid genotypes. The diploid species averaged 3.6 alleles/locus and had an average polymorphism information content (PIC) value of 0.6, whereas the wild tetraploids averaged 2.5 alleles/locus and had an average PIC value of 0.3 and the cultivated tetraploids (C. arabica cultivars) averaged 1.9 alleles/locus and had an average PIC value of 0.22. Fifty-five percent of the alleles found in the wild tetraploids were not shared with cultivated C. arabica genotypes, supporting the idea that the wild tetraploid ancestors from Ethiopia could be used productively as a source of novel genetic variation to expand the gene pool of elite C. arabica germplasm.     

iPBS-Retrotransposons-based genetic diversity and relationship among wild annual Cicer species

Lack of requisite genetic variation in cultivated species has necessitated systematic collection, documentation and evaluation of wild Cicer species for use in chickpea variety improvement programs. Cicer arietinum has very narrow genetic variation, and the use of a wild relative in chickpea breeding could provide a good opportunity for increasing the available genetic variation of cultivated chickpea. Genetic diversity and the relationship of 71 accessions, from the core area of chickpea origin and domestication (Southeastern Turkey), belonging to five wild annual species and one cultivated species (Cicer arietinum) were analysed using iPBS-retrotransposon and ISSR markers. A total of 136 scorable bands were detected using 10 ISSR primers among 71 accessions belonging to 6 species, out of which 135 were polymorphic (99.3 %), with an average of 13.5 polymorphic fragments per primer, whereas iPBS detected 130 bands with 100 % polymorphism with an average of 13.0 bands per primer. C. echinospermum and C. pinnatifidum were the most diverse among species, whereas C. arietinum exhibited lower polymorphism. The average polymorphism information contents (PIC) value for both marker systems was 0.91. The clustering of the accessions and species within groups was almost similar, when iPBS and ISSR NeighborNet (NNet) planar graphs were compared. Further detailed studies are indispensable in order to collect Cicer germplasm, especially C. reticulatum, from southeastern Turkey particularly, from Karacada? Mountain for preservation, management of this species, and to study their genetic diversity at molecular level. This study also demonstrates the utility and role of iPBS-retrotransposons, a dominant and ubiquitous part of eukaryotic genomes, for diversity studies in wild chickpea and in cultivated chickpea.     

CHLOROPLAST DNA POLYMORPHISM SUGGESTS NIGERIAN CENTER OF DOMESTICATION FOR THE COWPEA,VIGNA UNGUICULATA (LEGUMINOSAE)

Twenty-one independent chloroplast DNA polymorphisms were identified in Vigna unguiculata defining 19 different chloroplast DNA molecules (plastome types). Two plastome types, differing by a single character, were found among 32 accessions of cultivated cowpea (Vigna unguiculata ssp. unguiculata). Eighteen different plastome types were found among 26 accessions of wild cowpea (V. unguiculata ssp. dekindtiana). The very low level of chloroplast DNA diversity found in cultivated accessions relative to wild cowpea suggests that 1) the domesticated form was derived from a narrow selection of the wild germplasm and 2) chloroplast gene flow between wild and cultivated types has been very limited. Cladistic analysis of the cpDNA data generated a robust tree completely lacking homoplasy. Three wild accessions from Nigeria possessed a plastome type indistinguishable from one present in cultivated accessions, suggesting that Nigeria represents one center of domestication of the cowpea. The other plastome type within the cultivated germplasm was not found among wild accessions.     

Enlargement of fibrous roots inIpomoea sectionBatatas (Convolvulaceae)

The bank of sweet potato germplasm at the International Potato Center (CIP) in Lima, Peru, is made up of cultivated germplasm [Ipomoea batatas (L.) Lam.] and wild germplasm collected in Latin America and the Caribbean. In the wild germplasm sectionBatatas is included because of its genetic importance in relation to its phylogenetic affinity with the cultivated sweet potato. In our study we have included 11 wild species of the section to identify and determine the primary factors that influence the enlargement of fibrous roots under greenhouse conditions. Thus, the study was divided into two sequential phases: a) identification of wild species with thickened fibrous roots; b) determination of the primary factors that influence the thickening of fibrous roots. The first phase began between 197 and 593 days after planting the 11 species by using a visual evaluation of the roots according to the gradual scale: 0 = fibrous roots; 1 = slightly thickened; 2 = moderately thickened; 3 = thickened; 4 = very thick. As a result four species were identified in categories three and four (I. batatas, I. cordato-triloba, I. tiliacea, andI. ramosissima). The second phase was begun between 123 and 669 days after planting of nine species identified with some category of enlargement according to an evaluation with a gradual quantified scale: 0 = <1.45 mm; 1 = 1.45–3.99 m; 2 = 4.0–6.99 mm; 3 = 7.0–9.0 mm; 4 = >9.0 mm. In this phase, two physiological factors were identified (vegetative period and volume of substrate) and a genetic factor (level of ploidy), which directly influence the thickening of fibrous roots. Considering the four species identified with thickened fibrous roots in categories three and four in the two phases of the study [I. batatas (4x),I. tiliacea (4x),I. cordato-triloba (2x) andI. ramosissima (2x)], we propose a plan for the use of wild germplasm in a program of systematic genetic improvement of the sweet potato.     

Ecological Bases for Sustainable Management of Pochote (<Emphasis Type="Italic">Ceiba aesculifolia</Emphasis> subsp. <Emphasis Type="Italic">parvifolia)</Emphasis> Through Demographic Analysis

The Tehuacán-Cuicatlán Valley is one of the areas with the highest biocultural diversity in Mexico. There, the pochote (Ceiba aesculifolia subsp. parvifolia) has been used for more than 7000 years, and its seeds are currently consumed and sold in traditional markets. However, the high demand-supply of this resource in regional markets could affect the permanence of the species populations. This study evaluated the state of populations harvested at different intensity levels, their risk, and potential for sustainable use. In the state of Puebla, pochote seeds are mainly commercialized, while in Oaxaca they are directly consumed by households. During 2 years, we censused five populations of the region from permanent 5000 m² plots. We evaluated growth, survival, and fecundity of individual plants of each population and constructed demographic matrix models for calculating population growth rates (λ), viability, and elasticity. Population growth rates in Puebla were λ ? 1, while in Oaxaca λ >?1. Permanence of adult trees is the most important demographic aspect for maintaining populations’ growth rates. Viability analyses for 30 years showed that two populations studied are at risk of extinction. In localities where seeds are directly consumed, the populations tolerate harvest rates of nearly 90% of fruits, while in those used for commercialization the populations tolerate lower levels, because of variations in population structure and growth rates. By simulating different harvest rates, we suggest optimal sustainable harvesting. For conserving pochote, monitoring of used populations is crucial. Our current information provide criteria that may be helpful to local authorities and people for making appropriate decisions to obtain benefits from pochote without compromising its populations’ stability.     

Characterization and utilization of microsatellites in the <Emphasis Type="Italic">Coffea canephora</Emphasis> genome to assess genetic association between wild species in Kenya and cultivated coffee

Coffee is an important beverage crop in the world and has a significant contribution to Kenya’s economy. Here, we analyzed the genome-wide distribution of microsatellites in the Coffea canephora genome. A total of 159,041 SSRs were identified, with an overall density of 308 SSRs per Mb. Tetra-nucleotide repeats are the most abundant, accounting for 32 % of the total SSRs. AT-rich motifs are dominant across all SSR repeat units, while GC-rich motifs were generally rare. A set of 100 SSRs was selected to amplify 96 coffee accessions, including 10 wild accessions collected from Mt. Marsabit (Kenya). Of these SSRs, 33 % generated clear polymorphic bands among all tested accessions, with an average of 3.9 alleles per SSR locus. Wild coffee species from Mt. Marsabit showed a close genetic similarity with cultivated accessions in Kenya, suggesting that the wild species in Mt. Marsabit played an important role in the domestication of cultivated coffee in Kenya. Significantly low pairwise genetic divergence was observed between cultivated and wild accessions in Kenya, suggesting a relatively narrow level of genetic basis among coffee germplasm in Kenya. In addition, cultivated and wild coffee accessions in Kenya show a great divergence from those in other countries. Our results not only provide molecular tools for genetic studies in coffee but are also helpful for conservation and coffee breeding programs in Kenya.     

Leveraging natural diversity: back through the bottleneck

Plant breeders have long recognized the existence of useful genetic variation in the wild ancestors of our domesticated crop species. In cultivated rice (Oryza sativa), crosses between high-yielding elite cultivars and low-yielding wild accessions often give rise to superior offspring, with wild alleles conferring increased performance in the context of the elite cultivar genetic background. Because the breeding value of wild germplasm cannot be determined by examining the performance of wild accessions, a phylogenetic approach is recommended to determine which interspecific combinations are most likely to be useful in a breeding program. As we deepen our understanding of how genetic diversity is partitioned within and between cultivated and wild gene pools of Oryza, breeders will have increased power to make predictions about the most efficient strategies for utilizing wild germplasm for rice improvement.     

Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers

Retrotransposon segments were characterized and inter-retrotransposon amplified polymorphism (IRAP) markers developed for cultivated flax (Linum usitatissimum L.) and the Linum genus. Over 75 distinct long terminal repeat retrotransposon segments were cloned, the first set for Linum, and specific primers designed for them. IRAP was then used to evaluate genetic diversity among 708 accessions of cultivated flax comprising 143 landraces, 387 varieties, and 178 breeding lines. These included both traditional and modern, oil (86), fiber (351), and combined-use (271) accessions, originating from 36 countries, and 10 wild Linum species. The set of 10 most polymorphic primers yielded 141 reproducible informative data points per accession, with 52% polymorphism and a 0.34 Shannon diversity index. The maximal genetic diversity was detected among wild Linum species (100% IRAP polymorphism and 0.57 Jaccard similarity), while diversity within cultivated germplasm decreased from landraces (58%, 0.63) to breeding lines (48%, 0.85) and cultivars (50%, 0.81). Application of Bayesian methods for clustering resulted in the robust identification of 20 clusters of accessions, which were unstratified according to origin or user type. This indicates an overlap in genetic diversity despite disruptive selection for fiber versus oil types. Nevertheless, eight clusters contained high proportions (70?C100%) of commercial cultivars, whereas two clusters were rich (60%) in landraces. These findings provide a basis for better flax germplasm management, core collection establishment, and exploration of diversity in breeding, as well as for exploration of the role of retrotransposons in flax genome dynamics.     

Recent Bryological Literature, 58

Abstract

Recent field work in Mexico reveals fifteen cleistocarpic moss species in the Neovolcanic Belt, several of which represent new state records for Hidalgo, Michoacán, Puebla or Tlaxcala. The distribution of these species suggests that they have been able to cross the Neovolcanic Belt, but their method of dispersal remains obscure. Local dispersal may be enhanced by forest disturbance, agriculture, grazing and/or by their ability to shed the capsules with ease.