Radiolarian assemblages in surface sediments along longitude 175°E in the Pacific Ocean

This study of 24 surface sediment samples along longitude 175°E between latitudes 48°N and 14°S in the western Pacific Ocean documents the relationship between the modern distribution of radiolarian assemblages and present oceanographic conditions. Ninety-two species were classified into eight clusters by using R-mode cluster analysis. Q-mode cluster analysis was used to distinguish five geographical zones, which were interpreted to represent the Tropical, Southern Subtropical, Northern Subtropical, Transitional, and Subarctic climatic zones. Species richness, diversity, and equitability are highest in the Tropical and Transitional Zones. We attempted to formulate new regression equations considering ecological information on the vertical distribution of radiolarian species. Transfer functions were derived from regression analysis of radiolarian assemblages to observed Sea Surface Temperature (SST) values. The transfer functions have a standard error of 1.16 °C in the estimate of winter SST, 0.81 °C in that of summer SST.     

Radiolarian distribution and the late pleistocene history of the Southeastern Indian Ocean

A factor analysis, of radiolarian assemblages in 36 trigger-core tops from the Southeast Indian Ocean (between latitudes 40° to 65° S and longitudes 80° to 120° E) gives three temperature-related factors and one related primarily to near-bottom processes. A paleoecologic equation was written relating the surface factor values to the present-day observed sea-surface temperatures for summer and winter. By means of a regression technique, paleotemperatures were estimated at the level of the last glacial maximum (18, 000 years B.P.) in five Eltanin cores and for the last 600, 000 years in core E45-74. The average temperature difference along a longitudinal transect of cores crossing the Antarctic Convergence was 2.2° colder 18, 000 years ago than today. The estimated sea-surface paleotemperatures in E45-74 showed high correlations with radiolarian species diversity indices, the Subantarctic and Antarctic factor values, percent of CaCO₃, δ¹³O, number of radiolarian fragments and percent Antarctissa strelkovi. Based on paleotemperatures and factor values down this core, it is estimated that the Antarctic Convergence was displaced northward to the position of E45-74 six times in the last 600, 000 years.     

Planktonic foraminifera of the northern Indian Ocean: Distribution and preservation in surface sediments

In the northern Indian Ocean, planktonic foraminiferal tests accumulate in a wide variety of surface-water environments and depositional settings. This variability enables us to isolate the effects that surface-water ecology and differential dissolution have on the distribution of planktonic foraminifera from 251 geographically widespread surface sediment samples.Foraminiferal abundance varies from 0 to > 10⁴ whole foraminifera in the greater than 150 μm fraction per gram dry sediment. Values < 10 characterize the three deep basins of the equatorial Indian Ocean and the western Bay of Bengal. Foraminiferal tests are most abundant on carbonate covered Ninety-East and Carlsberg Ridges. Absolute abundance patterns are mainly controlled by non-ecological processes. Variations in dissolution resistant species (RSP) with water depth reveal that the foraminiferal lysocline (FL) varies regionally. The FL is deepest (3,800 m) in the equatorial region, rises abruptly to 3,300 m in the Arabian Sea, and varies from 2,600 m to near 2,000 m moving northward in the Bay of Bengal. Deep samples with anomalously low RSP (< 30%) suggest redeposition.Systematic geographic and depth-related variation is observed for the 17 most abundant foraminiferal species. Dissolution resistant species (G. menardii, G. tumida, G. dutertrei, P. obliquiloculata) generally exhibit a rapid and continuous increase in relative abundance at and below the FL. Susceptible species (G. ruber, G. bulloides, G. glutinata, for example) exhibit a rapid and continuous decrease in relative abundance at and below the FL. Moderately susceptible species (G. conglobatus, G. aequilateralis, G. conglomerata, for example) rapidly increase in abundance at the FL and systematically decrease with depth below the FL.Principal components analysis (PCA) of faunal data from minimally dissolved (< 30% RSP) samples reveals important ecologically related species intercorrelations. The major biogeographic gradient is the negative covarying relationship between aG. bulloides-G. glutinata species pair and a grouping ofG. sacculifer, G. conglobatus, G. aequilateralis, andG. ruber. PCA of all samples demonstrates how differential dissolution alters this and other species relationships. Species groupings that incorporateG. ruber, G. menardii, andG. dutertrei are particularly affected by dissolution.Comparison of average faunal data from minimally dissolved samples in the northern Indian Ocean with similar samples from other tropical regions suggests varying environmental factors produce distinct faunas within the tropical ocean. For example,G. bulloides, G. falconensis, andG. hexagona are significantly more abundant in northern Indian Ocean surface sediments while such species asG. ruber, G. sacculifer, G. dutertrei, andP. obliquiloculata dominate in other tropical regions.     

island biogeography of Day Geckos (Phelsuma) in the Indian Ocean

Summary Step-wise multiple regression was employed to probe the determinants of species diversity of day geckos (Phelsuma) in the Indian Ocean. Independent variables were area, elevation, and two measures of isolation. Distance from Madagascar and island height (an indicator of habitat diversity) were the two most important predictors of species richness. Similar studies on other taxa rarely find isolation to be a major factor. The relatively poor dispersal abilities of reptiles may explain why isolation, rather than attributes of the islands, are more important in this case. The regressions also indicate that habitat diversity (assumed to correlate with maximum island elevation) is more important than area per se in determining species diversity. These results agree with predictions of the equilibrium theory of island biogeography, but historical processes have also greatly influenced species richness.     

Dynamic responses of picophytoplankton to physicochemical variation in the eastern Indian Ocean

Picophytoplankton were investigated during spring 2015 and 2016 extending from near‐shore coastal waters to oligotrophic open waters in the eastern Indian Ocean (EIO). They were typically composed of Prochlorococcus (Pro), Synechococcus (Syn), and picoeukaryotes (PEuks). Pro dominated most regions of the entire EIO and were approximately 1–2 orders of magnitude more abundant than Syn and PEuks. Under the influence of physicochemical conditions induced by annual variations of circulations and water masses, no coherent abundance and horizontal distributions of picophytoplankton were observed between spring 2015 and 2016. Although previous studies reported the limited effects of nutrients and heavy metals around coastal waters or upwelling zones could constrain Pro growth, Pro abundance showed strong positive correlation with nutrients, indicating the increase in nutrient availability particularly in the oligotrophic EIO could appreciably elevate their abundance. The exceptional appearance of picophytoplankton with high abundance along the equator appeared to be associated with the advection processes supported by the Wyrtki jets. For vertical patterns of picophytoplankton, a simple conceptual model was built based upon physicochemical parameters. However, Pro and PEuks simultaneously formed a subsurface maximum, while Syn generally restricted to the upper waters, significantly correlating with the combined effects of temperature, light, and nutrient availability. The average chlorophyll a concentrations (Chl a) of picophytoplankton accounted for above 49.6% and 44.9% of the total Chl a during both years, respectively, suggesting that picophytoplankton contributed a significant proportion of the phytoplankton community in the whole EIO.     

Recent abyssal benthic foraminiferal biofacies of the eastern equatorial Indian Ocean

Study of Recent abyssal benthic foraminifera from core-top samples in the eastern equatorial Indian Ocean has identified distinctive faunas whose distribution patterns reflect the major hydrographic features of the region. Above 3800 m, Indian Deep Water (IDW) is characterized by a diverse and evenly-distributed biofacies to whichGlobocassidulina subglobosa, Pyrgo spp.,Uvigerina peregrina, andEggerella bradyi are the major contributors.Nuttalides umbonifera andEpistominella exigua are associated with Indian Bottom Water (IBW) below 3800 m. Within the IBW fauna,N. umbonifera andE. exigua are characteristic of two biofacies with independent distribution patterns.Nuttalides umbonifera systematically increases in abundance with increasing water depth. TheE. exigua biofacies reaches its greatest abundance in sediments on the eastern flank of the Ninetyeast Ridge and in the Wharton-Cocos Basin. The hydrographic transition between IDW and IBW coincides with the level of transition from waters supersaturated to waters undersaturated with respect to calcite and with the depth of the lysocline. Carbonate saturation levels, possibly combined with the effects of selective dissolution on the benthic foraminiferal populations, best explain the change in faunas across the IDW/IBW boundary and the bathymetric distribution pattern ofN. umbonifera. The distribution of theE. exigua fauna cannot be explained with this model.Epistominella exigua is associated with the colder, more oxygenated IBW of the Wharton-Cocos Basin. The distribution of this biofacies on the eastern flank of the Ninetyeast Ridge agrees well with the calculated bathymetric position of the northward flowing deep boundary current which aerates the eastern basins of the Indian Ocean.     

Age and growth of Anguilla bicolor bicolor leptocephali in the eastern Indian Ocean

A sampling survey for leptocephali was conducted in the eastern Indian Ocean to the west of Sumatra from 5 to 20 June 2003 in an overlapping area with the historical survey in September to November 1929 during the Danish Round the World Expedition. The age and larval growth rate of 34 Anguilla bicolor bicolor collected in 2003 were estimated using their otolith microstructure to obtain new information about the early life history of this sub-species. The total lengths and ages of these leptocephali were 44·1–55·5 mm and 114–158 days, respectively. Their hatching dates ranged from 3 January to 20 February 2003. Combining these age data and the estimated age of leptocephali collected by others in the same area, this sub-species was estimated to have a wide range of spawning periods. Individual growth rates of the leptocephali in 2003 ranged from 0·32 to 0·39 mm day⁻¹ with a mean ± s . d . of 0·35 ± 0·02 mm day⁻¹. These values were lower than the growth rates of leptocephali of other tropical eels such as Anguilla celebesensis or Anguilla borneensis , suggesting that A. b. bicolor from the eastern Indian Ocean have a longer leptocephalus period of oceanic migration.     

Bacterial diversity in surface sediments from the Pacific Arctic Ocean

In order to assess bacterial diversity within four surface sediment samples (0–5 cm) collected from the Pacific Arctic Ocean, 16S ribosomal DNA clone library analysis was performed. Near full length 16S rDNA sequences were obtained for 463 clones from four libraries and 13 distinct major lineages of Bacteria were identified (α, β, γ, δ and ε-Proteobacteria, Acidobacteria, Bacteroidetes, Chloroflexi, Actinobacteria, Firmicutes, Planctomycetes, Spirochetes, and Verrucomicrobia). α, γ, and δ-Proteobacteria, Acidobacteria, Bacteroidetes, Actinobacteria were common phylogenetic groups from all the sediments. The γ-Proteobacteria were the dominant bacterial lineage, representing near or over 50% of the clones. Over 35% of γ-Proteobacteria clones of four clone library were closely related to cultured bacterial isolates with similarity values ranging from 94 to 100%. The community composition was different among sampling sites, which potentially was related to geochemical differences.     

印度洋表层海水石油降解菌的多样性分析

【目的】为了研究印度洋石油降解菌多样性,并获得新的石油降解菌。【方法】本研究通过印度洋表层海水样品采集、以柴油与原油1:1混合物作为碳源,从中富集、分离筛选石油降解菌,并通过PCR-DGGE对13个站点富集菌群的菌群结构进行分析。【结果】通过形态观察、生理生化反应和16SrRNA分析,共得到共29个属的51株不同的细菌,它们主要是属于α亚群和γ亚群。其中,Alcanivorax属(占18%),Novosphingobium属(占10%)和Marinobacter(占6%)Thalassospira(占6%)为主要的优势菌。通过生态多样性分析表明,Shannon-Winner指数(H)为4.57968,说明其具有较高的多样性;均匀度指数(E)为0.8664771,表示其分布比较均匀。单菌实验表明,49株具有石油降解能力其中,Sinomonas,Knoellia,Mesoflavibacter等属的细菌为首次发现有降解能力。DGGE分析表明Alcanivorax属的细菌是印度洋表层海水中的重要石油降解菌。【结论】本研究首次揭示了印度洋表层海水中石油降解菌的多样性,并获取了若干在海洋石油污染生物修复中具有应用前景的降解菌。     

印度洋深海沉积物石油烃降解菌分离、鉴定与多样性分析

烃类物质在海洋环境中广泛分布,深海可能含有特殊的烃降解微生物。本研究通过对西南印度洋中脊与印度洋中部深海沉积物中石油降解菌的富集培养和分离鉴定,从6个站点的样品中共分离得到800株菌,通过BOX-PCR去重复菌株后,对其中183株菌进行了16S rRNA基因序列分析,发现这些菌分属于23个属;其中,γ-变形菌纲的食烷菌属(Alcanivorax)和放线菌纲的微杆菌属(Microbacterium)占优势。此外,还发现了食烷菌属2个潜在的新种、假海栖菌属(Pseudooceanicola)1个潜在新种。高通量测序结果证明,富集菌群中γ-变形菌纲是优势菌,主要包括食烷菌属、盐单胞菌属(Halomonas)、海杆菌属(Marinobacter)等。结合可培养菌与高通量测序结果,食烷菌属、盐单胞菌属、海杆菌属、交替假单胞菌(Pseudoalteromonas)、海源菌属(Idiomarina)与微杆菌属(Microbacterium)是沉积物样品中常见的石油烃降解菌,迪茨氏菌属(Dietzia)、红球菌属(Rhodococcus),假单胞菌属(Pseudomonas)、赤杆菌属(Erythrobacter)与副球菌属(Paracoccus)等可能也参与了烃的降解。     

Coccolith distribution patterns in surface sediments of Equatorial and Southeastern Pacific Ocean

This study aims to contribute to a more detailed knowledge of the biogeography of coccolithophores in the Equatorial and Southeastern Pacific Ocean. Census data of fossil coccoliths are presented in a suite of core-top sediment samples from 15°N to 50.6°S and from 71°W to 93°W. Following standard preparation of smear slides, a total of 19 taxa are recognized in light microscopy and their relative abundances are determined for 134 surface sediment samples. Considering the multivariate character of oceanic conditions and their effects on phytoplankton, a Factor Analysis was performed and three factors were retained. Factor 1, dominated by Florisphaera profunda and Gephyrocapsa oceanica, includes samples located under warm water masses and indicates the occurrence of calcite dissolution in the water column in the area offshore Chile. Factor 2 is related to cold, low-salinity surface-water masses from the Chilean upwelling, and is dominated by Emiliania huxleyi, Gephyrocapsa sp. < 3 μm, Coccolithus pelagicus and Gephyrocapsa muellerae. Factor 3 is linked to more saline, coastal upwelling areas where Calcidiscus leptoporus and Helicosphaera carteri are the dominant species.     

Phylogeny and biogeography of Anthopleura in the North Atlantic Ocean

Two species of Anthopleura, A. ballii and A. thallia, co-occur in Northern Europe with Bunodosoma biscayensis, a species closely allied to Anthopleura. The historical factors underlying their distribution are here investigated as part of a preliminary phylogenetic analysis of morphological data. Based on this analysis, Bunodosoma is nested within Anthopleura, and B. biscayensis is more closely related to members of Anthopleura than to other members of Bunodosoma. Because B. biscayensis also has adhesive verrucae, rather than non-adhesive, rounded vesicles, it is transferred to Anthopleura.The tree consists of two major clades, each of which includes species from the Atlantic and the Pacific. The tree shows geographic structure: one clade includes species found only in the Northern Hemisphere, and the other includes widespread species and species found only in the Southern Hemisphere. Although all of the European species of Anthopleura are part of the Northern Hemisphere clade, none are one another’s closest relative.     

Occurrence and density of Halobates micans (Hemiptera: Gerridae) in the eastern South Indian Ocean

Two species of ocean skaters, Halobates germanus and Halobates micans, live in the tropical and subtropical waters of the Indian Ocean. From December 1992 to December 1993, Halobates was intensively sampled in the easternmost region of the South Indian Ocean (13–18.5°S, 114–121E°), from which there have been a small number of records of Halobates. No H. germanus was caught, but a total of 1190 H. micans were collected, with densities estimated at 13 900–28 100 individuals/km². This suggests that H. micans lives in the study area at high densities comparable to those in the Atlantic and the Pacific Oceans. We also discuss the possible effects of ocean currents and winds on the geographic distributions of the two Halobates species in the eastern South Indian Ocean.     

Fourier shape analysis of Globorotalia truncatulinoides from late Quaternary sediments in the southern Indian Ocean

Fourier shape analysis has been used to determine the morphological variation within the planktonic foraminifera,Globorotalia truncatulinoides from the southern Indian Ocean. Measured specimens are from 20 Recent core top samples distributed from 22°S (central gyre water mass) to 47°S (subantarctic water mass). Fourier analysis determined that the two most significant components of shape within this species are elongateness and conicalness which are characterized by harmonics 2 and 3, respectively. Mean harmonic 2 values are significantly correlated with the percentage of sinistral coiled individuals in each sample (r = +0.91). Mean values for harmonic 3 have a correlation coefficient with water temperature and salinity at 200 m of r = +0.85 and +0.88. Specimens become less elongate and more conical in a traverse from south to north.Fourier shape analysis of planktonic foraminifera was then shown to be useful in investigations of late Quaternary paleoceanographic problems. Four piston cores were examined from the southern Indian Ocean. Total faunal and oxygen isotope analyses provided the stratigraphic framework. The results indicated that the central gyre water mass remained relatively stable during glacial stages. The region of the Subtropical Convergence was strongly affected, however, by the northward migration of the Polar Front.     

Biodiversity and biogeography of Southern Ocean pycnogonids

The pycnogonids of the Southern Ocean have been studied for almost two centuries and have played a key role in shaping previous biogeographic regions for the Antarctic benthos. The aim of this study was to assess the biogeographic patterns derived from the most current sample records of pycnogonids from the Southern Ocean and neighbouring areas. 332 species of pycnogonids from 1837 sample locations were analysed using 279 3° by 3° grid cells. We investigated richness patterns and the effect of sampling intensity at both local and regional scales, and used multivariate analysis of distribution patterns and species assemblages to define biogeographic trends. These analyses identified a distinct and isolated Antarctic pycnogonid shelf fauna which was different to that of the deep‐sea around Antarctica, the Sub‐Antarctic islands, South America or New Zealand. Within the Antarctic, we found the South Shetland Islands to be the most speciose region and a probable center of radiation for the pycnogonids. No latitudinal gradients in species richness were detected. We note that the distribution patterns observed are based upon classical taxonomy and discuss the potential for changes to these patterns with new insights from molecular techniques. We conclude that, even with the potential for cryptic species, the large‐scale biogeographic trends observed in the pycnogonids should hold true.     

Towards a generalized biogeography of the Southern Ocean benthos

Aim To investigate whether the biogeographical regions proposed by J. W. Hedgpeth and widely adopted by other authors hold true, are an oversimplification or with further data might show a unified Antarctic province. Location Southern Hemisphere. Methods The distributions of 1318 species of bivalves, 4656 species of gastropods, 1465 species of cheilostome and 167 species of cyclostome bryozoans were analysed for 29 regions in the Southern Hemisphere, including South American, South African, Tasmanian, New Zealand, sub‐Antarctic and Antarctic regions. We present data on species richness, rates of endemism, patterns of radiation, faunal similarities and multivariate biogeographical analyses. Results The most striking pattern to emerge from our data set of species counts per region was a strong east–west hemispheric asymmetry, with high species numbers in New Zealand, Tasmania and South Africa and low numbers in South America. In contrast, no difference was found in richness between the east and west parts of the Southern Ocean. We compared findings in our model taxa with published data on ascidians, cephalopods and pycnogonids. Further evidence of strong faunal links between the Antarctic and South America is reported in this study, although we found little evidence for a biogeographical relationship between the Antarctic or South America and New Zealand/Tasmania. Strong evidence exists for a long‐term influence of the Antarctic Circumpolar Current upon the distribution of Southern Ocean benthos. This is demonstrated by the reduced prevalence of South American species in the Antarctic and sub‐Antarctic with increasing distance from South America in the direction of the current. Three of our four study taxa (bivalves, cheilostomes and cyclostomes) show the Southern Ocean as a ‘single functional unit’ with no evidence for a biogeographical split between east and west. Main conclusions Unlike the biogeographical schemes previously proposed, we show that biogeographical regions in the Southern Ocean differ depending upon the class of animals being considered. Despite this we suggest that some general rules are viable, including species endemism rates of around 50%, a single Antarctic province and a definite distinction between the sub‐Antarctic islands influenced by South America and those of New Zealand.     

Radiolarian faunal turnover across the Oligocene/Miocene boundary in the equatorial Pacific Ocean

The global warming trend of the latest Oligocene was interrupted by several cooling events associated with Antarctic glaciations. These cooling events affected surface water productivity and plankton assemblages. Well-preserved radiolarians were obtained from upper Oligocene to lower Miocene sediments at Ocean Drilling Program (ODP) Leg 199 Sites 1218 and 1219 in the equatorial Pacific, and 110 radiolarian species were identified.Four episodes of significant radiolarian faunal changes were identified: middle late Oligocene (27.5 to 27.3 Ma), latest Oligocene (24.4 Ma), earliest Miocene (23.3 Ma), and middle early Miocene (21.6 Ma). These four episodes approximately coincide with increases and decreases of biogenic silica accumulation rates and increases in δ¹⁸O values coded as “Oi” and “Mi” events. These data indicate that Antarctic glaciations were associated with change of siliceous sedimentation patterns and faunal changes in the equatorial Pacific.Radiolarian fauna was divided into three assemblages based on variations in radiolarian productivity, species richness and the composition of dominant species: a late Oligocene assemblage (27.6 to 24.4 Ma), a transitional assemblage (24.4 to 23.3 Ma) and an early Miocene assemblage (23.3 to 21.2 Ma). The late Oligocene assemblage is characterized by relatively high productivity, low species richness and four dominant species of Tholospyris anthophora, Stichocorys subligata, Lophocyrtis nomas and Lithelius spp. The transitional assemblage represents relatively low values of productivity and species richness, and consists of three dominant species of T. anthophora, S. subligata and L. nomas. The characteristics of the early Miocene assemblage are relatively low productivity, but high species richness. The two dominant species present in this assemblage are T. anthophora and Cyrtocapsella tetrapera. The most significant faunal turnover of radiolarians is marked at the boundary between the transitional/early Miocene assemblages.We also reviewed changes in other microfossil assemblages in the low latitudes during the late Oligocene through early Miocene. The microfossil assemblages of major groups show sequential changes near the Oligocene/Miocene (O/M) boundary (23.8 Ma). Many extinction events and some first occurrences of calcareous nannofossils and many occurrences of radiolarians are found from about 24.8 to 23.3 Ma, and first occurrences of planktic foraminifers and diatoms followed from 23.2 through 22 Ma. Hence, the O/M boundary is identified as a significant level for microfossil evolutions.