Soft‐Bodied Fossils Are Not Simply Rotten Carcasses – Toward a Holistic Understanding of Exceptional Fossil Preservation

Exceptionally preserved fossils are the product of complex interplays of biological and geological processes including burial, autolysis and microbial decay, authigenic mineralization, diagenesis, metamorphism, and finally weathering and exhumation. Determining which tissues are preserved and how biases affect their preservation pathways is important for interpreting fossils in phylogenetic, ecological, and evolutionary frameworks. Although laboratory decay experiments reveal important aspects of fossilization, applying the results directly to the interpretation of exceptionally preserved fossils may overlook the impact of other key processes that remove or preserve morphological information. Investigations of fossils preserving non‐biomineralized tissues suggest that certain structures that are decay resistant (e.g., the notochord) are rarely preserved (even where carbonaceous components survive), and decay‐prone structures (e.g., nervous systems) can fossilize, albeit rarely. As we review here, decay resistance is an imperfect indicator of fossilization potential, and a suite of biological and geological processes account for the features preserved in exceptional fossils.     

Thermally-induced structural and chemical alteration of organic-walled microfossils: an experimental approach to understanding fossil preservation in metasediments

The identification and confirmation of bona fide Archean–Paleoproterozoic microfossils can prove to be a challenging task, further compounded by diagenetic and metamorphic histories. While structures of likely biological origin are not uncommon in Precambrian rocks, the search for early fossil life has been disproportionately focused on lesser thermally altered rocks, typically greenschist or lower‐grade metamorphism. Recently, however, an increasing number of inferred micro‐ and macrofossils have been reported from higher‐grade metasediments, prompting us to experimentally test and quantify the preservability of organic‐walled microfossils over varying durations of controlled heating and under two differing redox conditions. Because of their relatively low‐intensity natural thermal alteration, acritarchs from the Mesoproterozoic Ruyang Group were chosen as subjects for experimental heating at approximately 500°C, with durations ranging from 1 to 250 days and in both oxic (normal present day conditions) and anoxic conditions. Upon extraction, the opacity, reflectivity, color, microchemistry, and microstructures of the heated acritarchs were characterized using optic microscopy, scanning electron microscopy, Raman spectroscopy, and X‐ray photoelectron spectroscopy. The results differ for acritarchs prepared under oxic vs. anoxic conditions, with the anoxic replicates surviving experimental heating longer and retaining biological morphologies better, despite an increasing degree of carbonization with continuous heating. Conversely, the oxic replicates show aggressive degradation. In conjunction with fossils from high‐grade metasediments, our data illustrate the preservational potential of organic‐walled microfossils subjected to metamorphism in reducing conditions, offer insights into the search for microfossils in metasediments, and help to elucidate the influence of time on the carbonization/graphitization processes during thermal alteration.     

FOSSIL DIAGENESIS IN THE BURGESS SHALE

Abstract:  Current models for the exceptional preservation of Burgess Shale fossils have focused on either the HF-extractable carbonaceous compressions or the mineral films identified by elemental mapping. BSEM, EDX and microprobe analysis of two-dimensionally preserved Marpolia , Wiwaxia and Burgessia identifies the presence of both carbonaceous and aluminosilicate films for most features, irrespective of original lability. In the light of the deep burial and greenschist facies metamorphism documented for the Burgess Shale, the aluminosilicate films are identified as products of late-stage volatilization and coincident mineralization of pre-existing compression fossils, whereas the three-dimensionally preserved gut-caecal system of Burgessia is interpreted as an aluminosilicate replacement of a pre-existing carbonate phase. The case for late diagenetic emplacement of aluminosilicate minerals is supported by the extensive aluminosilicification of trilobite shell and (originally) calcareous veinlets in the Burgess Shale, as well as documentation of other secondarily aluminosilicified compression fossils. By distinguishing late diagenetic alteration from the early diagenetic processes responsible for exceptional preservation, it is possible to reconcile the range of preservational modes currently expressed in the Burgess Shale.     

现代丰年虾卵的腐解实验——对早期化石胚胎研究的启示

早寒武世和埃迪卡拉纪中的球状化石,一些已被归入可能的后生动物胚胎化石,由于具较为完好的三维保存方式以及近乎完美的胚胎发育序列,为早期后生动物的起源、分类、谱系演化及发育生物学提供了难得的实证材料。然而随着研究的深入,多数寒武纪胚胎的生物学分类位置未定;而数量异常巨大、又有独自的保存方式的晚元古代陡山沱组胚胎的真伪和生物学归属,更是争议未消。通过对现生生物胚胎的实验埋藏研究,可以揭示出各类生物胚胎在腐解、埋藏各阶段的保存潜力,而现代胚胎在各实验埋藏阶段形态、结构的变化,也能为化石胚胎的研究提供重要的实证材料。本文就是通过对虾卵胚胎各发育阶段腐解保存潜力的实验模拟研究,试图为球状化石的形成机制和化石归属提供一些实验室依据。     

The Beothukis/Culmofrons problem and its bearing on Ediacaran macrofossil taxonomy: evidence from an exceptional new fossil locality

The late Ediacaran siliciclastic successions of eastern Newfoundland, Canada, are renowned for their fossils of soft‐bodied macro‐organisms, which may include some of the earliest animals. Despite the potential importance of such fossils for evolutionary understanding, the taxonomic framework within which Ediacaran macrofossils are described is not clearly defined. Rangeomorphs from a newly discovered fossil surface on the Bonavista Peninsula, Newfoundland, require us to reconsider contemporary use of morphological characters to distinguish between genera and species within Ediacaran taxa. The new surface exhibits remarkable preservational fidelity, resolving features smaller than 0.1 mm in dimension in both frondose and non‐frondose taxa. Such preservation permits the recognition of rarely observed fourth‐ and fifth‐order rangeomorph branching, offering unparalleled opportunities to investigate the fine‐scale construction of rangeomorph taxa including Culmofrons plumosa Laflamme et al., 2012. Our observations enable resolution of taxonomic issues relating to rangeomorphs, specifically overlap between the diagnoses of the frondose genera Beothukis Brasier and Antcliffe, 2009 and Culmofrons. We propose a taxonomic framework for all Ediacaran macrofossils whereby gross architecture, the presence/absence of discrete morphological characters and consideration of growth programme are used to distinguish genera, whereas morphometric or continuous characters define taxa at the species level. On the basis of its morphological characters, Culmofrons plumosa is herein synonymized to a species (Beothukis plumosa comb. nov.) within the genus Beothukis. This discussion emphasizes the need to standardize the taxonomic approach used to describe Ediacaran macrofossil taxa at both the genus and species levels, and raises important considerations for future formulation of higher‐level taxonomic groups.     

Precambrian animal life: Taphonomy of phosphatized metazoan embryos from southwest China

Phosphatized fossils from the Neoproterozoic Doushantuo Formation have provided valuable insight into the early evolution of metazoans, but the preservation of these spectacular fossils is not yet fully understood. This research begins to address this issue by performing a detailed specimen-based taphonomic analysis of the Doushantuo Formation phosphatized metazoan embryos. A total of 206 embryos in 65 thin sections from the Weng'an Phosphorite Member of the Doushantuo Formation were examined and their levels of pre-phosphatization decay estimated. The data produced from this examination reveal a strong taphonomic bias toward earlier (2-cell and 4-cell) cleavage stages, which tend to be well-preserved, and away from later (8-cell and 16-cell) cleavage stages, which tend to exhibit evidence for slight to intense levels of organic decay. In addition, the natural abundances of these embryos tend to decrease with advancement in cleavage stage, and no evidence of more advanced (beyond 16-cell) cleavage stages or eventual adult forms were found in this study. One possible explanation for this taphonomic bias toward early cleavage stages is that later cleavage stages and adult forms were more physically delicate, allowing them to be more easily damaged during burial and reworking, allowing for more rapid decay. The spectacular preservation of these embryos was probably aided by their likely internal enrichment in phosphate-rich yolk, which would have caused their internal dissolved phosphate levels to reach critical levels with only miniscule organic decay, thereby hastening phosphatization. If internal sources of phosphate did indeed play a role in the phosphatization of these embryos, it may explain their prolific abundance in these rocks compared to other phosphatized fossils as well as indicating that metazoans lacking such internal phosphate sources were likely much more difficult to preserve. The phosphatic fossils of the Doushantuo Formation, therefore, provide an indispensable, yet restricted, window into Neoproterozoic life and metazoan origins.     

贵州寒武纪杷榔组古蠕虫类埋藏特征及意义*

贵州剑河寒武纪杷榔组辣子寨剖面含有丰度较高的古蠕虫类化石。化石鉴定为Wronascolex geyiensis, 主要保存在三个层位。在对三个层位的岩石、沉积特征、化石成因及埋藏特征探讨分析后, 证实W. geyiensis化石保存于快速的沉积事件导致的浊流沉积层内, 而化石埋藏的完美程度受到成岩过程中埋藏位置、沉积物中矿物结晶和充填方式的影响, 这些后期的成岩、成矿作用对先期形成的化石精细结构产生了直接和间接的破坏作用。本文通过对W. geyiensis化石体上黏土矿物、草莓状黄铁矿、自形–半自形黄铁矿的成因分析后, 获得最适合保存软躯体化石的环境应该为缺氧且生物体与孔隙水中的硫酸盐无接触的原地和近原地埋藏条件。     

Effaced preservation in the Ediacara biota and its implications for the early macrofossil record

Abstract: Ediacaran structures known as ‘pizza discs’ or Ivesheadia have long been considered enigmatic. They are amongst the oldest known members of the Ediacara biota, apparently restricted to the Avalonian successions of Newfoundland and the UK, c. 579–560 Ma. Here, we suggest that these impressions are taphomorphs, resulting from the post‐mortem decay of the frondose Ediacaran biota. Ediacaran fossils range from well‐preserved, high‐fidelity variants to almost completely effaced specimens. The effaced specimens are inferred to have undergone modification of their original morphology by post‐mortem microbial decay on the sea floor, combined with sediment trapping and binding. In this style of preservation, morphological details within the organism became variously subdued as a function of the extent of organic decay prior to casting by overlying sediments. Decay and effacement were progressive in nature, producing a continuum of grades of preservation on Ediacaran bedding planes. Fossils preserved by such ‘effaced preservation’ are those that have suffered these processes to the extent that only their gross form can be determined. We suggest that the lack of detailed morphology in effaced specimens renders such fossils unsuitable for use as type material, as it is possible that several taxa may, upon degradation and burial, generate similar morphological taphomorphs. We here reinterpret the genus Ivesheadia as a taphomorph resulting from extensive post‐mortem decay of frondose organisms. Blackbrookia, Pseudovendia and Shepshedia from beds of comparable age in England are likewise regarded as taphomorphs broadly related to Charnia or Charniodiscus spp. To reflect the suggestion that such impressions are likely to be taphomorphs, and not taxonomically discrete, we propose the term ivesheadiomorphs to incorporate all such effaced taphonomic expressions of Ediacaran macrofossil taxa in Avalonian assemblages. Our recognition of effaced preservation has significant implications for Ediacaran taxonomy, and consequently for measures of Ediacaran diversity and disparity. It is implied that Avalonian assemblages preserve both organisms that were alive and organisms that were already dead at the time of burial. As such, the fossil assemblages cannot be taken to represent census populations of living organisms, as in prior interpretations.     

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

The identification and application of reliable fossil calibrations represents a key component of many molecular studies of evolutionary timescales. In studies of plants, most paleontological calibrations are associated with macrofossils. However, the pollen record can also inform age calibrations if fossils matching extant pollen groups are found. Recent work has shown that pollen of the myrtle family, Myrtaceae, can be classified into a number of morphological groups that are synapomorphic with molecular groups. By assembling a data matrix of pollen morphological characters from extant and fossil Myrtaceae, we were able to measure the fit of 26 pollen fossils to a molecular phylogenetic tree using parsimony optimisation of characters. We identified eight Myrtaceidites fossils as appropriate for calibration based on the most parsimonious placements of these fossils on the tree. These fossils were used to inform age constraints in a Bayesian phylogenetic analysis of a sequence alignment comprising two sequences from the chloroplast genome (matK and ndhF) and one nuclear locus (ITS), sampled from 106 taxa representing 80 genera. Three additional analyses were calibrated by placing pollen fossils using geographic and morphological information (eight calibrations), macrofossils (five calibrations), and macrofossils and pollen fossils in combination (12 calibrations). The addition of new fossil pollen calibrations led to older crown ages than have previously been found for tribes such as Eucalypteae and Myrteae. Estimates of rate variation among lineages were affected by the choice of calibrations, suggesting that the use of multiple calibrations can improve estimates of rate heterogeneity among lineages. This study illustrates the potential of including pollen-based calibrations in molecular studies of divergence times.     

New Silurian cooksonias from dolostones of north-eastern North America

New specimens of Cooksonia and Hostinella are described from the Bertie Group of Ontario and New York State, which is dated by faunas as latest Silurian (Přídolí). The rare plant fossils are unusual in that they are preserved in fine-grained, slightly argillaceous dolostones ('waterlime') rather than clastic rocks. At least two species of Cooksonia are present, one with ± globular sporangial morphology close to C. hemisphaerica Lang. Those with ellipsoidal/discoidal sporangia are compared with C. pertoni Lang, C .  paranensis Gerrienne et al . and C. bohemica Schweitzer, the latter represented by a single specimen from the Přídolí of the Czech Republic. However, the paucity of specimens, which prevents assessment of taphonomic influences on shape, combined with the absence of any anatomical features and the gross morphological simplicity of the fossils, precludes specific assignment. Specimens of Hostinella include one in which apices and a lateral basal structure resembling a root are preserved. It is concluded that the Laurentian assemblage of Ontario and New York State is less diverse and disparate than coeval assemblages, which are also preserved in marine rocks. Its preservation in limestones may have been facilitated by the hypersalinity inferred from various sedimentary features, which would restrict the activity of many decomposers.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 146 , 399–413.     

Diverse bryophyte mesofossils from the Triassic of Antarctica

Compared with the fossil record of vascular plants, bryophyte fossils are rare; this circumstance is probably related to a lower preservation potential compared with that of vascular plants. We searched for bryophyte remains in extensive collections of plant‐fossil assemblages from the Triassic of Antarctica and identified three assemblages with surprisingly well‐preserved bryophyte fossils. Although most bryophyte remains are too fragmented to conclusively place them in a detailed systematic context, they exhibit features sufficient to suggest the presence of at least four types of leafy bryophytes and two orders of thallose liverworts (Pallaviciniales and Metzgeriales) in the high‐latitude Triassic ecosystems of Antarctica. The leafy bryophytes exhibit combinations of morphological features (e.g. keeled and entire‐margined, ecostate leaves with elongated cells) that today occur in only a few small, systematically isolated groups, but were common among Palaeozoic and especially Mesozoic bryophytes. The diverse morphologies of the bryophyte fossils add further support to previous hypotheses that during warmer periods in the Earth's history, bryophyte vegetation may have been particularly rich and diverse in high‐latitude regions. Through analysis of the sedimentology and taphonomy of these assemblages, we identify a combination of key factors that may explain the preservation of bryophyte fossils in these deposits: (1) punctuated, high‐energetic sedimentary events causing traumatic removal and incorporation of bryophytes into sediment‐laden flood waters; (2) limited transport distance, and short period of suspension, followed by rapid settling and burial as a result of a rapidly decelerating flow discharging into a floodplain environment; and (3) early‐diagenetic cementation with iron hydroxides in locally anoxic zones of the organic‐rich, muddy substrate.     

Chemical preservation of plants and insects in natural resins

The morphological preservation of fossils in amber is remarkable, but their chemical composition is largely unknown. The likelihood of DNA preservation in amber has been questioned but, surprisingly, the fate of more decay-resistant macromolecules such as ligno-cellulose in plants or the chitin–protein complex in insect cuticle has not been investigated. Here we report the results of investigations using pyrolysis-gas chromatography/mass spectrometry (py-GC/MS) of the tissues of insects and the plant Hymenaea from ancient and sub-fossil resins (2–20 ka) from Kenya, and from Dominican amber (25–30 Ma). The volatile components of the resin have penetrated even the internal tissues, resulting in the exceptional three-dimensional preservation of amber inclusions. Chitin is preserved in the bee and ligno-cellulose in the Hymenaea leaf from the Kenyan resins. There was no trace, however, of these macromolecules in tissues in Dominican amber. The presence of aliphatic polymer and sulphur-containing moieties in these tissues indicates that they have undergone diagenetic alteration; in view of this, the preservation in Dominican amber of a macromolecule as labile as DNA would be extraordinary.     

Experimental subaqueous burial of a bird carcass and compaction of plumage

‘Exceptional fossils’ of dinosaurs preserving feathers have radically changed the way we view their paleobiology and the evolution of birds. Understanding how such soft tissues preserve is imperative to accurately interpreting the morphology of fossil feathers. Experimental taphonomy has been integral to such investigations. One such experiment used a printing press to mimic compaction, done subaerially and without sediment burial, and concluded that the leaking of bodily fluid could lead to the clumping of feathers by causing barbs to stick together such that they superficially resemble simpler, less derived, filamentous structures. Here we use a novel, custom-built experimental setup to more accurately mimic subaqueous burial and compaction under low-energy, fine-grain depositional environments applicable to the taphonomic settings most plumage-preserving ‘exceptional fossils’ are found in. We find that when submerged and subsequently buried and compacted, feathers do not clump together and they maintain their original arrangement. Submersion in fluid in and of itself does not lead to clumping of barbs; this would only occur upon pulling feathers out from water into air. Furthermore, sediment encases the feathers, fixing them in place during compaction. Thus, feather clumping that leads to erroneously plesiomorphic morphological interpretations may not be a taphonomic factor of concern when examining fossil feathers. Our current methodology is amenable to further improvements that will continue to more accurately mimic subaqueous burial and compaction, allowing for various hypothesis testing.     

寒武纪早期岩家河生物群:研究进展和展望*

埃迪卡拉纪-寒武纪转换时期动物的起源、演化和"寒武纪大爆发"一直是国际古生物学界研究的热点问题,其中寒武纪早期小壳化石群与埃迪卡拉纪化石群和寒武纪早期澄江化石库之间的内在关系是古生物学界研究的难题,其主要原因是寒武纪早期与小壳化石群伴生的宏体动、植物化石的缺乏。发现于峡东地区的寒武纪早期岩家河生物群填补了这一缺失环节,该生物群包含宏体动物、宏观藻类、小壳化石、球形化石(可能的胚胎化石)、微古植物和蓝菌类等化石,部分宏体化石显示了从埃迪卡拉纪向寒武纪过渡色彩。化石保存方式有碳质膜、黄铁矿化、磷酸盐化、硅化。因此对岩家河生物群生物多样性和埋藏学进行综合研究,将可提供纽芬兰世(梅树村期)碳酸盐台地—碳酸盐台地内部的局部凹陷盆地相的一个较完整的生物景观图,对探索"寒武纪大爆发主幕"前夕生物的辐射、演化模式及保存机制具有重要的科学意义。     

Microfossils

Defining biosignatures, i.e. features that are indicative of past or present life, has been one of the major strategies developed over the last few years for the search of life on the early Earth and in the solar system. Current knowledge about microscopic remnants of fossil organisms, namely microfossils are reviewed, focusing on: (i) studies of recent environments used as analogues for the early Earth or extraterrestrial environments; (ii) examination of Precambrian rocks; and (iii) laboratory experiments simulating biotic and abiotic processes and resulting in the formation of genuine or pseudomicrofossils. Fossils’ preservation depends on environment and chemical composition of the primary structure, although they might undergo taphonomic processes that alter their morphology and/or composition. Altogether, these examples illustrate what can be potentially preserved during the very first stages of fossilization and what can be left in the geological record after diagenesis and metamorphism. Finally, this provides a rationale to tentatively define diagnosis criteria for microfossils or ways to look for life on Earth or in extraterrestrial environments.     

Eukaryotic Algae Associated with Mid-Proterozoic Black Chert in Northern China

During the past two decades, Precambrian research, especially in the respect of the occurfence of microbial fossils in silicified rocks has been achieved. It is still in argument, however, at what time the origin of the eukaryote, one of the major events in biological evolution appeared according to the different criteria of the low, er eukaryotic organism fossils identified. The difference between prokaryotic and eukaryotic algal fossils in the cell size of structure and morphological colony and the model of their reproduction in biologic evolution is interpreted based on the knowledge about living lower organisms in this paper. Eight genera and eight species of eukaryotic algal fossils, including three genera and three species (Proto- cosmarium panduratum, Closteriopsis taihangensis and Phyllophycoma sinensis) newly descover ed in black stromatolitic chert from Gaoyuzhuang Formation, Lingqiu, Shanxi Province, China, which is about 1,400–1,600 My in age are described and named. All of these are characterized by the big cell size and complex structure of colony in which the cells have been divided into different function in physiology, and some of them produce endospore and autospore which are comparable with their mother cell or colony in morphology. According to the morphological characters of complex and diverse microfossils, it is assumed that the evolution of eukaryotic organisms had been achieved and even evolved up to a higher level at least before 1,600 million years.     

Eocene tortoise beetles from the Green River Formation in Colorado,U.S.A. (Coleoptera: Chrysomelidae: Cassidinae)

Abstract The fossil history of leaf beetles (Chrysomelidae) is relatively poorly documented despite an abundance of available material. Of particular interest is the origin and radiation of the diverse tortoise beetles, a derived group within Cassidinae s.l. (=Cassidinae + Hispinae) defined by the exophagous life history and specialized morphology of the immature stages. Cassidinae is also a group with relatively few fossil records that can be assigned with any degree of certainty. Here we report two of the oldest definitive tortoise beetle fossils, Eosacantha delocranioides gen.n. et sp.n. and Denaeaspis chelonopsis gen.n. et sp.n. , from the Eocene Green River Formation (ca. 47 million years old) in northwestern Colorado, U.S.A. Owing to the fine level of preservation, many important features can be observed and are coded into the recent cladistic analysis for the subfamily. Phylogenetic analysis highlights that both genera have affinities with modern lineages, one restricted to the Old World and the other restricted to the Neotropics. Although Cassidinae as a whole extend into the Cretaceous, the available information suggests that the tortoise beetles perhaps originated and diversified during the Early Tertiary. As such, the morphological and biological transitions from the leaf‐mining hispiforms to the distinctive tortoise‐like cassidiforms, with their elaborate defensive larval shields and other unique behaviours, probably took place during the latest Paleocene or earliest Eocene. These Green River fossils are the oldest yet to document the specialized morphology associated with the transition in cassidine feeding and immature biology.     

Enigmatic gymnosperms? Structurally preserved Permian and Triassic seed ferns from Antarctica

Representative organs from the seed fern groups Glossopteridales and Corystospermales are commonly found in Gondwana during the Permian and Triassic, respectively. To date, both groups have been reconstructed predominantly on the basis of compression fossils and, in the case of the glossopterids, impressions. As a result, many details of their morphology remain unclear, and their taxonomic status and relationship to other groups are somewhat enigmatic. Collections of anatomically preserved fossils from permineralized peat in the central Transantarctic Mountains, Antarctica include a number of organs assignable to these two orders. Anatomical characters provide an opportunity to correlate isolated plant organs and to develop new reconstructions of these plants. Combined with paleoecological data, these fossils are beginning to provide a more accurate picture of the habitat and life history of these unique seed plants.     

Molecular taphonomy of animal and plant cuticles: selective preservation and diagenesis

The nature of organic material and the environment in which it is deposited exert a major influence on the extent to which biomacromolecules are preserved in the fossil record. The role of these factors is explored with a particular focus on the cuticle of arthropods and leaves. Preservation of the original chemistry of arthropod cuticles is favoured by their thickness and degree of sclerotization, and the presence of biominerals. Decay and burial in terrestrial as opposed to marine, and anoxic rather than oxygenated conditions, likewise appear to enhance preservation. The most important factor in the long-term preservation of the chemistry of both animal and plant cuticles, however, is diagenetic alteration to an aliphatic composition. This occurs even in amber, which encapsulates the fossil, eliminating almost all external factors. Some plants contain an original decay-resistant macromolecular aliphatic component but this is not the case in arthropods. It appears that the aliphatic components of many plant as well as animal fossils may be the result of diagenetic polymerization. Selective preservation as a result of decay resistance may explain the initial survival of organic materials in sediments, but in many cases longer-term preservation relies on chemical changes. Selective preservation is only a partial explanation for the origin of kerogen.