FLUXNET and modelling the global carbon cycle

Measurements of the net CO₂ flux between terrestrial ecosystems and the atmosphere using the eddy covariance technique have the potential to underpin our interpretation of regional CO₂ source–sink patterns, CO₂ flux responses to forcings, and predictions of the future terrestrial C balance. Information contained in FLUXNET eddy covariance data has multiple uses for the development and application of global carbon models, including evaluation/validation, calibration, process parameterization, and data assimilation. This paper reviews examples of these uses, compares global estimates of the dynamics of the global carbon cycle, and suggests ways of improving the utility of such data for global carbon modelling. Net ecosystem exchange of CO₂ (NEE) predicted by different terrestrial biosphere models compares favourably with FLUXNET observations at diurnal and seasonal timescales. However, complete model validation, particularly over the full annual cycle, requires information on the balance between assimilation and decomposition processes, information not readily available for most FLUXNET sites. Site history, when known, can greatly help constrain the model‐data comparison. Flux measurements made over four vegetation types were used to calibrate the land‐surface scheme of the Goddard Institute for Space Studies global climate model, significantly improving simulated climate and demonstrating the utility of diurnal FLUXNET data for climate modelling. Land‐surface temperatures in many regions cool due to higher canopy conductances and latent heat fluxes, and the spatial distribution of CO₂ uptake provides a significant additional constraint on the realism of simulated surface fluxes. FLUXNET data are used to calibrate a global production efficiency model (PEM). This model is forced by satellite‐measured absorbed radiation and suggests that global net primary production (NPP) increased 6.2% over 1982–1999. Good agreement is found between global trends in NPP estimated by the PEM and a dynamic global vegetation model (DGVM), and between the DGVM and estimates of global NEE derived from a global inversion of atmospheric CO₂ measurements. Combining the PEM, DGVM, and inversion results suggests that CO₂ fertilization is playing a major role in current increases in NPP, with lesser impacts from increasing N deposition and growing season length. Both the PEM and the inversion identify the Amazon basin as a key region for the current net terrestrial CO₂ uptake (i.e. 33% of global NEE), as well as its interannual variability. The inversion's global NEE estimate of −1.2 Pg [C] yr⁻¹ for 1982–1995 is compatible with the PEM‐ and DGVM‐predicted trends in NPP. There is, thus, a convergence in understanding derived from process‐based models, remote‐sensing‐based observations, and inversion of atmospheric data. Future advances in field measurement techniques, including eddy covariance (particularly concerning the problem of night‐time fluxes in dense canopies and of advection or flow distortion over complex terrain), will result in improved constraints on land‐atmosphere CO₂ fluxes and the rigorous attribution of mechanisms to the current terrestrial net CO₂ uptake and its spatial and temporal heterogeneity. Global ecosystem models play a fundamental role in linking information derived from FLUXNET measurements to atmospheric CO₂ variability. A number of recommendations concerning FLUXNET data are made, including a request for more comprehensive site data (particularly historical information), more measurements in undisturbed ecosystems, and the systematic provision of error estimates. The greatest value of current FLUXNET data for global carbon cycle modelling is in evaluating process representations, rather than in providing an unbiased estimate of net CO₂ exchange.     

Steady state terrestrial ecosystems and the global carbon cycle

The assumption that landscapes dominated by mature vegetation are presently in carbon steady state with the atmosphere is challenged. Evidence suggests that the vegetation and soils of these landscapes are frequently disturbed and over short time periods (<300 yr) slowly sequester atmospheric carbon. The critical consideration in this argument is the time interval used to evaluate a steady state. Current models of carbon flux through the terrestrial biota limit their time considerations to 120 yr, a short and inadequate time interval for realistic assumptions about steady state in the carbon cycle of vegetation.Research performed under subcontract 19B-07762C with S. Brown and 19X-43326C with the Center for Energy and Environment Research of the University of Puerto Rico (A. E. Lugo) under Martin Marietta Energy Systems, Inc., contract DE-AC05-840R21400 with the U.S. Department of Energy.     

Soil respiration of forest ecosystems in Japan and global implications

Within terrestrial ecosystems, soil respiration is one of the largest carbon flux components. We discuss the factors controlling soil respiration, while focusing on research conducted at the Takayama Experimental Site. Soil respiration was affected by soil temperature, soil moisture, rainfall events, typhoons, and root respiration. We consider the temporal and spatial variability of soil respiration at the Takayama Experimental Site and review the variability of annual soil respiration in Japanese forests. In the 26 compiled studies, the values of annual soil respiration ranged from 203 to 1,290 g C m⁻² year⁻¹, with a mean value of 669 g C m⁻² year⁻¹ (SD=264, CV=40). We note the need for more studies and data synthesis for the accurate prediction of soil respiration and soil carbon dynamics in Japanese forests. Finally, several methods for measuring soil respiration rates are compared and the implications of soil respiration rates for global climate change are discussed.     

Forests and swamps of Siberia in the global carbon cycle

Results of measurements and calculations of carbon budget parameters of forests and swamps of Siberia are reported. The zonal variability of reserves (and an increment in reserves) of carbon in forest and swamp ecosystems is characterized, carbon dioxide fluxes are measured directly by means of microeddy pulsations, and an uncertainty brought into the calculation of carbon budget parameters by forest fires is estimated.     

森林土壤呼吸及其对全球变化的响应

森林土壤呼吸是全球碳循环的重要流通途径之一 ,其动态变化将直接影响全球 C平衡。森林土壤呼吸由自养呼吸和异养呼吸组成 ,不同森林类型、测定季节和测定方法等直接影响其所占比例。土壤温度和湿度是影响森林土壤呼吸的最主要因素 ,共同解释了森林土壤呼吸变化的大部分。因树种组成、生产力和枯落物数量等不同而使不同森林类型土壤呼吸速率表现出明显差异。采伐对森林土壤呼吸的影响结果有增加、降低或无影响 ,因采伐方式、森林类型、采伐迹地上植被恢复进程和气候条件等而异。火烧一般导致土壤呼吸速率降低。因肥料种类、施用剂量和立地条件不同 ,施肥对森林土壤呼吸的影响出现增加、降低或无影响等不同结果。大气 CO2 浓度升高和升温均可促进森林土壤呼吸。 N沉降有可能刺激了土壤呼吸 ,而酸沉降则可能降低了土壤呼吸。臭氧浓度和 UV-B辐射强度亦会在一定程度上影响森林土壤呼吸。但目前全球变化对森林土壤呼吸的综合影响尚不清楚 ,深入探讨森林土壤呼吸的调控因素及其对全球变化和营林措施的响应等仍是今后努力的主要方向。     

Significance of ocean carbonate budgets for the global carbon cycle

Changes in the trace gas composition of the atmosphere over glacial–interglacial cycles are linked to changes in the oceanic carbon cycle. This paper examines the role of biologically driven fluxes of organic and inorganic carbon in modifying the carbon dioxide chemistry of the oceans, and the corresponding implications for the partitioning of CO₂ between the atmosphere and ocean. Relevant details of the marine carbon system are presented together with an assessment of the significance of remineralization and dissolution processes. Recent estimates of the marine carbonate fluxes show significant uncertainties and inconsistencies which must be resolved in order to assess fully the role of the oceans' biota in the marine carbon system. Various types of ocean carbon cycle models have been developed in order to interpret the changes in past atmospheric carbon dioxide. Some take account of the role of the oceans' biota, focussing in the main on the cycling of organic matter. Relatively few have considered the role of the carbonate pump and the subtle interactions between organic and inorganic carbon cycling. The significance of carbonate formation and dissolution, and of the effects of global change on the marine carbonate system, for air–sea fluxes of CO₂ are discussed. Finally some recommendations for future research are made in order to improve our understanding of how spatial and temporal variation in marine carbonate fluxes, in conjunction with processes determining the oxidation and burial of organic matter in the oceans, affect levels of CO₂ in the atmosphere.     

Dynamic disequilibrium of the terrestrial carbon cycle under global change

In this review, we propose a new framework, dynamic disequilibrium of the carbon cycles, to assess future land carbon-sink dynamics. The framework recognizes internal ecosystem processes that drive the carbon cycle toward equilibrium, such as donor pool-dominated transfer; and external forces that create disequilibrium, such as disturbances and global change. Dynamic disequilibrium within one disturbance-recovery episode causes temporal changes in the carbon source and sink at yearly and decadal scales, but has no impacts on longer-term carbon sequestration unless disturbance regimes shift. Such shifts can result in long-term regional carbon loss or gain and be quantified by stochastic statistics for use in prognostic modeling. If the regime shifts result in ecosystem state changes in regions with large carbon reserves at risk, the global carbon cycle might be destabilized.     

Land use change and the global carbon cycle: the role of tropical soils

Millions of hectares of tropical forest are cleared annually for agriculture, pasture, shifting cultivation and timber. One result of these changes in land use is the release of CO₂ from the cleared vegetation and soils. Although there is uncertainty as to the size of this release, it appears to be a major source of atmospheric CO₂, second only to the release from the combustion of fossil fuels. This study estimates the release of CO₂ from tropical soils using a computer model that simulates land use change in the tropics and data on (1) the carbon content of forest soils before clearing; (2) the changes in the carbon content under the various types of land use; and (3) the area of forest converted to each use. It appears that the clearing and use of tropical soils affects their carbon content to a depth of about 40 cm. Soils of tropical closed forests contain approximately 6.7 kg C · m^-2; soils of tropical open forests contain approximately 5.2 kg C · m^-2 to this depth. The cultivation of tropical soils reduces their carbon content by 40% 5 yr after clearing; the use of these soils for pasture reduces it by about 20%. Logging in tropical forests appears to have little effect on soil carbon. The carbon content of soils used by shifting cultivators returns to the level found under primary forest about 35 yr after abandonment. The estimated net release of carbon from tropical soils due to land use change was 0.11–0.26 × 10¹⁵ g in 1980.     

Integrating plant–soil interactions into global carbon cycle models

1.  Plant–soil interactions play a central role in the biogeochemical carbon (C), nitrogen (N) and hydrological cycles. In the context of global environmental change, they are important both in modulating the impact of climate change and in regulating the feedback of greenhouse gas emissions (CO₂, CH₄ and N₂O) to the climate system.
2.  Dynamic global vegetation models (DGVMs) represent the most advanced tools available to predict the impacts of global change on terrestrial ecosystem functions and to examine their feedbacks to climate change. The accurate representation of plant–soil interactions in these models is crucial to improving predictions of the effects of climate change on a global scale.
3.  In this paper, we describe the general structure of DGVMs that use plant functional types (PFTs) classifications as a means to integrate plant–soil interactions and illustrate how models have been developed to improve the simulation of: (a) soil carbon dynamics, (b) nitrogen cycling, (c) drought impacts and (d) vegetation dynamics. For each of these, we discuss some recent advances and identify knowledge gaps.
4.  We identify three ongoing challenges, requiring collaboration between the global modelling community and process ecologists. First, the need for a critical evaluation of the representation of plant–soil processes in global models; second, the need to supply and integrate knowledge into global models; third, the testing of global model simulations against large-scale multifactor experiments and data from observatory gradients.
5.   Synthesis . This paper reviews how plant–soil interactions are represented in DGVMs that use PFTs and illustrates some model developments. We also identify areas of ecological understanding and experimentation needed to reduce uncertainty in future carbon coupled climate change predictions.     

High microbial activity on glaciers: importance to the global carbon cycle

Cryoconite holes, which can cover 0.1–10% of the surface area of glaciers, are small, water-filled depressions (typically <1 m in diameter and usually <0.5 m deep) that form on the surface of glaciers when solar-heated inorganic and organic debris melts into the ice. Recent studies show that cryoconites are colonized by a diverse range of microorganisms, including viruses, bacteria and algae. Whether microbial communities on the surface of glaciers are actively influencing biogeochemical cycles or are just present in a dormant state has been a matter of debate for long time. Here, we report primary production and community respiration of cryoconite holes upon glaciers in Svalbard, Greenland and the European Alps. Microbial activity in cryoconite holes is high despite maximum temperatures seldom exceeding 0.1 °C. In situ primary production and respiration in cryoconites during the summer is often comparable with that found in soils in warmer and nutrient richer regions. Considering only glacier areas outside Antarctica and a conservative average cryoconite distribution on glacial surfaces, we found that on a global basis cryoconite holes have the potential to fix as much as 64 Gg of carbon per year (i.e. 98 Gg of photosynthesis minus 34 Gg of community respiration). Most lakes and rivers are generally considered as heterotrophic systems, but our results suggest that glaciers, which contain 75% of the freshwater of the planet, are largely autotrophic systems.     

Soil respiration of Alaskan tundra at elevated atmospheric carbon dioxide concentrations

Summary CO₂ efflux from tussock tundra in Alaska that had been exposed to elevated CO₂ for 2.5 growing seasons was measured to assess the effect of long- and short-term CO₂ enrichment on soil respiration. Long-term treatments were: 348, 514, and 683 μll⁻¹ CO₂ and 680 μll⁻¹ CO₂+4°C above ambient. Measurements were made at 5 CO₂ concentrations between 87 and 680 μll⁻¹ CO₂. Neither long- or short-term CO₂ enrichment significantly affected soil CO₂ efflux. Tundra developed at elevated temperature and 680 μll⁻¹ CO₂ had slightly higher, but not statistically different, mean respiration rates compared to untreated tundra and to tundra under CO₂ control alone.     

Soil respiration in northern forests exposed to elevated atmospheric carbon dioxide and ozone

The aspen free-air CO₂ and O₃ enrichment (FACTS II–FACE) study in Rhinelander, Wisconsin, USA, is designed to understand the mechanisms by which young northern deciduous forest ecosystems respond to elevated atmospheric carbon dioxide (CO₂) and elevated tropospheric ozone (O₃) in a replicated, factorial, field experiment. Soil respiration is the second largest flux of carbon (C) in these ecosystems, and the objective of this study was to understand how soil respiration responded to the experimental treatments as these fast-growing stands of pure aspen and birch + aspen approached maximum leaf area. Rates of soil respiration were typically lowest in the elevated O₃ treatment. Elevated CO₂ significantly stimulated soil respiration (8–26%) compared to the control treatment in both community types over all three growing seasons. In years 6–7 of the experiment, the greatest rates of soil respiration occurred in the interaction treatment (CO₂ + O₃), and rates of soil respiration were 15–25% greater in this treatment than in the elevated CO₂ treatment, depending on year and community type. Two of the treatments, elevated CO₂ and elevated CO₂ + O₃, were fumigated with ¹³C-depleted CO₂, and in these two treatments we used standard isotope mixing models to understand the proportions of new and old C in soil respiration. During the peak of the growing season, C fixed since the initiation of the experiment in 1998 (new C) accounted for 60–80% of total soil respiration. The isotope measurements independently confirmed that more new C was respired from the interaction treatment compared to the elevated CO₂ treatment. A period of low soil moisture late in the 2003 growing season resulted in soil respiration with an isotopic signature 4–6‰ enriched in ¹³C compared to sample dates when the percentage soil moisture was higher. In 2004, an extended period of low soil moisture during August and early September, punctuated by a significant rainfall event, resulted in soil respiration that was temporarily 4–6‰ more depleted in ¹³C. Up to 50% of the Earth’s forests will see elevated concentrations of both CO₂ and O₃ in the coming decades and these interacting atmospheric trace gases stimulated soil respiration in this study.     

Soil respiration and carbon balance in a subtropical native forest and two managed plantations

From 1999 to 2003, a range of carbon fluxes was measured and integrated to establish a carbon balance for a natural evergreen forest of Castanopsis kawakamii (NF) and adjacent monoculture evergreen plantations of C. kawakamii (CK) and Chinese fir (Cunninghamia lanceolata, CF) in Sanming Nature Reserve, Fujian, China. Biomass carbon increment of aboveground parts and coarse roots were measured by the allometric method. Above- and belowground litter C inputs were assessed by litter traps and sequential cores, respectively. Soil respiration (SR) was determined by the alkaline absorbance method, and the contribution from roots, above- and belowground litters was separated by the DIRT plots. Annual SR averaged 13.742 t C ha⁻¹ a⁻¹ in the NF, 9.439 t C ha⁻¹ a⁻¹ in the CK, and 4.543 t C ha⁻¹ a⁻¹ in the CF. For all forests, SR generally peaked in later spring or early summer (May or June). The contribution of root respiration ranged from 47.8% in the NF to 40.3% in the CF. On average, soil heterotrophic respiration (HR) was evenly distributed between below- (47.3∼54.5%) and aboveground litter (45.5%–52.7%). Annual C inputs (t C ha⁻¹ a⁻¹) from litterfall and root turnover averaged 4.452 and 4.295, 4.548 and 2.313, and 2.220 and 1.265, respectively, in the NF, CK, and CF. As compared to HR, annual net primary production (NPP) of 11.228, 13.264, and 6.491 t C ha⁻¹ a⁻¹ in the NF, CK, and CF brought a positive net ecosystem production (NEP) of 4.144, 7.514, and 3.677 t C ha⁻¹ a⁻¹, respectively. It suggests that native forest in subtropical China currently acts as an important carbon sink just as the timber plantation does, and converting native forest to tree plantations locally during last decades might have caused a high landscape carbon loss to the atmosphere.     

The impact of Indonesian peatland degradation on downstream marine ecosystems and the global carbon cycle

Tropical peatlands are among the most space‐efficient stores of carbon on Earth containing approximately 89 Gt C. Of this, 57 Gt (65%) are stored in Indonesian peatlands. Large‐scale exploitation of land, including deforestation and drainage for the establishment of oil palm plantations, is changing the carbon balance of Indonesian peatlands, turning them from a natural sink to a source via outgassing of CO₂ to the atmosphere and leakage of dissolved organic carbon (DOC) into the coastal ocean. The impacts of this perturbation to the coastal environment and at the global scale are largely unknown. Here, we evaluate the downstream effects of released Indonesian peat carbon on coastal ecosystems and on the global carbon cycle. We use a biogeochemical box model in combination with novel and literature observations to investigate the impact of different carbon emission scenarios on the combined ocean–atmosphere system. The release of all carbon stored in the Indonesian peat pool, considered as a worst‐case scenario, will increase atmospheric pCO₂ by 8 ppm to 15 ppm within the next 200 years. The expected impact on the Java Sea ecosystems is most significant on the short term (over a few hundred years) and is characterized by an increase of 3.3% in phytoplankton, 32% in seagrass biomass, and 5% decrease in coral biomass. On the long term, however, the coastal ecosystems will recover to reach near pre‐excursion conditions. Our results suggest that the ultimate fate of the peat carbon is in the deep ocean with 69% of it landing in the deep DIC pool after 1000 years, but the effects on the global ocean carbonate chemistry will be marginal.     

Tropical forests and the global carbon cycle: impacts of atmospheric carbon dioxide, climate change and rate of deforestation

The remaining carbon stocks in wet tropical forests are currently at risk because of anthropogenic deforestation, but also because of the possibility of release driven by climate change. To identify the relative roles of CO2 increase, changing temperature and rainfall, and deforestation in the future, and the magnitude of their impact on atmospheric CO2 concentrations, we have applied a dynamic global vegetation model, using multiple scenarios of tropical deforestation (extrapolated from two estimates of current rates) and multiple scenarios of changing climate (derived from four independent offline general circulation model simulations). Results show that deforestation will probably produce large losses of carbon, despite the uncertainty about the deforestation rates. Some climate models produce additional large fluxes due to increased drought stress caused by rising temperature and decreasing rainfall. One climate model, however, produces an additional carbon sink. Taken together, our estimates of additional carbon emissions during the twenty-first century, for all climate and deforestation scenarios, range from 101 to 367 Gt C, resulting in CO2 concentration increases above background values between 29 and 129 p.p.m. An evaluation of the method indicates that better estimates of tropical carbon sources and sinks require improved assessments of current and future deforestation, and more consistent precipitation scenarios from climate models. Notwithstanding the uncertainties, continued tropical deforestation will most certainly play a very large role in the build-up of future greenhouse gas concentrations.