Seasonal variation in patch use in a tropical African environment

We used giving-up densities (GUD) to study patch use decisions of small granivorous passerines throughout the year. We measured GUDs continuously in four sites for a period of 9–10 months per year during 2004 and 2005 in a savannah area in Jos, central Nigeria. The study thus covered a period from the middle of the dry season, through the wet season to the beginning of the next dry season in each year. We placed experimental food patches in both open areas and in cover to investigate possible effects of predation risk and thermal hazard on the foraging behavior of the birds. We found a difference in GUDs between the microhabitats, with a consistently lower GUD in cover throughout the year and for the two years. During both years GUDs followed a pattern coinciding with the seasonal change in local seed availability. An initial decline in GUDs late in the dry season was followed by a steady increase during and after the rains. A similar trend in GUDs observed for both years supports the conclusion that GUDs measure the feeding birds' assessment of environmental quality, possibly in combination with other factors changing predictably during the year. We conclude that food abundance may act with other environmental and ecological factors to affect foraging decisions throughout the year.     

The effect of internal and external factors on bovine embryo transfer results in a tropical environment

The objectives of this work were to determine the effect of external (synchronization methods, month, embryo origin and farm effects) and internal factors (age and size of CL, embryo development and quality score, synchronization methods, age of recipient, quality of transfer and reuse of recipients) on a commercial embryo transfer program in a tropical environment. In the program 1466 Holstein-Friesian purchased embryos were implanted to zebu/European crossbred recipients under field conditions. There were 502 pregnancies detected in this large-scale extension programme. Synchronization methods, month, embryo origin, and farm effects were found to have affected the success rate of embryo transfer. Due to the hot climate and large distances between recipient farms, seasonal effects, reused recipient pregnancy results and the effect of embryo development stage differed from previously reported results. Investigation by ultrasonograph showed that embryo loss occurred before 35 days of pregnancy. Under field conditions, routine fetal sexing resulted in <5% misidentification. In conclusion, under tropical conditions external factors have a major influence on the results of pregnancy from embryo transfer.     

Environmental factors explaining the vegetation patterns in a temperate peatland

Although ombrotrophic temperate peatlands are important ecosystems for maintaining biodiversity in eastern North America, the environmental factors influencing their flora are only partly understood. The relationships between plant species distribution and environmental factors were thus studied within the oldest temperate peatland of Québec. Plant assemblages were identified by cluster analysis while CCA was used to related vegetation gradients to environmental factors. Five assemblages were identified; three typical of open bog and two characterized by more minerotrophic vegetation. Thicker peat deposit was encounter underlying the bog assemblages while higher water table level and percentage of free surface water distinguished the minerotrophic assemblages. Overall, the floristic patterns observed were spatially structured along the margins and the expanse. The most important environmental factors explaining this spatial gradient were the percentage of free surface water and the highest water-table level. To cite this article: S. Pellerin et al., C. R. Biologies 332 (2009).     

Cape buffalo mitogenomics reveals a Holocene shift in the African human-megafauna dynamics

Africa is unique among the continents in having maintained an extraordinarily diverse and prolific megafauna spanning the Pleistocene-Holocene epochs. Little is known about the historical dynamics of this community and even less about the reasons for its unique persistence to modern times. We sequenced complete mitochondrial genomes from 43 Cape buffalo (Syncerus caffer caffer) to infer the demographic history of this large mammal. A combination of Bayesian skyline plots, simulations and Approximate Bayesian Computation (ABC) were used to distinguish population size dynamics from the confounding effect of population structure and identify the most probable demographic scenario. Our analyses revealed a late Pleistocene expansion phase concurrent with the human expansion between 80 000 and 10 000 years ago, refuting an adverse ecological effect of Palaeolithic humans on this quarry species, but also showed that the buffalo subsequently declined during the Holocene. The distinct two-phased dynamic inferred here suggests that a major ecological transition occurred in the Holocene. The timing of this transition coincides with the onset of drier conditions throughout tropical Africa following the Holocene Optimum (～9000-5000 years ago), but also with the explosive growth in human population size associated with the transition from the Palaeolithic to the Neolithic cultural stage. We evaluate each of these possible causal factors and their potential impact on the African megafauna, providing the first systematic assessment of megafauna dynamics on the only continent where large mammals remain abundant.     

Storms drive altitudinal migration in a tropical bird

Although migration is a widespread and taxonomically diverse behaviour, the ecological factors shaping migratory behaviour are poorly understood. Like other montane taxa, many birds migrate along elevational gradients in the tropics. Forty years ago, Alexander Skutch postulated that severe storms could drive birds to migrate downhill. Here, we articulate a novel mechanism that could link storms to mortality risks via reductions in foraging time and provide, to our knowledge, the first tests of this hypothesis in the White-ruffed Manakin (Corapipo altera), a small partially migratory frugivore breeding on the Atlantic slope of Costa Rica. As predicted, variation in rainfall was associated with plasma corticosterone levels, fat stores, plasma metabolites and haematocrit. By collecting data at high and low elevation sites simultaneously, we also found that high-elevation residents were more adversely affected by storms than low elevation migrants. These results, together with striking temporal capture patterns of altitudinal migrants relative to storms, provide, to our knowledge, the first evidence that weather-related risks incurred by species requiring high food intake rates can explain altitudinal migrations of tropical animals. These findings resolve conflicting evidence for and against food limitation being important in the evolution of this behaviour, and highlight how endogenous and exogenous processes influence life-history trade-offs made by individuals in the wild. Because seasonal storms are a defining characteristic of most tropical ecosystems and rainfall patterns will probably change in ensuing decades, these results have important implications for understanding the ecology, evolution and conservation of tropical animals.     

Evidence of history in explaining diversity patterns in tropical riverine fish

Aim Documentation of the ongoing effect of rain forest refuges at the last glacial maximum (LGM) on patterns of tropical freshwater fish diversity. Location Tropical South and Central America, and West Africa. Methods LGM rain forest regions and species richness by drainage were compiled from published data. GIS mapping was applied to compile drainage area and contemporary primary productivity. We used multiple regression analyses, applied separately for Tropical South America, Central America and West Africa, to assess differences in species richness between drainages that were connected and disconnected to rain forest refuge zones during the LGM. Spatial autocorrelation of the residuals was tested using Moran's I statistic. We added an intercontinental comparison to our analyses to see if a historical signal would persist even when a regional historical effect (climate at the LGM) had already been accounted for. Results Both area and history (contact with LGM rain forest refuge) explained the greatest proportions of variance in the geographical pattern of riverine species richness. In the three examined regions, we found highest richness in drainages that were connected to the rain forest refuges. No significant residual spatial autocorrelation was detected after considering area, primary productivity and LGM rain forest refuges. These results show that past climatic events still affect West African and Latin American regional and continental freshwater fish richness. At the continental scale, we found South American rivers more species‐rich than expected on the basis of their area, productivity and connectedness to rain forest refuge. Conversely, Central American rivers were less species‐diverse than expected by the grouped model. African rivers were intermediate. Therefore, a historical signal persists even when a regional historical effect (climate at the LGM) had already been accounted for. Main conclusions It has been hypothesized that past climatic events have limited impact on species richness because species have tracked environmental changes through range shifts. However, when considering organisms with physically constrained dispersal (such as freshwater fish), past events leave a perceptible imprint on present species diversity. Furthermore, we considered regions that have comparable contemporary climatic and environmental characteristics, explaining the absence of a productivity effect. From the LGM to the present day (a time scale of 18,000 years), extinction processes should have played a predominant role in shaping the current diversity pattern. By contrast, the continental effects could reflect historical contingencies explained by differences in speciation and extinction rates between continents at higher time scales (millions of years).     

Evidence of seasonal migration in a tropical subterranean vertebrate

Many animals undergo migrations that depend on a range of biotic or abiotic factors provoking daily, seasonal or annual movement of individuals and/or populations. Temperate amphibians frequently have their life cycles dominated by annual temperature fluctuations, but in the tropics it is often presumed that distinct rainy seasons will influence amphibians more than small changes in temperature. Here, we direct the seasonal changes in abundance hypothesis to a caecilian amphibian Boulengerula boulengeri found in monthly randomized quantitative surveys in the top 30 cm of soil. Meteorological data are used to interpret the significant changes found in relation to rainfall and temperature variables. Instead of the expected correlation of migration with rainfall, we find that frequency varies significantly and positively with temperature. In addition, data on the depth at which individual caecilians are collected suggest that animals undergo a vertical (rather than horizontal) migration within the soil. This is the first example of vertical migrations with temperature (as opposed to rainfall) of any tropical subterranean fauna. We discuss the possible influences that stimulate migration in this species (abiotic factors, feeding, reproduction and predation). The ecology of caecilians has lagged behind that of all other tetrapods, and this study has importance for future ecological studies, as well as biodiversity assessments and monitoring methodologies.     

Evaluating the protection of wildlife in parks: the case of African buffalo in Serengeti

Human population growth rates on the borders of protected areas in Africa are nearly double the average rural growth, suggesting that protected areas attract human settlement. Increasing human populations could be a threat to biodiversity through increases in illegal hunting. In the Serengeti ecosystem, Tanzania, there have been marked declines in black rhino (Diceros bicornis), elephant (Loxodonta africana) and African buffalo (Syncerus caffer) inside the protected area during a period when there was a reduction of protection through anti-poaching effort (1976–1996). Subsequently, protection effort has increased and has remained stable. During both periods there were major differences in population decline and recovery in different areas. The purpose of this paper is to analyse the possible causes of the spatial differences. We used a spatially structured population model to analyze the impacts of three factors—(i) hunting, (ii) food shortage and (iii) natural predation. Population changes were best explained by illegal hunting but model fit improved with the addition of predation mortality and the effect of food supply in areas where hunting was least. We used a GIS analysis to determine variation in human settlement rates and related those rates to intrinsic population changes in buffalo. Buffalo populations in close proximity to areas with higher rates of human settlement had low or negative rates of increase and were slowest to recover or failed to recover at all. The increase in human populations along the western boundary of the Serengeti ecosystem has led to negative consequences for wildlife populations, pointing to the need for enforcement of wildlife laws to mitigate these effects.     

Wet season range fidelity in a tropical migratory ungulate

1.?In migratory populations, the degree of fidelity and dispersal among seasonal ranges is an important population process with consequences for demography, management, sensitivity to habitat change and adaptation to local environmental conditions. 2.?Characterizing patterns of range fidelity in ungulates, however, has remained challenging because of the difficulties of following large numbers of marked individuals across multiple migratory cycles and of identifying the appropriate scale of analysis. 3.?We examined fidelity to wet season (i.e. breeding) ranges in a recently declining population of wildebeest Connochaetes taurinus Burchell in northern Tanzania across 3 years. We used computer-assisted photographic identification and capture-recapture to characterize return patterns to three wet season ranges that were ecologically discrete and topographically isolated from one another. 4.?Among 2557 uniquely identified adult wildebeest, we observed 150 recaptures across consecutive wet seasons. Between the two migratory subpopulations, the probability of remaining faithful to wet season areas ranged between 0·82 and 1·00. Animals from a non-migratory segment of the population (near Lake Manyara National Park) were rarely observed in other wet season ranges, despite proximity to one of the migratory pathways. 5.?We found no effect of sex on an individuals' probability of switching wet season ranges. However, the breeding status of females in year i had a strong influence on patterns of range selection in year i + 1, with surviving breeders over three times as likely to switch ranges as non-breeders. 6.?Social-group associations between pairs of recaptured animals were random with respect to an individual's wet season range during the previous or forthcoming wet seasons, suggesting that an individual's herd identity during the dry season does not predict wet season range selection. 7.?Examining fidelity and dispersal in terrestrial migrations improves our understanding of the constraints that migrants experience when they face rapid habitat changes or fluctuations in environmental conditions.     

Insect migration: Variability and success in a capricious environment

Stochastic effects of climate and weather have a pervasive influence on the induction, performance and evolution of migration. In wing-dimorphic species, their influence on habitat quality, and on rates of development of the migrant itself, maintains variation in responses to environmental cues determining wing-form and migratory behaviour. Migrants flying above their flight boundary layer rely on winds to disperse them across landscapes in which their habitats are distributed. Patterns of distribution of habitat patches, and the influence of changing windspeeds and direction on the displacements of migrants, result in selection for variation in migratory potential at each migration. In subsequent migrations, this variation and stochastic effects of the winds on groundtracks of individual migrants ensure that their destinations ‘sample’ the landscapes they travel over. The extent and resolution of this sampling, by which migrants reach favourable habitats, depend on the components of migratory potential, their mode of inheritance, and genetic correlations between them, as well as on the characteristics of the winds on which they travel.     

Major ion chemistry in a tropical African lake basin

SUMMARY. The amount of water lost by seepage from Lake Naivasha, calculated as the residual in the water budget, was 5 (1973), 11 (1974) and 20% (1975) of the total water loss. Direct measurements of seepage in nearshore shallows indicated that water entered the lake via ground-water seepage in the northern portion and left the lake in the southern portion. Naivasha lies in a topographic closed basin but is hydrologically a seepage lake; it is distinctive among the lakes lying in the endorheic rift valleys of Ethiopia, Kenya and Tanzania because the water is fresh. The mean chemical composition (mg l^?1) of bulk precipitation collected on two transects across the rift valley near L. Naivasha and at three stations near Nairobi was: Na, 0.54, K, 0.31; Ca, 0.19; Mg, 0.23; SO₄, 0.72 and Cl, 0.41. The major inflow, the Malewa River, was largely a solution of bicarbonate (1.15 m-equiv, l^?1), sodium (9 mg l^?1) and calcium (8 mg l^?1) and carried a total dissolved solid load (kg ha^?1) of 62 (1973) and 120 (1974). Total dissolved solids, sodium, calcium and bicarbonate concentrations were inversely related to discharge. Among the standing waters in the Naivasha basin, sodium and bicarbonate are predominant and the mean total dissolved solute content (mg l^?1) increased from a low under the northern papyrus swamp (217) to intermediate values in L. Naivasha (329), the nearshore lagoons (367) and Crescent Island basin (394) to a high in Oloidien Lake (831). Ion ratios and stability field diagrams indicated that calcite is formed in the Crescent Island basin and Oloidien Lake. Calcite was detected in the sediments of the two basins. Ion ratios also indicated that sulphate was retained in the sediments of the northern papyrus swamp. Several factors combine to keep L. Naivasha's water fresh. A large fraction of the water supplied to the lake comes from dilute rivers and rain. The lake does not lie in a closed basin, but loses water and solutes via seepage. Exchanges with sediments both in the pelagic and littoral regions of the lake are the major routes for solute movement and biochemical sedimentation is a major factor in removal of silica. Both geochemical and biochemical sedimentation account for much of the potassium, calcium, magnesium and bicarbonate removal. Only low levels of the conservative ions, sodium and chloride, are taken up by the sediments, while very low levels of sulphate and fluoride are actually released.     

Influence of proximity to a geographical range limit on the physiology of a tropical bird

1. Species' geographical ranges can be limited by a variety of biotic and abiotic factors. Physiological challenge in response to unsuitable environmental conditions can establish limits to geographical ranges. 2. We studied the physiology of Song Wrens (Cyphorhinus phaeocephalus) across their geographical range on the isthmus of Panama, an area characterized by a strong rainfall gradient. Wrens are common on the Caribbean slope of the isthmus where annual rainfall is greatest, but wren abundance declines towards the south as annual rainfall declines. Song Wrens are completely absent from the driest third of the isthmus. 3. We searched for the existence of a physiologically induced distribution limit by measuring body condition (an integrative measure of energy balance), hematocrit (% packed red blood cells in a given blood sample), and corticosterone levels (CORT, a steroid hormone that regulates the availability of energy and the endocrine stress response) in males and females. We caught birds by luring them into nets when they responded to playback of conspecific song. 4. Wrens living in drier habitat near the geographical range edge were significantly more likely to have abnormally low hematocrit scores. Baseline CORT levels were negatively associated with rainfall in one of our three best-fit path models, indicating potential energetic challenge in some individuals. Maximum CORT levels during a 60-min period of restraint correlated significantly only with sex, being higher in females. Birds with the poorest body condition lived at the dry end of the gradient. Birds on the wet end of the gradient responded fastest to conspecific song. 5. Environmental conditions vary across geographical ranges and may influence the physiological conditions of organisms, thereby enforcing limits to species' distributions. Highly specialized species, such as birds of the rain forest understory, may be especially susceptible to environmental variation associated with changing climatic conditions.     

The cooling of convolvulaceous flowers in a tropical environment

The temperatures of flowers of Ipomoea pes‐caprae ssp. brasilensis, Ipomoea aquatica and Merremia borneensis in bright sunshine, were studied to determine the role of corollas and sepals in cooling the gynoecium. The corollas and sepals were prevented from transpiring by greasing, to investigate the extent of evaporative cooling. In the exposed natural habitats of these flowers the maximum temperatures of air and soil were high (32 and 42 °C, respectively) and corolla, sepal and gynoecium temperatures were often intermediate. Despite being almost astomatous, significant evaporative cooling was observed in the corolla. Between 20 and 80% of the energy absorbed by the corollas was dissipated as evaporation. The sepals were stomatous and their evaporative cooling was very important in reducing the temperature of the gynoecium. The temperatures of the non‐transpiring gynoecia and corollas were significantly higher than the temperatures of the normally transpiring corollas and gynoecia. Furthermore, the gynoecia temperatures were significantly higher with non‐transpiring corollas than with normally transpiring corollas, suggesting that the corollas alone play a role in maintaining the gynoecium within optimal temperatures levels. It was shown in an incubation experiment that temperatures exceeding 32 °C may damage the carpels, and temperatures exceeding 42 °C may damage sepals. Pollen grains were killed after 200 min of exposure to temperatures in the range 32 to 47 °C. It is concluded that the cooling mechanisms (evaporation and self‐shading) are critical for the reproductive success of these flowers in their natural environment.     

Evolution of migration in a periodically changing environment

The ability to migrate can evolve in response to various forces. In particular, when selection is heterogeneous in space but constant in time, local adaptation induces a fitness cost on immigrants and selects against migration. The evolutionary outcome, however, is less clear when selection also varies temporally. Here, we present a two-locus model analyzing the effects of spatial and temporal variability in selection on the evolution of migration. The first locus is under temporally varying selection (various periodic functions are considered, but a general nonparametric framework is used), and the second locus is a modifier controlling migration ability. First, we study the dynamics of local adaptation and derive the migration rate that maximizes local adaptation as a function of the speed and geometry of the fluctuations in the environment. Second, we derive an analytical expression for the evolutionarily stable migration rate. When there is no cost of migration, we show that higher migration rates are favored when selection changes fast. When migration is costly, however, the evolutionarily stable migration rate is maximal for an intermediate speed of the variation of selection. This model may help in understanding the evolution of migration in a broad range of scenarios and, in particular, in host-parasite systems, where selection is thought to vary quickly in both space and time.     

The evolution of migration in a seasonal environment

Despite the fact that migration occurs in a wide variety of taxa worldwide, little is known about the conditions under which migration is expected to evolve from an ancestral resident population. We develop a model that focuses on ecological factors affecting the evolution of migration in a seasonal environment within a genetically explicit framework. We model the evolution of migration for two common types of migration: ‘shared breeding’ where migrants share a breeding ground with residents and migrate to a separate non-breeding area, versus ‘shared non-breeding’, where migrants share a non-breeding ground with residents and migrate to a separate breeding area. Ecologically, migration is more easily established in the shared-breeding case versus the shared-non-breeding case. Genetically, the additive effect of a migratory allele affects its establishment more in the shared-non-breeding case versus the shared-breeding case, whereas the dominance effect of the allele affects its establishment more in the shared-breeding case versus the shared-non-breeding case. Generally, migratory alleles can invade even when residents are competitively superior to migrants during the shared season. Partial migration occurs when the population is polymorphic for migratory and non-migratory alleles, and is dependent upon which season is shared and the additive and dominance behaviour of the migratory allele.